HEADER RNA 01-MAR-10 2KUV TITLE SOLUTION STRUCTURE OF K10 TLS RNA (GC MUTANT IN LOWER HELIX) COMPND MOL_ID: 1; COMPND 2 MOLECULE: K10 TLS RNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: THE WILD-TYPE SEQUENCE OF K10 TLS RNA IS COMPND 7 'GGCUUGAUUGUAUUUUUAAAUUAAUUCUUAAAAACUACAAAUUAAGCC'. THE MUTATION IN COMPND 8 THE GC MUTANT IN LOWER HELIX RNA ARE: U5C, U43C, U44G. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 4 ORGANISM_COMMON: FRUIT FLY; SOURCE 5 ORGANISM_TAXID: 7227; SOURCE 6 OTHER_DETAILS: PREPARED BY IN VITRO TRANSCRIPTION USING T7 RNA SOURCE 7 POLYMERASE KEYWDS RNA TRANSPORT, RNA HAIRPIN, RNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ,P.J.LUKAVSKY REVDAT 3 16-MAR-22 2KUV 1 REMARK REVDAT 2 16-JUN-10 2KUV 1 JRNL REVDAT 1 19-MAY-10 2KUV 0 JRNL AUTH S.L.BULLOCK,I.RINGEL,D.ISH-HOROWICZ,P.J.LUKAVSKY JRNL TITL A'-FORM RNA HELICES ARE REQUIRED FOR CYTOPLASMIC MRNA JRNL TITL 2 TRANSPORT IN DROSOPHILA. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 703 2010 JRNL REFN ISSN 1545-9993 JRNL PMID 20473315 JRNL DOI 10.1038/NSMB.1813 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, X-PLOR NIH REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), SCHWIETERS, KUSZEWSKI, REMARK 3 TJANDRA AND CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KUV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAR-10. REMARK 100 THE DEPOSITION ID IS D_1000101601. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM RNA (48-MER)-1, 95% REMARK 210 H2O/5% D2O; 1.0 MM RNA (48-MER)- REMARK 210 2, 100% D2O; 0.6 MM [U-99% 13C; REMARK 210 U-99% 15N] RNA (48-MER)-3, 95% REMARK 210 H2O/5% D2O; 0.6 MM [U-99% 13C; U- REMARK 210 99% 15N] RNA (48-MER)-4, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D DQF-COSY; 2D HP COSY; 2D HNN REMARK 210 COSY; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 13C NOESY-HSQC; 3D HCP; REMARK 210 3D 13C HMQC TOCSY; 2D 13C CT- REMARK 210 TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, RESTRAINED REMARK 210 MOLECULAR DYNAMICS WITH RDCS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED USING TRIPLE RESONANCE, REMARK 210 MULTIDIMENSIONAL NMR SPECTROSCOPY AND TROSY-TYPE EXPERIMENTS REMARK 210 TO MEASURE RESIDUAL DIPOLAR COUPLINGS REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HO2' U A 28 O4' U A 29 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 U A 26 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 U A 36 C5' - C4' - C3' ANGL. DEV. = -8.5 DEGREES REMARK 500 4 U A 17 O4' - C1' - N1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 U A 26 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 5 U A 36 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 6 U A 36 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 7 U A 36 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 9 C A 27 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 10 U A 36 C5' - C4' - C3' ANGL. DEV. = -8.6 DEGREES REMARK 500 10 C A 47 O4' - C1' - N1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 10 C A 47 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KE6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF K10 TLS RNA REMARK 900 RELATED ID: 2KUR RELATED DB: PDB REMARK 900 K10 TLS RNA (AU MUTANT IN UPPER HELIX) REMARK 900 RELATED ID: 2KUU RELATED DB: PDB REMARK 900 K10 TLS RNA (GC MUTANT IN UPPER HELIX) REMARK 900 RELATED ID: 2KUW RELATED DB: PDB REMARK 900 K10 TLS RNA (A-FORM MUTANT IN LOWER HELIX) DBREF 2KUV A 1 48 PDB 2KUV 2KUV 1 48 SEQRES 1 A 48 G G C U C G A U U G U A U SEQRES 2 A 48 U U U U A A A U U A A U U SEQRES 3 A 48 C U U A A A A A C U A C A SEQRES 4 A 48 A A U C G A G C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1