HEADER TRANSCRIPTION 12-FEB-10 2KU7 TITLE SOLUTION STRUCTURE OF MLL1 PHD3-CYP33 RRM CHIMERIC PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLL1 PHD3-CYP33 RRM CHIMERIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSFDUET-1 KEYWDS MLL1, CYP33, TRANSCRIPTIONAL REGULATION, RRM DOMAIN, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.SONG,Z.WANG,D.PATEL REVDAT 4 22-MAY-24 2KU7 1 REMARK REVDAT 3 16-MAR-22 2KU7 1 REMARK SEQADV REVDAT 2 21-JUL-10 2KU7 1 JRNL REVDAT 1 07-JUL-10 2KU7 0 JRNL AUTH Z.WANG,J.SONG,T.A.MILNE,G.G.WANG,H.LI,C.D.ALLIS,D.J.PATEL JRNL TITL PRO ISOMERIZATION IN MLL1 PHD3-BROMO CASSETTE CONNECTS JRNL TITL 2 H3K4ME READOUT TO CYP33 AND HDAC-MEDIATED REPRESSION. JRNL REF CELL(CAMBRIDGE,MASS.) V. 141 1183 2010 JRNL REFN ISSN 0092-8674 JRNL PMID 20541251 JRNL DOI 10.1016/J.CELL.2010.05.016 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, C. ET AL. (X REMARK 3 -PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KU7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000101577. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.2 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3-0.5 MM [U-100% 13C; U-100% REMARK 210 15N] MLL PHD3-CYP33 RRM, 20 MM REMARK 210 SODIUM PHOSPHATE, 50 MM SODIUM REMARK 210 CHLORIDE, 0.4 MM DSS, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 15N-EDITED 1H-1H NOESY; 3D 13C- REMARK 210 EDITED 1H-1H NOESY; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY, CYANA, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 ALA A 140 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 91 -64.99 -90.71 REMARK 500 1 PRO A 96 96.41 -58.06 REMARK 500 2 ARG A 64 -27.98 -141.18 REMARK 500 2 THR A 91 -67.33 -91.20 REMARK 500 3 THR A 61 -61.24 -94.64 REMARK 500 4 TYR A 36 -47.13 -166.32 REMARK 500 4 THR A 37 24.23 47.73 REMARK 500 4 THR A 91 -62.59 -90.19 REMARK 500 5 THR A 37 100.54 54.65 REMARK 500 5 THR A 62 -0.71 56.46 REMARK 500 6 PRO A 96 96.69 -65.77 REMARK 500 7 VAL A 12 -30.63 -140.09 REMARK 500 7 PRO A 31 29.99 -76.03 REMARK 500 7 GLU A 32 -80.40 50.64 REMARK 500 8 PHE A 131 18.85 59.23 REMARK 500 9 THR A 61 -63.05 -95.33 REMARK 500 9 ARG A 105 -7.55 67.75 REMARK 500 10 MET A 3 -46.62 70.85 REMARK 500 10 GLU A 17 -56.91 66.01 REMARK 500 10 THR A 91 -62.90 -90.36 REMARK 500 11 GLU A 17 150.10 64.32 REMARK 500 11 GLU A 43 -22.51 -140.09 REMARK 500 11 THR A 91 -62.10 -91.48 REMARK 500 12 VAL A 12 -33.02 -139.61 REMARK 500 12 THR A 91 -60.76 -92.94 REMARK 500 12 GLU A 102 25.30 49.81 REMARK 500 12 ARG A 105 -6.08 70.42 REMARK 500 13 VAL A 12 -37.77 -133.60 REMARK 500 13 ASN A 29 77.83 -112.76 REMARK 500 13 TYR A 36 -20.96 -161.87 REMARK 500 13 ASN A 40 153.29 66.85 REMARK 500 13 ARG A 64 -40.36 -132.63 REMARK 500 14 TRP A 11 97.56 48.83 REMARK 500 14 ASN A 29 64.28 -104.66 REMARK 500 14 ARG A 105 -18.97 71.61 REMARK 500 15 THR A 42 -43.24 -132.52 REMARK 500 16 ASN A 29 54.35 -105.55 REMARK 500 16 CYS A 38 -44.63 -130.72 REMARK 500 16 THR A 42 57.07 -100.89 REMARK 500 16 THR A 91 -60.80 -94.21 REMARK 500 17 GLU A 17 169.03 62.62 REMARK 500 17 VAL A 34 -8.34 -56.64 REMARK 500 17 TYR A 36 105.81 53.87 REMARK 500 17 THR A 62 -76.23 51.24 REMARK 500 17 THR A 91 -61.27 -93.71 REMARK 500 18 CYS A 5 -47.56 71.26 REMARK 500 18 VAL A 34 9.75 53.57 REMARK 500 18 CYS A 38 -73.42 56.48 REMARK 500 18 THR A 91 -62.63 -90.45 REMARK 500 19 GLU A 32 -35.53 -37.45 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KU7 A 2 45 UNP Q03164 MLL1_HUMAN 1585 1628 DBREF 2KU7 A 60 140 UNP Q9UNP9 PPIE_HUMAN 2 82 SEQADV 2KU7 SER A 1 UNP Q03164 EXPRESSION TAG SEQADV 2KU7 VAL A 46 UNP Q03164 LINKER SEQADV 2KU7 ASP A 47 UNP Q03164 LINKER SEQADV 2KU7 GLY A 48 UNP Q03164 LINKER SEQADV 2KU7 GLY A 49 UNP Q03164 LINKER SEQADV 2KU7 SER A 50 UNP Q03164 LINKER SEQADV 2KU7 GLY A 51 UNP Q03164 LINKER SEQADV 2KU7 GLY A 52 UNP Q03164 LINKER SEQADV 2KU7 SER A 53 UNP Q03164 LINKER SEQADV 2KU7 GLY A 54 UNP Q03164 LINKER SEQADV 2KU7 GLY A 55 UNP Q03164 LINKER SEQADV 2KU7 SER A 56 UNP Q03164 LINKER SEQADV 2KU7 GLY A 57 UNP Q03164 LINKER SEQADV 2KU7 GLY A 58 UNP Q03164 LINKER SEQADV 2KU7 SER A 59 UNP Q03164 LINKER SEQRES 1 A 140 SER MET MET GLN CYS GLY LYS CYS ASP ARG TRP VAL HIS SEQRES 2 A 140 SER LYS CYS GLU ASN LEU SER ASP GLU MET TYR GLU ILE SEQRES 3 A 140 LEU SER ASN LEU PRO GLU SER VAL ALA TYR THR CYS VAL SEQRES 4 A 140 ASN CYS THR GLU ARG HIS VAL ASP GLY GLY SER GLY GLY SEQRES 5 A 140 SER GLY GLY SER GLY GLY SER ALA THR THR LYS ARG VAL SEQRES 6 A 140 LEU TYR VAL GLY GLY LEU ALA GLU GLU VAL ASP ASP LYS SEQRES 7 A 140 VAL LEU HIS ALA ALA PHE ILE PRO PHE GLY ASP ILE THR SEQRES 8 A 140 ASP ILE GLN ILE PRO LEU ASP TYR GLU THR GLU LYS HIS SEQRES 9 A 140 ARG GLY PHE ALA PHE VAL GLU PHE GLU LEU ALA GLU ASP SEQRES 10 A 140 ALA ALA ALA ALA ILE ASP ASN MET ASN GLU SER GLU LEU SEQRES 11 A 140 PHE GLY ARG THR ILE ARG VAL ASN LEU ALA HELIX 1 1 TRP A 11 GLU A 17 1 7 HELIX 2 2 SER A 20 ASN A 29 1 10 HELIX 3 3 ASP A 76 ILE A 85 1 10 HELIX 4 4 PRO A 86 GLY A 88 5 3 HELIX 5 5 LEU A 114 MET A 125 1 12 SHEET 1 A 5 ILE A 90 GLN A 94 0 SHEET 2 A 5 PHE A 107 PHE A 112 -1 O GLU A 111 N THR A 91 SHEET 3 A 5 VAL A 65 GLY A 69 -1 N VAL A 68 O ALA A 108 SHEET 4 A 5 ARG A 133 LEU A 139 -1 O ASN A 138 N TYR A 67 SHEET 5 A 5 GLU A 127 LEU A 130 -1 N LEU A 130 O ARG A 133 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1