HEADER LIGASE 03-FEB-10 2KTL TITLE STRUCTURE OF C-TERMINAL DOMAIN FROM MTTYRRS OF A. NIDULANS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYROSYL-TRNA SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS NIDULANS FGSC A4; SOURCE 3 ORGANISM_TAXID: 227321; SOURCE 4 GENE: ANIA_01709; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11D KEYWDS S4 FOLD, AMINOACYL-TRNA SYNTHETASE, LIGASE EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR N.S.CHARI REVDAT 1 04-MAY-11 2KTL 0 JRNL AUTH D.HOFFMAN JRNL TITL STRUCTURE OF C-TERMINAL DOMAIN FROM MTTYRRS OF A. NIDULANS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KTL COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-FEB-10. REMARK 100 THE RCSB ID CODE IS RCSB101557. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : 0.5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MG/ML [U-100% 15N] PROTEIN, REMARK 210 20 MG/ML [U-100% 13C] PROTEIN, REMARK 210 500 MM SODIUM CHLORIDE, 10 MM REMARK 210 TRIS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 2D 1H-1H TOCSY; 2D 1H-1H COSY; 2D REMARK 210 1H-1H NOESY; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H-13C REMARK 210 NOESY; 3D HN(COCA)CB REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 544 H GLY A 546 1.38 REMARK 500 O SER A 517 H GLY A 521 1.38 REMARK 500 O GLY A 545 H MET A 547 1.45 REMARK 500 HA SER A 517 HB2 GLU A 520 1.47 REMARK 500 O ARG A 523 H ASN A 527 1.53 REMARK 500 HG22 THR A 564 H GLN A 565 1.56 REMARK 500 O SER A 517 N GLY A 521 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 465 -73.31 -103.34 REMARK 500 1 LEU A 467 71.04 -114.63 REMARK 500 1 SER A 468 43.36 -99.37 REMARK 500 1 ASN A 472 99.23 -162.60 REMARK 500 1 PRO A 473 -167.87 -68.71 REMARK 500 1 HIS A 479 84.57 -62.86 REMARK 500 1 PRO A 481 -77.46 -49.76 REMARK 500 1 GLN A 482 -72.31 -135.56 REMARK 500 1 ALA A 486 -70.00 -50.35 REMARK 500 1 ASN A 487 -76.51 -72.79 REMARK 500 1 PRO A 489 41.85 -88.31 REMARK 500 1 THR A 504 -76.61 -73.32 REMARK 500 1 SER A 506 -72.69 -48.97 REMARK 500 1 ALA A 512 -72.81 -71.24 REMARK 500 1 ALA A 516 3.04 -69.09 REMARK 500 1 SER A 517 8.75 -58.35 REMARK 500 1 ASN A 528 40.19 74.51 REMARK 500 1 GLU A 542 176.85 -49.12 REMARK 500 1 PRO A 548 166.84 -47.63 REMARK 500 1 ASN A 560 -76.64 -84.00 REMARK 500 1 THR A 564 -71.35 -49.27 REMARK 500 1 ILE A 568 8.09 -62.81 REMARK 500 1 ASP A 570 61.27 33.85 REMARK 500 1 TRP A 581 -52.38 -139.07 REMARK 500 1 LEU A 599 -11.42 -48.21 REMARK 500 1 VAL A 607 -71.37 -50.82 REMARK 500 2 GLN A 474 36.70 -97.93 REMARK 500 2 PRO A 478 34.23 -84.36 REMARK 500 2 PRO A 481 39.81 -85.15 REMARK 500 2 ASN A 487 -74.24 -70.94 REMARK 500 2 PRO A 489 42.39 -74.50 REMARK 500 2 SER A 490 -36.23 -38.29 REMARK 500 2 THR A 504 -76.52 -73.32 REMARK 500 2 SER A 506 -72.79 -48.97 REMARK 500 2 ALA A 512 -72.84 -71.40 REMARK 500 2 ALA A 516 4.05 -67.94 REMARK 500 2 SER A 517 9.19 -57.70 REMARK 500 2 ASN A 528 40.26 73.65 REMARK 500 2 ARG A 535 91.41 -160.17 REMARK 500 2 LYS A 540 30.65 -98.03 REMARK 500 2 GLU A 542 153.81 -48.46 REMARK 500 2 PRO A 548 152.68 -45.75 REMARK 500 2 ASN A 560 -76.32 -90.88 REMARK 500 2 ILE A 568 9.58 -57.26 REMARK 500 2 ASP A 570 50.00 35.45 REMARK 500 2 TRP A 581 -53.02 -139.29 REMARK 500 2 LEU A 599 -14.89 -47.86 REMARK 500 2 VAL A 607 -71.95 -50.66 REMARK 500 2 LYS A 612 37.37 -96.25 REMARK 500 3 THR A 457 39.48 -97.03 REMARK 500 REMARK 500 THIS ENTRY HAS 294 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KTL A 455 617 UNP C8VNV9 C8VNV9_EMENI 265 427 SEQADV 2KTL MET A 454 UNP C8VNV9 INITIATING METHIONINE SEQRES 1 A 164 MET PRO ARG THR ALA SER PRO GLY ASN PRO LYS SER SER SEQRES 2 A 164 LEU SER GLY PHE VAL ASN PRO GLN SER GLY ASN PRO HIS SEQRES 3 A 164 ALA PRO GLN THR ASN PHE ALA ASN MET PRO SER ALA ARG SEQRES 4 A 164 VAL THR LEU PRO LYS SER LEU VAL TYR ASP LYS THR PHE SEQRES 5 A 164 SER LYS VAL LEU TRP SER ALA GLY LEU VAL ALA SER LYS SEQRES 6 A 164 SER GLU GLY GLN ARG ILE ILE ASN ASN ASN GLY ALA TYR SEQRES 7 A 164 VAL GLY SER ARG PRO GLY VAL LYS LYS ASN GLU PRO GLY SEQRES 8 A 164 GLY GLY MET PRO ASP ASP LEU THR PHE THR PRO ILE LYS SEQRES 9 A 164 THR TRP ASN ALA SER LYS THR GLN GLU PHE ILE ILE ASP SEQRES 10 A 164 GLY ASP LEU LEU ILE LEU LYS LEU GLY LYS TRP LYS MET SEQRES 11 A 164 LYS LEU VAL SER ILE VAL SER ASP GLU LYS PHE LYS GLU SEQRES 12 A 164 LEU GLY LEU THR ALA PRO GLY TRP ASP GLU VAL VAL GLY SEQRES 13 A 164 LYS GLY LYS GLU GLU PRO SER PRO HELIX 1 1 PRO A 496 ASP A 502 5 7 HELIX 2 2 THR A 504 ALA A 512 1 9 HELIX 3 3 SER A 517 ASN A 528 1 12 HELIX 4 4 ASN A 560 ILE A 568 1 9 HELIX 5 5 SER A 590 GLY A 598 1 9 HELIX 6 6 ALA A 601 VAL A 608 1 8 SHEET 1 A 4 ALA A 491 THR A 494 0 SHEET 2 A 4 MET A 583 SER A 587 1 O LEU A 585 N ALA A 491 SHEET 3 A 4 LEU A 574 LEU A 578 -1 N LEU A 576 O LYS A 584 SHEET 4 A 4 ALA A 530 SER A 534 -1 N TYR A 531 O LYS A 577 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1