HEADER MEMBRANE PROTEIN 04-FEB-10 2KTM TITLE SOLUTION NMR STRUCTURE OF H2H3 DOMAIN OF OVINE PRION PROTEIN (RESIDUES TITLE 2 167-234) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: H2H3 FRAGMENT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OVIS ARIES; SOURCE 3 ORGANISM_COMMON: DOMESTIC SHEEP,LAMBS,WILD SHEEP; SOURCE 4 ORGANISM_TAXID: 9940; SOURCE 5 STRAIN: SUFFOLK; SOURCE 6 VARIANT: ARQ; SOURCE 7 GENE: PRNP; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 12 EXPRESSION_SYSTEM_VECTOR: PET-28A KEYWDS H2H3, PRION PROTEIN, PEPTIDE FOLDING, FIBRILIZATION CORE, CELL KEYWDS 2 MEMBRANE, MEMBRANE, PRION, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR A.PASTORE,M.ADROVER,K.PAUWELS,C.DE CHIARA,S.PRIGENT,H.REZEAI REVDAT 3 10-NOV-21 2KTM 1 REMARK SEQADV REVDAT 2 18-MAR-15 2KTM 1 JRNL VERSN REVDAT 1 07-APR-10 2KTM 0 JRNL AUTH M.ADROVER,K.PAUWELS,S.PRIGENT,C.DE CHIARA,Z.XU,C.CHAPUIS, JRNL AUTH 2 A.PASTORE,H.REZAEI JRNL TITL PRION FIBRILLIZATION IS MEDIATED BY A NATIVE STRUCTURAL JRNL TITL 2 ELEMENT THAT COMPRISES HELICES H2 AND H3. JRNL REF J.BIOL.CHEM. V. 285 21004 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20375014 JRNL DOI 10.1074/JBC.M110.111815 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA V2.2, ARIA V2.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KTM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000101558. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : 0.006 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-0.7 MM [U-100% 13C; U-100% REMARK 210 15N] H2H3-1, 10% D2O-2, 90% H2O- REMARK 210 3, 5 MM SODIUM CITRATE-4, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCA; 3D REMARK 210 HN(CO)CA; 3D 1H-15N NOESY; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY; CBARO; REMARK 210 2D 1H-1H TOCSY; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA V2.2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-12 REMARK 465 RES C SSSEQI REMARK 465 MET A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 SER A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 SER A 156 REMARK 465 SER A 157 REMARK 465 GLY A 158 REMARK 465 LEU A 159 REMARK 465 VAL A 160 REMARK 465 PRO A 161 REMARK 465 ARG A 162 REMARK 465 GLY A 163 REMARK 465 SER A 164 REMARK 465 HIS A 165 REMARK 465 MET A 166 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG3 GLN A 230 H ARG A 231 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 168 36.13 -84.12 REMARK 500 1 ASP A 170 -7.47 -58.97 REMARK 500 1 GLU A 199 72.81 43.24 REMARK 500 1 ASN A 200 -64.63 -129.79 REMARK 500 1 PHE A 201 -105.31 42.09 REMARK 500 1 THR A 202 150.38 95.60 REMARK 500 1 GLN A 230 -74.76 -65.06 REMARK 500 1 ALA A 233 110.61 -175.68 REMARK 500 2 ASP A 170 -3.15 -59.63 REMARK 500 2 GLU A 199 81.31 57.71 REMARK 500 2 ASN A 200 46.89 -151.37 REMARK 500 2 GLN A 230 -71.55 -67.02 REMARK 500 2 ALA A 233 128.98 69.79 REMARK 500 3 ASP A 170 1.05 -65.27 REMARK 500 3 LYS A 197 33.09 -83.17 REMARK 500 3 ASN A 200 67.08 -113.13 REMARK 500 3 TYR A 229 61.10 75.55 REMARK 500 3 GLN A 230 -78.52 -77.84 REMARK 500 3 ALA A 233 65.59 -167.34 REMARK 500 4 ASP A 170 -6.43 -58.53 REMARK 500 4 GLU A 199 87.75 -57.62 REMARK 500 4 ASN A 200 -64.73 -132.91 REMARK 500 4 PHE A 201 -99.79 38.82 REMARK 500 4 THR A 202 149.03 93.13 REMARK 500 4 GLN A 230 -71.46 -77.39 REMARK 500 5 LYS A 197 23.54 -74.24 REMARK 500 5 ASN A 200 -71.59 -106.14 REMARK 500 5 PHE A 201 94.57 33.97 REMARK 500 5 GLN A 230 -88.93 -37.20 REMARK 500 5 ALA A 233 24.61 -142.42 REMARK 500 6 GLU A 199 58.50 37.75 REMARK 500 6 ASN A 200 -87.77 -117.11 REMARK 500 6 PHE A 201 175.82 46.07 REMARK 500 6 GLN A 230 -73.55 -81.35 REMARK 500 7 ASN A 200 53.53 -110.33 REMARK 500 7 TYR A 229 32.64 76.80 REMARK 500 8 PRO A 168 91.52 -66.04 REMARK 500 8 ASP A 170 8.31 -60.99 REMARK 500 8 PHE A 201 97.55 28.91 REMARK 500 8 TYR A 229 49.04 72.56 REMARK 500 8 GLN A 230 -74.24 -83.18 REMARK 500 8 ALA A 233 19.60 58.65 REMARK 500 9 GLU A 199 85.48 46.01 REMARK 500 9 ASN A 200 -86.29 -136.42 REMARK 500 9 PHE A 201 -179.79 44.50 REMARK 500 9 TYR A 228 -62.16 -91.52 REMARK 500 9 TYR A 229 -111.91 164.83 REMARK 500 9 GLN A 230 -85.86 56.96 REMARK 500 10 PRO A 168 48.79 -75.38 REMARK 500 10 ASN A 200 -73.23 -116.84 REMARK 500 REMARK 500 THIS ENTRY HAS 64 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Y2S RELATED DB: PDB REMARK 900 RELATED ID: 1TPX RELATED DB: PDB REMARK 900 RELATED ID: 1XYU RELATED DB: PDB REMARK 900 RELATED ID: 1TQB RELATED DB: PDB DBREF 2KTM A 167 234 UNP Q072G4 Q072G4_SHEEP 167 234 SEQADV 2KTM MET A 146 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM GLY A 147 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM SER A 148 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM SER A 149 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 150 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 151 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 152 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 153 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 154 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 155 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM SER A 156 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM SER A 157 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM GLY A 158 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM LEU A 159 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM VAL A 160 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM PRO A 161 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM ARG A 162 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM GLY A 163 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM SER A 164 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM HIS A 165 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM MET A 166 UNP Q072G4 EXPRESSION TAG SEQADV 2KTM ALA A 208 UNP Q072G4 ILE 208 ENGINEERED MUTATION SEQRES 1 A 89 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 89 LEU VAL PRO ARG GLY SER HIS MET ARG PRO VAL ASP GLN SEQRES 3 A 89 TYR SER ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN SEQRES 4 A 89 ILE THR VAL LYS GLN HIS THR VAL THR THR THR THR LYS SEQRES 5 A 89 GLY GLU ASN PHE THR GLU THR ASP ILE LYS ALA MET GLU SEQRES 6 A 89 ARG VAL VAL GLU GLN MET CYS ILE THR GLN TYR GLN ARG SEQRES 7 A 89 GLU SER GLN ALA TYR TYR GLN ARG GLY ALA SER HELIX 1 1 VAL A 169 ASN A 174 1 6 HELIX 2 2 ASN A 174 LYS A 197 1 24 HELIX 3 3 PHE A 201 TYR A 229 1 29 SSBOND 1 CYS A 182 CYS A 217 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1