data_2KUP # _entry.id 2KUP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2KUP RCSB RCSB101595 WWPDB D_1000101595 # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 2YS5 _pdbx_database_related.db_name PDB _pdbx_database_related.details 'AMBER minimization' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KUP _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2010-02-24 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Li, H.' 1 'Koshiba, S.' 2 'Inoue, M.' 3 'Kigawa, T.' 4 'Yokoyama, S.' 5 'RIKEN Structural Genomics/Proteomics Initiative (RSGI)' 6 # _citation.id primary _citation.title ;Structural basis for the recognition of nucleophosmin-anaplastic lymphoma kinase oncoprotein by the phosphotyrosine binding domain of Suc1-associated neurotrophic factor-induced tyrosine-phosphorylated target-2 ; _citation.journal_abbrev J.Struct.Funct.Genom. _citation.journal_volume 11 _citation.page_first 125 _citation.page_last 141 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country NE _citation.journal_id_ISSN 1345-711X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20454865 _citation.pdbx_database_id_DOI 10.1007/s10969-010-9091-x # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Koshiba, S.' 1 primary 'Li, H.' 2 primary 'Motoda, Y.' 3 primary 'Tomizawa, T.' 4 primary 'Kasai, T.' 5 primary 'Tochio, N.' 6 primary 'Yabuki, T.' 7 primary 'Harada, T.' 8 primary 'Watanabe, S.' 9 primary 'Tanaka, A.' 10 primary 'Shirouzu, M.' 11 primary 'Kigawa, T.' 12 primary 'Yamamoto, T.' 13 primary 'Yokoyama, S.' 14 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Fibroblast growth factor receptor substrate 3' 16332.278 1 ? ? 'PTB domain' ? 2 polymer syn '19-residue peptide from ALK tyrosine kinase receptor' 2343.644 1 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'FGFR substrate 3, Suc1-associated neurotrophic factor target 2, SNT-2, FGFR-signaling adaptor SNT2' 2 'HALK, Anaplastic lymphoma kinase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;GSSGSSGLNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYLCLRRYGYDSNLFSFESGRRC QTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEPVIITRNSHPAELDLPRAPQPPNALGYTVSS ; ;GSSGSSGLNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYLCLRRYGYDSNLFSFESGRRC QTGQGIFAFKCSRAEEIFNLLQDLMQCNSINVMEEPVIITRNSHPAELDLPRAPQPPNALGYTVSS ; A ? 2 'polypeptide(L)' no no LFRLRHFPCGNVNYGYQQQ LFRLRHFPCGNVNYGYQQQ B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 SER n 1 4 GLY n 1 5 SER n 1 6 SER n 1 7 GLY n 1 8 LEU n 1 9 ASN n 1 10 ARG n 1 11 ASP n 1 12 SER n 1 13 VAL n 1 14 PRO n 1 15 ASP n 1 16 ASN n 1 17 HIS n 1 18 PRO n 1 19 THR n 1 20 LYS n 1 21 PHE n 1 22 LYS n 1 23 VAL n 1 24 THR n 1 25 ASN n 1 26 VAL n 1 27 ASP n 1 28 ASP n 1 29 GLU n 1 30 GLY n 1 31 VAL n 1 32 GLU n 1 33 LEU n 1 34 GLY n 1 35 SER n 1 36 GLY n 1 37 VAL n 1 38 MET n 1 39 GLU n 1 40 LEU n 1 41 THR n 1 42 GLN n 1 43 SER n 1 44 GLU n 1 45 LEU n 1 46 VAL n 1 47 LEU n 1 48 HIS n 1 49 LEU n 1 50 HIS n 1 51 ARG n 1 52 ARG n 1 53 GLU n 1 54 ALA n 1 55 VAL n 1 56 ARG n 1 57 TRP n 1 58 PRO n 1 59 TYR n 1 60 LEU n 1 61 CYS n 1 62 LEU n 1 63 ARG n 1 64 ARG n 1 65 TYR n 1 66 GLY n 1 67 TYR n 1 68 ASP n 1 69 SER n 1 70 ASN n 1 71 LEU n 1 72 PHE n 1 73 SER n 1 74 PHE n 1 75 GLU n 1 76 SER n 1 77 GLY n 1 78 ARG n 1 79 ARG n 1 80 CYS n 1 81 GLN n 1 82 THR n 1 83 GLY n 1 84 GLN n 1 85 GLY n 1 86 ILE n 1 87 PHE n 1 88 ALA n 1 89 PHE n 1 90 LYS n 1 91 CYS n 1 92 SER n 1 93 ARG n 1 94 ALA n 1 95 GLU n 1 96 GLU n 1 97 ILE n 1 98 PHE n 1 99 ASN n 1 100 LEU n 1 101 LEU n 1 102 GLN n 1 103 ASP n 1 104 LEU n 1 105 MET n 1 106 GLN n 1 107 CYS n 1 108 ASN n 1 109 SER n 1 110 ILE n 1 111 ASN n 1 112 VAL n 1 113 MET n 1 114 GLU n 1 115 GLU n 1 116 PRO n 1 117 VAL n 1 118 ILE n 1 119 ILE n 1 120 THR n 1 121 ARG n 1 122 ASN n 1 123 SER n 1 124 HIS n 1 125 PRO n 1 126 ALA n 1 127 GLU n 1 128 LEU n 1 129 ASP n 1 130 LEU n 1 131 PRO n 1 132 ARG n 1 133 ALA n 1 134 PRO n 1 135 GLN n 1 136 PRO n 1 137 PRO n 1 138 ASN n 1 139 ALA n 1 140 LEU n 1 141 GLY n 1 142 TYR n 1 143 THR n 1 144 VAL n 1 145 SER n 1 146 SER n 2 1 LEU n 2 2 PHE n 2 3 ARG n 2 4 LEU n 2 5 ARG n 2 6 HIS n 2 7 PHE n 2 8 PRO n 2 9 CYS n 2 10 GLY n 2 11 ASN n 2 12 VAL n 2 13 ASN n 2 14 TYR n 2 15 GLY n 2 16 TYR n 2 17 GLN n 2 18 GLN n 2 19 GLN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'cell-free synthesis' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector P060320-18 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Chemically synthesized' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP FRS3_HUMAN O43559 1 ;LNRDSVPDNHPTKFKVTNVDDEGVELGSGVMELTQSELVLHLHRREAVRWPYLCLRRYGYDSNLFSFESGRRCQTGQGIF AFKCSRAEEIFNLLQDLMQCNSINVMEEPVIITRNSHPAELDLPRAPQPPNALGYTVSS ; 8 ? 2 UNP ALK_HUMAN Q9UM73 2 LFRLRHFPCGNVNYGYQQQ 1571 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KUP A 8 ? 146 ? O43559 8 ? 146 ? 8 146 2 2 2KUP B 1 ? 19 ? Q9UM73 1571 ? 1589 ? 1 19 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2KUP GLY A 1 ? UNP O43559 ? ? 'EXPRESSION TAG' 1 1 1 2KUP SER A 2 ? UNP O43559 ? ? 'EXPRESSION TAG' 2 2 1 2KUP SER A 3 ? UNP O43559 ? ? 'EXPRESSION TAG' 3 3 1 2KUP GLY A 4 ? UNP O43559 ? ? 'EXPRESSION TAG' 4 4 1 2KUP SER A 5 ? UNP O43559 ? ? 'EXPRESSION TAG' 5 5 1 2KUP SER A 6 ? UNP O43559 ? ? 'EXPRESSION TAG' 6 6 1 2KUP GLY A 7 ? UNP O43559 ? ? 'EXPRESSION TAG' 7 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '3D 1H-15N NOESY' 1 2 1 '3D 1H-13C NOESY' 1 3 1 '3D_13C,15N-F1 FILTERED 13C-EDITED NOESY' 1 4 1 '3D_13C,15N-F1 FILTERED 15N-EDITED NOESY' 1 5 1 '2D_F2-13C FILTERED NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 120 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;0.37mM [U-13C; U-15N] (SNT-2 PTB domain)-1, 0.37mM (hALK peptide)-2, 20mM [U-2H] TRIS-3, 100mM sodium chloride-4, 1mM [U-2H] DTT-5, 0.02% sodium azide-6, 90% H2O/10% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model Avance _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2KUP _pdbx_nmr_refine.method 'distance geometry' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'all calculated structures submitted' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KUP _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KUP _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'structure solution' AMBER ? 1 'Bruker Biospin' collection xwinnmr 3.5 2 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 20031121 3 'Johnson, One Moon Scientific' 'data analysis' NMRView 5.0.4 4 'Kobayashi, N.' 'data analysis' KUJIRA 0.9820 5 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 2.0.17 6 'Guntert, Mumenthaler and Wuthrich' refinement CYANA 2.0.17 7 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KUP _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KUP _struct.title 'Solution structure of the complex of the PTB domain of SNT-2 and 19-residue peptide (aa 1571-1589) of HALK' _struct.pdbx_descriptor 'Fibroblast growth factor receptor substrate 3, 19-residue peptide from ALK tyrosine kinase receptor' _struct.pdbx_model_details 'lowest energy, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KUP _struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/ONCOPROTEIN' _struct_keywords.text ;Complex, SNT-2, PTB DOMAIN, hALK, structural genomics, signaling protein, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN-ONCOPROTEIN complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id ALA _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 94 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id CYS _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 107 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ALA _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 94 _struct_conf.end_auth_comp_id CYS _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 107 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 8 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 55 ? TRP A 57 ? VAL A 55 TRP A 57 A 2 LEU A 45 ? HIS A 48 ? LEU A 45 HIS A 48 A 3 GLY A 34 ? GLU A 39 ? GLY A 34 GLU A 39 A 4 PHE A 21 ? VAL A 26 ? PHE A 21 VAL A 26 A 5 GLY A 85 ? LYS A 90 ? GLY A 85 LYS A 90 A 6 PHE A 72 ? SER A 76 ? PHE A 72 SER A 76 A 7 ARG A 64 ? GLY A 66 ? ARG A 64 GLY A 66 A 8 VAL B 12 ? TYR B 14 ? VAL B 12 TYR B 14 # _atom_sites.entry_id 2KUP _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 1 1 GLY GLY A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 SER 5 5 5 SER SER A . n A 1 6 SER 6 6 6 SER SER A . n A 1 7 GLY 7 7 7 GLY GLY A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 ASN 9 9 9 ASN ASN A . n A 1 10 ARG 10 10 10 ARG ARG A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 VAL 13 13 13 VAL VAL A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 HIS 17 17 17 HIS HIS A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 THR 19 19 19 THR THR A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 VAL 23 23 23 VAL VAL A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 VAL 26 26 26 VAL VAL A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 GLY 30 30 30 GLY GLY A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 GLU 39 39 39 GLU GLU A . n A 1 40 LEU 40 40 40 LEU LEU A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 SER 43 43 43 SER SER A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 VAL 46 46 46 VAL VAL A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 HIS 48 48 48 HIS HIS A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 HIS 50 50 50 HIS HIS A . n A 1 51 ARG 51 51 51 ARG ARG A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ALA 54 54 54 ALA ALA A . n A 1 55 VAL 55 55 55 VAL VAL A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 TRP 57 57 57 TRP TRP A . n A 1 58 PRO 58 58 58 PRO PRO A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 CYS 61 61 61 CYS CYS A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 ARG 64 64 64 ARG ARG A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 TYR 67 67 67 TYR TYR A . n A 1 68 ASP 68 68 68 ASP ASP A . n A 1 69 SER 69 69 69 SER SER A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 LEU 71 71 71 LEU LEU A . n A 1 72 PHE 72 72 72 PHE PHE A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 PHE 74 74 74 PHE PHE A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 GLY 77 77 77 GLY GLY A . n A 1 78 ARG 78 78 78 ARG ARG A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 CYS 80 80 80 CYS CYS A . n A 1 81 GLN 81 81 81 GLN GLN A . n A 1 82 THR 82 82 82 THR THR A . n A 1 83 GLY 83 83 83 GLY GLY A . n A 1 84 GLN 84 84 84 GLN GLN A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 ILE 86 86 86 ILE ILE A . n A 1 87 PHE 87 87 87 PHE PHE A . n A 1 88 ALA 88 88 88 ALA ALA A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 LYS 90 90 90 LYS LYS A . n A 1 91 CYS 91 91 91 CYS CYS A . n A 1 92 SER 92 92 92 SER SER A . n A 1 93 ARG 93 93 93 ARG ARG A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 ILE 97 97 97 ILE ILE A . n A 1 98 PHE 98 98 98 PHE PHE A . n A 1 99 ASN 99 99 99 ASN ASN A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 GLN 102 102 102 GLN GLN A . n A 1 103 ASP 103 103 103 ASP ASP A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 GLN 106 106 106 GLN GLN A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 SER 109 109 109 SER SER A . n A 1 110 ILE 110 110 110 ILE ILE A . n A 1 111 ASN 111 111 111 ASN ASN A . n A 1 112 VAL 112 112 112 VAL VAL A . n A 1 113 MET 113 113 113 MET MET A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 GLU 115 115 115 GLU GLU A . n A 1 116 PRO 116 116 116 PRO PRO A . n A 1 117 VAL 117 117 117 VAL VAL A . n A 1 118 ILE 118 118 118 ILE ILE A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 THR 120 120 120 THR THR A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 ASN 122 122 122 ASN ASN A . n A 1 123 SER 123 123 123 SER SER A . n A 1 124 HIS 124 124 124 HIS HIS A . n A 1 125 PRO 125 125 125 PRO PRO A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 ASP 129 129 129 ASP ASP A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 PRO 131 131 131 PRO PRO A . n A 1 132 ARG 132 132 132 ARG ARG A . n A 1 133 ALA 133 133 133 ALA ALA A . n A 1 134 PRO 134 134 134 PRO PRO A . n A 1 135 GLN 135 135 135 GLN GLN A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 PRO 137 137 137 PRO PRO A . n A 1 138 ASN 138 138 138 ASN ASN A . n A 1 139 ALA 139 139 139 ALA ALA A . n A 1 140 LEU 140 140 140 LEU LEU A . n A 1 141 GLY 141 141 141 GLY GLY A . n A 1 142 TYR 142 142 142 TYR TYR A . n A 1 143 THR 143 143 143 THR THR A . n A 1 144 VAL 144 144 144 VAL VAL A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 SER 146 146 146 SER SER A . n B 2 1 LEU 1 1 1 LEU LEU B . n B 2 2 PHE 2 2 2 PHE PHE B . n B 2 3 ARG 3 3 3 ARG ARG B . n B 2 4 LEU 4 4 4 LEU LEU B . n B 2 5 ARG 5 5 5 ARG ARG B . n B 2 6 HIS 6 6 6 HIS HIS B . n B 2 7 PHE 7 7 7 PHE PHE B . n B 2 8 PRO 8 8 8 PRO PRO B . n B 2 9 CYS 9 9 9 CYS CYS B . n B 2 10 GLY 10 10 10 GLY GLY B . n B 2 11 ASN 11 11 11 ASN ASN B . n B 2 12 VAL 12 12 12 VAL VAL B . n B 2 13 ASN 13 13 13 ASN ASN B . n B 2 14 TYR 14 14 14 TYR TYR B . n B 2 15 GLY 15 15 15 GLY GLY B . n B 2 16 TYR 16 16 16 TYR TYR B . n B 2 17 GLN 17 17 17 GLN GLN B . n B 2 18 GLN 18 18 18 GLN GLN B . n B 2 19 GLN 19 19 19 GLN GLN B . n # _pdbx_SG_project.full_name_of_center 'RIKEN Structural Genomics/Proteomics Initiative' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center RSGI _pdbx_SG_project.project_name 'NPPSFA, National Project on Protein Structural and Functional Analyses' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2014-02-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Database references' # loop_ _pdbx_database_remark.id _pdbx_database_remark.text 650 ;HELIX DETERMINATION METHOD: AUTHOR DETERMINED ; 700 ;SHEET DETERMINATION METHOD: AUTHOR DETERMINED ; # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'SNT-2 PTB domain-1' 0.37 ? mM '[U-13C; U-15N]' 1 'hALK peptide-2' 0.37 ? mM ? 1 TRIS-3 20 ? mM '[U-2H]' 1 'sodium chloride-4' 100 ? mM ? 1 DTT-5 1 ? mM '[U-2H]' 1 'sodium azide-6' 0.02 ? % ? 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 63 ? ? CZ A ARG 63 ? ? NH1 A ARG 63 ? ? 123.62 120.30 3.32 0.50 N 2 4 NE A ARG 64 ? ? CZ A ARG 64 ? ? NH1 A ARG 64 ? ? 123.33 120.30 3.03 0.50 N 3 16 NE A ARG 64 ? ? CZ A ARG 64 ? ? NH1 A ARG 64 ? ? 123.46 120.30 3.16 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 49 ? ? -152.31 -151.25 2 1 HIS A 50 ? ? -70.65 -159.97 3 1 ASN A 70 ? ? 49.33 23.59 4 1 ASN A 108 ? ? 64.86 -24.86 5 1 ILE A 110 ? ? -54.45 98.21 6 1 ILE A 119 ? ? -63.56 0.63 7 1 SER A 123 ? ? -171.60 -171.89 8 2 HIS A 50 ? ? -79.65 -82.43 9 2 ASN A 70 ? ? -152.49 8.79 10 2 SER A 109 ? ? -64.22 98.98 11 3 CYS A 91 ? ? -169.53 118.73 12 3 ASN A 111 ? ? 61.53 -14.77 13 3 ARG A 121 ? ? -166.17 97.77 14 4 HIS A 50 ? ? -95.42 -63.94 15 4 ASN A 70 ? ? -154.08 12.83 16 4 CYS A 91 ? ? -170.84 144.55 17 4 SER A 109 ? ? -39.33 112.37 18 4 ILE A 110 ? ? -91.74 -63.79 19 5 SER A 6 ? ? -145.82 13.65 20 5 GLU A 44 ? ? 170.95 167.05 21 5 ARG A 52 ? ? -143.61 -72.36 22 5 CYS A 91 ? ? -174.45 137.31 23 5 VAL A 112 ? ? -75.63 35.99 24 5 GLU A 114 ? ? -94.97 36.71 25 5 ILE A 119 ? ? -73.61 42.24 26 5 SER A 123 ? ? -162.08 95.25 27 5 LEU A 140 ? ? -77.72 37.48 28 6 HIS A 50 ? ? -90.90 -72.32 29 6 ASN A 70 ? ? -150.32 9.50 30 6 CYS A 91 ? ? -176.27 128.20 31 6 ASN A 111 ? ? 53.54 15.44 32 6 PRO A 116 ? ? -73.29 -169.56 33 6 ILE A 119 ? ? -67.65 20.14 34 7 ARG A 10 ? ? -74.83 28.32 35 8 ARG A 51 ? ? 59.65 13.63 36 8 ASN A 70 ? ? -154.63 18.29 37 8 ARG A 93 ? ? -90.45 31.28 38 8 SER A 109 ? ? 73.74 41.71 39 9 ASN A 70 ? ? -156.49 11.75 40 10 ARG A 10 ? ? -161.15 88.99 41 10 ASN A 70 ? ? -155.84 19.19 42 10 THR A 120 ? ? -165.58 119.29 43 10 TYR B 16 ? ? -103.39 73.92 44 11 GLN A 42 ? ? -66.20 0.23 45 11 HIS A 50 ? ? -98.43 -62.91 46 11 ARG A 64 ? ? -170.10 133.42 47 11 ASN A 108 ? ? 53.47 74.72 48 11 GLU A 114 ? ? -86.40 47.76 49 12 ASP A 15 ? ? -69.87 6.64 50 12 ASN A 16 ? ? -149.59 20.57 51 12 LEU A 49 ? ? -143.72 -11.92 52 12 ASP A 68 ? ? -163.60 -168.01 53 12 ASN A 70 ? ? -152.22 8.19 54 12 CYS A 91 ? ? -172.33 140.06 55 12 ASN A 111 ? ? -76.80 38.92 56 13 SER A 69 ? ? -58.16 109.73 57 13 ASN A 70 ? ? 49.36 27.73 58 13 CYS A 91 ? ? -170.55 120.21 59 14 ASN A 70 ? ? 57.02 18.66 60 14 ILE A 110 ? ? -87.33 -159.54 61 14 ASN A 111 ? ? -67.85 36.09 62 15 ASN A 16 ? ? -143.52 17.66 63 15 HIS A 50 ? ? -73.03 -78.50 64 15 ASN A 70 ? ? -157.39 5.85 65 15 SER A 109 ? ? -58.52 106.58 66 16 SER A 12 ? ? -79.32 37.47 67 16 ASP A 15 ? ? -64.92 2.67 68 16 ASN A 70 ? ? -154.58 11.52 69 16 ALA A 126 ? ? -78.77 40.96 70 17 SER A 5 ? ? -167.08 118.04 71 17 ASN A 9 ? ? -175.12 143.07 72 17 ARG A 51 ? ? 59.92 8.15 73 17 ARG A 52 ? ? -96.40 -86.16 74 17 ASN A 70 ? ? -152.68 10.65 75 17 CYS A 91 ? ? -164.92 114.85 76 17 SER A 109 ? ? -27.40 109.41 77 17 GLU A 114 ? ? -103.33 -168.16 78 17 THR A 120 ? ? 49.70 28.78 79 18 ASN A 9 ? ? -145.38 -43.76 80 18 ASP A 11 ? ? -149.30 -62.12 81 18 GLN A 42 ? ? -68.32 0.05 82 18 ARG A 64 ? ? -176.24 140.51 83 18 ASN A 70 ? ? -158.19 10.87 84 18 ILE A 110 ? ? -100.05 67.18 85 18 ASN A 111 ? ? 38.85 53.46 86 19 ASN A 70 ? ? 53.33 15.16 87 19 SER A 109 ? ? -17.51 91.75 88 20 SER A 5 ? ? -162.52 117.57 89 20 HIS A 50 ? ? -85.10 -71.68 90 20 ASN A 70 ? ? -154.13 10.00 91 20 ILE A 110 ? ? -86.25 -138.33 92 20 GLU A 114 ? ? -68.09 80.58 93 20 CYS B 9 ? ? -92.03 -74.27 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 12 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 93 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.140 _pdbx_validate_planes.type 'SIDE CHAIN' #