HEADER TRANSFERASE 17-FEB-10 2KUE TITLE NMR STRUCTURE OF THE PASTA DOMAIN 2 AND 3 OF MYCOBACTERIUM TITLE 2 TUBERCULOSIS OF PKNB COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PKNB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PASTA DOMAINS 2 AND 3, RESIDUES 423-557; COMPND 5 SYNONYM: PKNB; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV0014C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21-TEV KEYWDS KINASE, EXTERNAL DOMAIN, SIGNALING, STPK, RESUSCITATION, KEYWDS 2 SERINE/THREONINE-PROTEIN KINASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.BARTHE,G.MUKAMOLOVA,C.ROUMESTAND,M.COHEN-GONSAUD REVDAT 4 14-JUN-23 2KUE 1 REMARK REVDAT 3 26-FEB-20 2KUE 1 REMARK SEQADV REVDAT 2 26-MAY-10 2KUE 1 JRNL REVDAT 1 14-APR-10 2KUE 0 JRNL AUTH P.BARTHE,G.V.MUKAMOLOVA,C.ROUMESTAND,M.COHEN-GONSAUD JRNL TITL THE STRUCTURE OF PKNB EXTRACELLULAR PASTA DOMAIN FROM JRNL TITL 2 MYCOBACTERIUM TUBERCULOSIS SUGGESTS A LIGAND-DEPENDENT JRNL TITL 3 KINASE ACTIVATION JRNL REF STRUCTURE V. 18 606 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20462494 JRNL DOI 10.1016/J.STR.2010.02.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: LIKE RECOORD DATABASE REMARK 4 REMARK 4 2KUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-FEB-10. REMARK 100 THE DEPOSITION ID IS D_1000101584. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6MM [U-100% 15N] PKNB_PASTA23; REMARK 210 20MM SODIUM ACETATE; 95% H2O/5% REMARK 210 D2O; 0.6MM [U-100% 13C; U-100% REMARK 210 15N] PKNB_PASTA23; 20MM SODIUM REMARK 210 ACETATE; 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 3D HNCA; 3D HN(COCA)CB; REMARK 210 3D HNCACB; 3D HNCO; 3D HNCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : RESTRAINED MOLECULAR DYNAMICS IN REMARK 210 A HYDRATED ENVIRONMENT REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A 420 REMARK 465 HIS A 421 REMARK 465 MET A 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 460 108.53 -33.97 REMARK 500 1 PRO A 528 -77.27 -81.16 REMARK 500 2 ARG A 529 -52.08 -136.10 REMARK 500 3 PRO A 528 -73.02 -75.32 REMARK 500 3 ARG A 529 -58.46 -122.97 REMARK 500 4 ASP A 431 67.23 -102.39 REMARK 500 4 PRO A 528 -142.38 -80.72 REMARK 500 5 VAL A 500 16.28 -150.85 REMARK 500 5 ARG A 529 -58.83 -163.20 REMARK 500 6 ASP A 431 70.64 -112.41 REMARK 500 7 PRO A 528 -138.08 -71.80 REMARK 500 8 ASP A 431 32.24 -85.66 REMARK 500 8 ALA A 531 74.36 -154.07 REMARK 500 9 ALA A 531 85.04 -166.11 REMARK 500 10 PRO A 528 -71.15 -76.13 REMARK 500 11 ASP A 431 69.37 -105.81 REMARK 500 11 PRO A 528 -144.42 -80.62 REMARK 500 12 PRO A 528 -83.39 -81.85 REMARK 500 12 ALA A 531 82.43 -166.46 REMARK 500 13 GLU A 425 49.12 -82.59 REMARK 500 13 ALA A 493 70.12 -112.57 REMARK 500 13 PRO A 528 -142.85 -70.19 REMARK 500 14 VAL A 500 42.04 -105.53 REMARK 500 14 ALA A 531 108.01 -164.89 REMARK 500 15 ARG A 529 -64.25 -120.60 REMARK 500 16 ASP A 431 37.57 -84.95 REMARK 500 16 VAL A 500 16.81 -140.60 REMARK 500 16 ALA A 531 113.16 -175.95 REMARK 500 17 THR A 436 158.30 175.49 REMARK 500 17 ALA A 493 96.01 -69.33 REMARK 500 17 ARG A 529 -89.49 37.64 REMARK 500 18 PRO A 528 -166.71 -61.90 REMARK 500 19 GLN A 503 -167.82 -117.32 REMARK 500 19 PRO A 528 -75.11 -63.69 REMARK 500 19 ARG A 529 -57.70 -121.17 REMARK 500 20 THR A 436 147.36 -170.39 REMARK 500 20 PRO A 528 -153.00 -68.39 REMARK 500 21 THR A 460 100.24 -24.98 REMARK 500 21 ALA A 493 96.83 -65.57 REMARK 500 22 PRO A 528 -88.11 -78.08 REMARK 500 23 ARG A 529 -88.22 -122.19 REMARK 500 24 GLU A 425 37.26 -83.00 REMARK 500 24 VAL A 500 59.08 -115.04 REMARK 500 25 ASP A 431 70.22 -111.31 REMARK 500 25 THR A 436 149.08 -170.30 REMARK 500 25 PRO A 528 -72.69 -56.17 REMARK 500 26 ASP A 431 72.04 -115.28 REMARK 500 27 PRO A 528 -90.85 -90.92 REMARK 500 28 ASP A 431 72.96 -114.90 REMARK 500 28 PRO A 528 -72.23 -52.12 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 427 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KUD RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PASTA DOMAIN 1 AND 2 REMARK 900 RELATED ID: 2KUF RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PASTA DOMAIN 3 AND 4 REMARK 900 RELATED ID: 2KUI RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE PASTA DOMAIN REMARK 900 RELATED ID: 16733 RELATED DB: BMRB DBREF 2KUE A 423 557 UNP P0A5S4 PKNB_MYCTU 423 557 SEQADV 2KUE GLY A 420 UNP P0A5S4 EXPRESSION TAG SEQADV 2KUE HIS A 421 UNP P0A5S4 EXPRESSION TAG SEQADV 2KUE MET A 422 UNP P0A5S4 EXPRESSION TAG SEQRES 1 A 138 GLY HIS MET GLY PRO GLU GLN ARG GLU ILE PRO ASP VAL SEQRES 2 A 138 SER THR LEU THR TYR ALA GLU ALA VAL LYS LYS LEU THR SEQRES 3 A 138 ALA ALA GLY PHE GLY ARG PHE LYS GLN ALA ASN SER PRO SEQRES 4 A 138 SER THR PRO GLU LEU VAL GLY LYS VAL ILE GLY THR ASN SEQRES 5 A 138 PRO PRO ALA ASN GLN THR SER ALA ILE THR ASN VAL VAL SEQRES 6 A 138 ILE ILE ILE VAL GLY SER GLY PRO ALA THR LYS ASP ILE SEQRES 7 A 138 PRO ASP VAL ALA GLY GLN THR VAL ASP VAL ALA GLN LYS SEQRES 8 A 138 ASN LEU ASN VAL TYR GLY PHE THR LYS PHE SER GLN ALA SEQRES 9 A 138 SER VAL ASP SER PRO ARG PRO ALA GLY GLU VAL THR GLY SEQRES 10 A 138 THR ASN PRO PRO ALA GLY THR THR VAL PRO VAL ASP SER SEQRES 11 A 138 VAL ILE GLU LEU GLN VAL SER LYS HELIX 1 1 THR A 436 ALA A 447 1 12 HELIX 2 2 THR A 460 VAL A 464 5 5 HELIX 3 3 THR A 504 GLY A 516 1 13 SHEET 1 A 2 GLN A 426 GLU A 428 0 SHEET 2 A 2 THR A 477 ALA A 479 -1 O SER A 478 N ARG A 427 SHEET 1 B 3 PHE A 452 PRO A 458 0 SHEET 2 B 3 VAL A 484 SER A 490 1 O SER A 490 N SER A 457 SHEET 3 B 3 VAL A 467 THR A 470 -1 N GLY A 469 O ILE A 487 SHEET 1 C 2 THR A 494 ASP A 496 0 SHEET 2 C 2 THR A 544 PRO A 546 -1 O VAL A 545 N LYS A 495 SHEET 1 D 3 PHE A 520 VAL A 525 0 SHEET 2 D 3 ILE A 551 SER A 556 1 O LEU A 553 N SER A 521 SHEET 3 D 3 VAL A 534 THR A 537 -1 N THR A 535 O GLN A 554 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1