data_2KV0 # _entry.id 2KV0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KV0 pdb_00002kv0 10.2210/pdb2kv0/pdb RCSB RCSB101606 ? ? WWPDB D_1000101606 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2011-01-19 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KV0 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-03 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 2KUZ _pdbx_database_related.db_name PDB _pdbx_database_related.details 'reference duplex' # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dallmann, A.' 1 'Dehmel, L.' 2 'Peters, T.' 3 'Muegge, C.' 4 'Griesinger, C.P.' 5 'Tuma, J.' 6 'Ernsting, N.P.' 7 # _citation.id primary _citation.title '2-Aminopurine incorporation perturbs the dynamics and structure of DNA.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 49 _citation.page_first 5989 _citation.page_last 5992 _citation.year 2010 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20632340 _citation.pdbx_database_id_DOI 10.1002/anie.201001312 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dallmann, A.' 1 ? primary 'Dehmel, L.' 2 ? primary 'Peters, T.' 3 ? primary 'Mugge, C.' 4 ? primary 'Griesinger, C.' 5 ? primary 'Tuma, J.' 6 ? primary 'Ernsting, N.P.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*CP*AP*(2PR)P*AP*CP*GP*TP*CP*G)-3') ; 3976.599 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*CP*GP*AP*CP*GP*TP*TP*TP*GP*CP*AP*GP*C)-3') ; 3967.585 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DG)(DC)(DT)(DG)(DC)(DA)(2PR)(DA)(DC)(DG)(DT)(DC)(DG)' GCTGCAGACGTCG A ? 2 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DC)(DG)(DT)(DT)(DT)(DG)(DC)(DA)(DG)(DC)' CGACGTTTGCAGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DT n 1 4 DG n 1 5 DC n 1 6 DA n 1 7 2PR n 1 8 DA n 1 9 DC n 1 10 DG n 1 11 DT n 1 12 DC n 1 13 DG n 2 1 DC n 2 2 DG n 2 3 DA n 2 4 DC n 2 5 DG n 2 6 DT n 2 7 DT n 2 8 DT n 2 9 DG n 2 10 DC n 2 11 DA n 2 12 DG n 2 13 DC n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 2PR 'DNA linking' n "2-AMINO-9-[2-DEOXYRIBOFURANOSYL]-9H-PURINE-5'-MONOPHOSPHATE" "2-AMINOPURINE-2'-DEOXYRIBO-5'-MONOPHOSPHATE" 'C10 H14 N5 O6 P' 331.222 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DC 5 5 5 DC DC A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 2PR 7 7 7 2PR 2PR A . n A 1 8 DA 8 8 8 DA DA A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 DG 10 10 10 DG DG A . n A 1 11 DT 11 11 11 DT DT A . n A 1 12 DC 12 12 12 DC DC A . n A 1 13 DG 13 13 13 DG DG A . n B 2 1 DC 1 14 14 DC DC B . n B 2 2 DG 2 15 15 DG DG B . n B 2 3 DA 3 16 16 DA DA B . n B 2 4 DC 4 17 17 DC DC B . n B 2 5 DG 5 18 18 DG DG B . n B 2 6 DT 6 19 19 DT DT B . n B 2 7 DT 7 20 20 DT DT B . n B 2 8 DT 8 21 21 DT DT B . n B 2 9 DG 9 22 22 DG DG B . n B 2 10 DC 10 23 23 DC DC B . n B 2 11 DA 11 24 24 DA DA B . n B 2 12 DG 12 25 25 DG DG B . n B 2 13 DC 13 26 26 DC DC B . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KV0 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KV0 _struct.title '2-Aminopurine incorporation perturbs the dynamics and structure of DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 2KV0 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, 2-Aminopurine, fluorophore, structure perturbation' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 PDB 2KV0 2KV0 1 ? ? ? 2 PDB 2KV0 2KV0 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KV0 A 1 ? 13 ? 2KV0 1 ? 13 ? 1 13 2 2 2KV0 B 1 ? 13 ? 2KV0 14 ? 26 ? 14 26 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DA 6 "O3'" ? ? ? 1_555 A 2PR 7 P ? ? A DA 6 A 2PR 7 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale2 covale both ? A 2PR 7 "O3'" ? ? ? 1_555 A DA 8 P ? ? A 2PR 7 A DA 8 1_555 ? ? ? ? ? ? ? 1.609 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 13 N3 ? ? A DG 1 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 13 O2 ? ? A DG 1 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 13 N4 ? ? A DG 1 B DC 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 2 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 2 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 2 B DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 11 N1 ? ? A DT 3 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 11 N6 ? ? A DT 3 B DA 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 10 N3 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 10 O2 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 10 N4 ? ? A DG 4 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 5 B DG 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 6 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 6 B DT 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A 2PR 7 N1 ? ? ? 1_555 B DT 7 O2 ? ? A 2PR 7 B DT 20 1_555 ? ? ? ? ? ? '2PR-DT MISPAIR' ? ? ? hydrog18 hydrog ? ? A DA 8 N1 ? ? ? 1_555 B DT 6 N3 ? ? A DA 8 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DA 8 N6 ? ? ? 1_555 B DT 6 O4 ? ? A DA 8 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 5 N1 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 5 O6 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 5 N2 ? ? A DC 9 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 10 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 10 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 10 B DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DT 11 N3 ? ? ? 1_555 B DA 3 N1 ? ? A DT 11 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 11 O4 ? ? ? 1_555 B DA 3 N6 ? ? A DT 11 B DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 12 B DG 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 13 B DC 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.59 2 1 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 3 1 H22 A DG 10 ? ? O2 B DC 17 ? ? 1.60 4 1 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 5 1 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 6 1 O2 A DC 5 ? ? H22 B DG 22 ? ? 1.60 7 2 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 8 2 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 9 2 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 10 2 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 11 2 H22 A DG 10 ? ? O2 B DC 17 ? ? 1.60 12 3 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 13 3 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 14 3 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 15 3 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 16 4 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 17 4 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 18 4 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 19 4 H22 A DG 10 ? ? O2 B DC 17 ? ? 1.60 20 4 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 21 5 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 22 5 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 23 5 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 24 5 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 25 6 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 26 6 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 27 6 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 28 6 O2 A DC 5 ? ? H22 B DG 22 ? ? 1.60 29 6 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 30 6 H22 A DG 4 ? ? O2 B DC 23 ? ? 1.60 31 7 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 32 7 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 33 7 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 34 7 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 35 8 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 36 8 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 37 8 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 38 8 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 39 9 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 40 9 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 41 9 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 42 9 H22 A DG 10 ? ? O2 B DC 17 ? ? 1.60 43 9 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 44 10 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 45 10 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 46 10 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 47 10 H22 A DG 10 ? ? O2 B DC 17 ? ? 1.60 48 10 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 49 11 H22 A DG 13 ? ? O2 B DC 14 ? ? 1.60 50 11 O2 A DC 2 ? ? H22 B DG 25 ? ? 1.60 51 11 H22 A DG 1 ? ? O2 B DC 26 ? ? 1.60 52 11 O2 A DC 9 ? ? H22 B DG 18 ? ? 1.60 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id 2PR _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id 2PR _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KV0 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KV0 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '3 mM DNAmodstrand, 3 mM DNAstrandII, 10 mM sodium phosphate, 150 mM sodium chloride, 100% D2O' 1 '100% D2O' '3 mM DNAmodstrand, 3 mM DNAstrandII, 10 mM sodium phosphate, 150 mM sodium chloride, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '3 mM DNAmodstrand, 3 mM DNAstrandII, 10 mM sodium phosphate, 150 mM sodium chloride, 20 mg/mL Pf1 phage, 100% D2O' 3 '100% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id DNAmodstrand 3 mM ? 1 DNAstrandII 3 mM ? 1 'sodium phosphate' 10 mM ? 1 'sodium chloride' 150 mM ? 1 DNAmodstrand 3 mM ? 2 DNAstrandII 3 mM ? 2 'sodium phosphate' 10 mM ? 2 'sodium chloride' 150 mM ? 2 DNAmodstrand 3 mM ? 3 DNAstrandII 3 mM ? 3 'sodium phosphate' 10 mM ? 3 'sodium chloride' 150 mM ? 3 'Pf1 phage' 20 mg/mL ? 3 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-13C HMQC' 1 2 3 '2D 1H-13C HMQC' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '2D DQF-COSY' 1 5 1 '2D 1H-1H TOCSY' 1 6 2 '2D 1H-1H NOESY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KV0 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 78 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 333 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 145 _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 188 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2KV0 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;Torsion angle dynamics,50K at 20,000K with subsequent gradual cooling to 25K in 154 steps of 0.5 ps length (34 steps to cool down to 3,000 K, followed by 120 steps to reach the end temperature) and a final minimization (3,000 steps). ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Schwieters, C. et al.' refinement 'X-PLOR NIH' 2.17 1 'Schwieters, C. et al.' 'geometry optimization' 'X-PLOR NIH' 2.17 2 'Schwieters, C. et al.' 'structure solution' 'X-PLOR NIH' 2.17 3 'Keller, R. et al.' 'chemical shift assignment' CARA 1.8.4 4 'Keller, R. et al.' 'peak picking' CARA 1.8.4 5 'Keller, R. et al.' 'data analysis' CARA 1.8.4 6 'Delsuc, M.A. et al.' 'data analysis' Gifa 4 7 'Bruker Biospin' collection TopSpin 2.0 8 'Bruker Biospin' processing TopSpin 2.0 9 'Lu, X.J. et al.' 'data analysis' 3DNA ? 10 'Zweckstetter, M. et al.' 'data analysis' PALES ? 11 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 2PR OP3 O N N 1 2PR P P N N 2 2PR OP1 O N N 3 2PR OP2 O N N 4 2PR "O5'" O N N 5 2PR "C5'" C N N 6 2PR "C4'" C N R 7 2PR "O4'" O N N 8 2PR "C3'" C N S 9 2PR "O3'" O N N 10 2PR "C2'" C N N 11 2PR "C1'" C N R 12 2PR N9 N Y N 13 2PR C8 C Y N 14 2PR N7 N Y N 15 2PR C5 C Y N 16 2PR C6 C Y N 17 2PR N1 N Y N 18 2PR C2 C Y N 19 2PR N2 N N N 20 2PR N3 N Y N 21 2PR C4 C Y N 22 2PR HOP3 H N N 23 2PR HOP2 H N N 24 2PR "H5'" H N N 25 2PR "H5''" H N N 26 2PR "H4'" H N N 27 2PR "H3'" H N N 28 2PR "HO3'" H N N 29 2PR "H2'" H N N 30 2PR "H2''" H N N 31 2PR "H1'" H N N 32 2PR H8 H N N 33 2PR H6 H N N 34 2PR HN21 H N N 35 2PR HN22 H N N 36 DA OP3 O N N 37 DA P P N N 38 DA OP1 O N N 39 DA OP2 O N N 40 DA "O5'" O N N 41 DA "C5'" C N N 42 DA "C4'" C N R 43 DA "O4'" O N N 44 DA "C3'" C N S 45 DA "O3'" O N N 46 DA "C2'" C N N 47 DA "C1'" C N R 48 DA N9 N Y N 49 DA C8 C Y N 50 DA N7 N Y N 51 DA C5 C Y N 52 DA C6 C Y N 53 DA N6 N N N 54 DA N1 N Y N 55 DA C2 C Y N 56 DA N3 N Y N 57 DA C4 C Y N 58 DA HOP3 H N N 59 DA HOP2 H N N 60 DA "H5'" H N N 61 DA "H5''" H N N 62 DA "H4'" H N N 63 DA "H3'" H N N 64 DA "HO3'" H N N 65 DA "H2'" H N N 66 DA "H2''" H N N 67 DA "H1'" H N N 68 DA H8 H N N 69 DA H61 H N N 70 DA H62 H N N 71 DA H2 H N N 72 DC OP3 O N N 73 DC P P N N 74 DC OP1 O N N 75 DC OP2 O N N 76 DC "O5'" O N N 77 DC "C5'" C N N 78 DC "C4'" C N R 79 DC "O4'" O N N 80 DC "C3'" C N S 81 DC "O3'" O N N 82 DC "C2'" C N N 83 DC "C1'" C N R 84 DC N1 N N N 85 DC C2 C N N 86 DC O2 O N N 87 DC N3 N N N 88 DC C4 C N N 89 DC N4 N N N 90 DC C5 C N N 91 DC C6 C N N 92 DC HOP3 H N N 93 DC HOP2 H N N 94 DC "H5'" H N N 95 DC "H5''" H N N 96 DC "H4'" H N N 97 DC "H3'" H N N 98 DC "HO3'" H N N 99 DC "H2'" H N N 100 DC "H2''" H N N 101 DC "H1'" H N N 102 DC H41 H N N 103 DC H42 H N N 104 DC H5 H N N 105 DC H6 H N N 106 DG OP3 O N N 107 DG P P N N 108 DG OP1 O N N 109 DG OP2 O N N 110 DG "O5'" O N N 111 DG "C5'" C N N 112 DG "C4'" C N R 113 DG "O4'" O N N 114 DG "C3'" C N S 115 DG "O3'" O N N 116 DG "C2'" C N N 117 DG "C1'" C N R 118 DG N9 N Y N 119 DG C8 C Y N 120 DG N7 N Y N 121 DG C5 C Y N 122 DG C6 C N N 123 DG O6 O N N 124 DG N1 N N N 125 DG C2 C N N 126 DG N2 N N N 127 DG N3 N N N 128 DG C4 C Y N 129 DG HOP3 H N N 130 DG HOP2 H N N 131 DG "H5'" H N N 132 DG "H5''" H N N 133 DG "H4'" H N N 134 DG "H3'" H N N 135 DG "HO3'" H N N 136 DG "H2'" H N N 137 DG "H2''" H N N 138 DG "H1'" H N N 139 DG H8 H N N 140 DG H1 H N N 141 DG H21 H N N 142 DG H22 H N N 143 DT OP3 O N N 144 DT P P N N 145 DT OP1 O N N 146 DT OP2 O N N 147 DT "O5'" O N N 148 DT "C5'" C N N 149 DT "C4'" C N R 150 DT "O4'" O N N 151 DT "C3'" C N S 152 DT "O3'" O N N 153 DT "C2'" C N N 154 DT "C1'" C N R 155 DT N1 N N N 156 DT C2 C N N 157 DT O2 O N N 158 DT N3 N N N 159 DT C4 C N N 160 DT O4 O N N 161 DT C5 C N N 162 DT C7 C N N 163 DT C6 C N N 164 DT HOP3 H N N 165 DT HOP2 H N N 166 DT "H5'" H N N 167 DT "H5''" H N N 168 DT "H4'" H N N 169 DT "H3'" H N N 170 DT "HO3'" H N N 171 DT "H2'" H N N 172 DT "H2''" H N N 173 DT "H1'" H N N 174 DT H3 H N N 175 DT H71 H N N 176 DT H72 H N N 177 DT H73 H N N 178 DT H6 H N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2PR OP3 P sing N N 1 2PR OP3 HOP3 sing N N 2 2PR P OP1 doub N N 3 2PR P OP2 sing N N 4 2PR P "O5'" sing N N 5 2PR OP2 HOP2 sing N N 6 2PR "O5'" "C5'" sing N N 7 2PR "C5'" "C4'" sing N N 8 2PR "C5'" "H5'" sing N N 9 2PR "C5'" "H5''" sing N N 10 2PR "C4'" "O4'" sing N N 11 2PR "C4'" "C3'" sing N N 12 2PR "C4'" "H4'" sing N N 13 2PR "O4'" "C1'" sing N N 14 2PR "C3'" "O3'" sing N N 15 2PR "C3'" "C2'" sing N N 16 2PR "C3'" "H3'" sing N N 17 2PR "O3'" "HO3'" sing N N 18 2PR "C2'" "C1'" sing N N 19 2PR "C2'" "H2'" sing N N 20 2PR "C2'" "H2''" sing N N 21 2PR "C1'" N9 sing N N 22 2PR "C1'" "H1'" sing N N 23 2PR N9 C8 sing Y N 24 2PR N9 C4 sing Y N 25 2PR C8 N7 doub Y N 26 2PR C8 H8 sing N N 27 2PR N7 C5 sing Y N 28 2PR C5 C6 sing Y N 29 2PR C5 C4 doub Y N 30 2PR C6 N1 doub Y N 31 2PR C6 H6 sing N N 32 2PR N1 C2 sing Y N 33 2PR C2 N2 sing N N 34 2PR C2 N3 doub Y N 35 2PR N2 HN21 sing N N 36 2PR N2 HN22 sing N N 37 2PR N3 C4 sing Y N 38 DA OP3 P sing N N 39 DA OP3 HOP3 sing N N 40 DA P OP1 doub N N 41 DA P OP2 sing N N 42 DA P "O5'" sing N N 43 DA OP2 HOP2 sing N N 44 DA "O5'" "C5'" sing N N 45 DA "C5'" "C4'" sing N N 46 DA "C5'" "H5'" sing N N 47 DA "C5'" "H5''" sing N N 48 DA "C4'" "O4'" sing N N 49 DA "C4'" "C3'" sing N N 50 DA "C4'" "H4'" sing N N 51 DA "O4'" "C1'" sing N N 52 DA "C3'" "O3'" sing N N 53 DA "C3'" "C2'" sing N N 54 DA "C3'" "H3'" sing N N 55 DA "O3'" "HO3'" sing N N 56 DA "C2'" "C1'" sing N N 57 DA "C2'" "H2'" sing N N 58 DA "C2'" "H2''" sing N N 59 DA "C1'" N9 sing N N 60 DA "C1'" "H1'" sing N N 61 DA N9 C8 sing Y N 62 DA N9 C4 sing Y N 63 DA C8 N7 doub Y N 64 DA C8 H8 sing N N 65 DA N7 C5 sing Y N 66 DA C5 C6 sing Y N 67 DA C5 C4 doub Y N 68 DA C6 N6 sing N N 69 DA C6 N1 doub Y N 70 DA N6 H61 sing N N 71 DA N6 H62 sing N N 72 DA N1 C2 sing Y N 73 DA C2 N3 doub Y N 74 DA C2 H2 sing N N 75 DA N3 C4 sing Y N 76 DC OP3 P sing N N 77 DC OP3 HOP3 sing N N 78 DC P OP1 doub N N 79 DC P OP2 sing N N 80 DC P "O5'" sing N N 81 DC OP2 HOP2 sing N N 82 DC "O5'" "C5'" sing N N 83 DC "C5'" "C4'" sing N N 84 DC "C5'" "H5'" sing N N 85 DC "C5'" "H5''" sing N N 86 DC "C4'" "O4'" sing N N 87 DC "C4'" "C3'" sing N N 88 DC "C4'" "H4'" sing N N 89 DC "O4'" "C1'" sing N N 90 DC "C3'" "O3'" sing N N 91 DC "C3'" "C2'" sing N N 92 DC "C3'" "H3'" sing N N 93 DC "O3'" "HO3'" sing N N 94 DC "C2'" "C1'" sing N N 95 DC "C2'" "H2'" sing N N 96 DC "C2'" "H2''" sing N N 97 DC "C1'" N1 sing N N 98 DC "C1'" "H1'" sing N N 99 DC N1 C2 sing N N 100 DC N1 C6 sing N N 101 DC C2 O2 doub N N 102 DC C2 N3 sing N N 103 DC N3 C4 doub N N 104 DC C4 N4 sing N N 105 DC C4 C5 sing N N 106 DC N4 H41 sing N N 107 DC N4 H42 sing N N 108 DC C5 C6 doub N N 109 DC C5 H5 sing N N 110 DC C6 H6 sing N N 111 DG OP3 P sing N N 112 DG OP3 HOP3 sing N N 113 DG P OP1 doub N N 114 DG P OP2 sing N N 115 DG P "O5'" sing N N 116 DG OP2 HOP2 sing N N 117 DG "O5'" "C5'" sing N N 118 DG "C5'" "C4'" sing N N 119 DG "C5'" "H5'" sing N N 120 DG "C5'" "H5''" sing N N 121 DG "C4'" "O4'" sing N N 122 DG "C4'" "C3'" sing N N 123 DG "C4'" "H4'" sing N N 124 DG "O4'" "C1'" sing N N 125 DG "C3'" "O3'" sing N N 126 DG "C3'" "C2'" sing N N 127 DG "C3'" "H3'" sing N N 128 DG "O3'" "HO3'" sing N N 129 DG "C2'" "C1'" sing N N 130 DG "C2'" "H2'" sing N N 131 DG "C2'" "H2''" sing N N 132 DG "C1'" N9 sing N N 133 DG "C1'" "H1'" sing N N 134 DG N9 C8 sing Y N 135 DG N9 C4 sing Y N 136 DG C8 N7 doub Y N 137 DG C8 H8 sing N N 138 DG N7 C5 sing Y N 139 DG C5 C6 sing N N 140 DG C5 C4 doub Y N 141 DG C6 O6 doub N N 142 DG C6 N1 sing N N 143 DG N1 C2 sing N N 144 DG N1 H1 sing N N 145 DG C2 N2 sing N N 146 DG C2 N3 doub N N 147 DG N2 H21 sing N N 148 DG N2 H22 sing N N 149 DG N3 C4 sing N N 150 DT OP3 P sing N N 151 DT OP3 HOP3 sing N N 152 DT P OP1 doub N N 153 DT P OP2 sing N N 154 DT P "O5'" sing N N 155 DT OP2 HOP2 sing N N 156 DT "O5'" "C5'" sing N N 157 DT "C5'" "C4'" sing N N 158 DT "C5'" "H5'" sing N N 159 DT "C5'" "H5''" sing N N 160 DT "C4'" "O4'" sing N N 161 DT "C4'" "C3'" sing N N 162 DT "C4'" "H4'" sing N N 163 DT "O4'" "C1'" sing N N 164 DT "C3'" "O3'" sing N N 165 DT "C3'" "C2'" sing N N 166 DT "C3'" "H3'" sing N N 167 DT "O3'" "HO3'" sing N N 168 DT "C2'" "C1'" sing N N 169 DT "C2'" "H2'" sing N N 170 DT "C2'" "H2''" sing N N 171 DT "C1'" N1 sing N N 172 DT "C1'" "H1'" sing N N 173 DT N1 C2 sing N N 174 DT N1 C6 sing N N 175 DT C2 O2 doub N N 176 DT C2 N3 sing N N 177 DT N3 C4 sing N N 178 DT N3 H3 sing N N 179 DT C4 O4 doub N N 180 DT C4 C5 sing N N 181 DT C5 C7 sing N N 182 DT C5 C6 doub N N 183 DT C7 H71 sing N N 184 DT C7 H72 sing N N 185 DT C7 H73 sing N N 186 DT C6 H6 sing N N 187 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KV0 'double helix' 2KV0 'b-form double helix' 2KV0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 13 1_555 -0.406 -0.258 -0.024 -2.199 0.116 1.658 1 A_DG1:DC26_B A 1 ? B 26 ? 19 1 1 A DC 2 1_555 B DG 12 1_555 0.372 -0.269 0.085 -2.822 -1.189 1.268 2 A_DC2:DG25_B A 2 ? B 25 ? 19 1 1 A DT 3 1_555 B DA 11 1_555 -0.061 -0.267 0.005 -3.943 -2.620 -2.704 3 A_DT3:DA24_B A 3 ? B 24 ? 20 1 1 A DG 4 1_555 B DC 10 1_555 -0.393 -0.270 0.207 2.827 2.759 1.630 4 A_DG4:DC23_B A 4 ? B 23 ? 19 1 1 A DC 5 1_555 B DG 9 1_555 0.376 -0.268 -0.029 4.228 1.169 1.369 5 A_DC5:DG22_B A 5 ? B 22 ? 19 1 1 A DA 6 1_555 B DT 8 1_555 0.024 -0.276 -0.092 3.055 -3.354 -2.596 6 A_DA6:DT21_B A 6 ? B 21 ? 20 1 1 A 2PR 7 1_555 B DT 7 1_555 0.009 -0.386 -0.157 2.666 -0.892 -5.587 7 A_2PR7:DT20_B A 7 ? B 20 ? ? 1 1 A DA 8 1_555 B DT 6 1_555 0.016 -0.274 -0.063 3.756 -2.718 -2.544 8 A_DA8:DT19_B A 8 ? B 19 ? 20 1 1 A DC 9 1_555 B DG 5 1_555 0.408 -0.257 -0.139 6.251 -2.862 1.709 9 A_DC9:DG18_B A 9 ? B 18 ? 19 1 1 A DG 10 1_555 B DC 4 1_555 -0.423 -0.257 0.095 1.137 1.212 1.843 10 A_DG10:DC17_B A 10 ? B 17 ? 19 1 1 A DT 11 1_555 B DA 3 1_555 -0.064 -0.269 0.101 1.840 -3.022 -3.014 11 A_DT11:DA16_B A 11 ? B 16 ? 20 1 1 A DC 12 1_555 B DG 2 1_555 0.412 -0.270 -0.078 4.030 -10.521 2.389 12 A_DC12:DG15_B A 12 ? B 15 ? 19 1 1 A DG 13 1_555 B DC 1 1_555 -0.381 -0.266 -0.054 -2.906 -1.221 1.352 13 A_DG13:DC14_B A 13 ? B 14 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 13 1_555 A DC 2 1_555 B DG 12 1_555 -0.099 -0.379 3.186 -0.804 -1.476 42.606 -0.376 0.057 3.198 -2.030 1.105 42.638 1 AA_DG1DC2:DG25DC26_BB A 1 ? B 26 ? A 2 ? B 25 ? 1 A DC 2 1_555 B DG 12 1_555 A DT 3 1_555 B DA 11 1_555 -0.174 -1.106 3.129 1.868 -0.340 31.858 -1.953 0.641 3.125 -0.619 -3.399 31.913 2 AA_DC2DT3:DA24DG25_BB A 2 ? B 25 ? A 3 ? B 24 ? 1 A DT 3 1_555 B DA 11 1_555 A DG 4 1_555 B DC 10 1_555 0.466 -0.676 2.856 -1.259 0.151 35.163 -1.138 -0.933 2.835 0.250 2.083 35.185 3 AA_DT3DG4:DC23DA24_BB A 3 ? B 24 ? A 4 ? B 23 ? 1 A DG 4 1_555 B DC 10 1_555 A DC 5 1_555 B DG 9 1_555 0.064 -0.380 3.167 2.064 -1.278 41.354 -0.405 0.124 3.176 -1.808 -2.920 41.422 4 AA_DG4DC5:DG22DC23_BB A 4 ? B 23 ? A 5 ? B 22 ? 1 A DC 5 1_555 B DG 9 1_555 A DA 6 1_555 B DT 8 1_555 -0.433 -0.719 3.070 0.166 2.457 35.210 -1.525 0.738 3.012 4.056 -0.275 35.293 5 AA_DC5DA6:DT21DG22_BB A 5 ? B 22 ? A 6 ? B 21 ? 1 A DA 6 1_555 B DT 8 1_555 A 2PR 7 1_555 B DT 7 1_555 -0.350 -1.026 3.168 -1.310 0.686 34.163 -1.851 0.394 3.159 1.168 2.229 34.194 6 AA_DA62PR7:DT20DT21_BB A 6 ? B 21 ? A 7 ? B 20 ? 1 A 2PR 7 1_555 B DT 7 1_555 A DA 8 1_555 B DT 6 1_555 0.012 -0.883 3.105 -2.338 0.768 34.803 -1.583 -0.355 3.078 1.282 3.903 34.887 7 AA_2PR7DA8:DT19DT20_BB A 7 ? B 20 ? A 8 ? B 19 ? 1 A DA 8 1_555 B DT 6 1_555 A DC 9 1_555 B DG 5 1_555 -0.026 -0.737 3.144 -1.261 -2.514 37.475 -0.826 -0.119 3.184 -3.906 1.960 37.577 8 AA_DA8DC9:DG18DT19_BB A 8 ? B 19 ? A 9 ? B 18 ? 1 A DC 9 1_555 B DG 5 1_555 A DG 10 1_555 B DC 4 1_555 -0.079 -1.046 3.124 -3.346 2.405 32.522 -2.244 -0.404 3.034 4.273 5.944 32.775 9 AA_DC9DG10:DC17DG18_BB A 9 ? B 18 ? A 10 ? B 17 ? 1 A DG 10 1_555 B DC 4 1_555 A DT 11 1_555 B DA 3 1_555 -0.365 -0.866 3.219 1.010 -3.443 36.695 -0.906 0.713 3.273 -5.453 -1.599 36.864 10 AA_DG10DT11:DA16DC17_BB A 10 ? B 17 ? A 11 ? B 16 ? 1 A DT 11 1_555 B DA 3 1_555 A DC 12 1_555 B DG 2 1_555 0.263 -0.484 2.963 2.632 1.553 38.880 -0.894 -0.106 2.953 2.329 -3.947 38.995 11 AA_DT11DC12:DG15DA16_BB A 11 ? B 16 ? A 12 ? B 15 ? 1 A DC 12 1_555 B DG 2 1_555 A DG 13 1_555 B DC 1 1_555 -0.126 -1.047 3.032 -0.866 10.141 30.692 -3.463 0.092 2.568 18.530 1.583 32.297 12 AA_DC12DG13:DC14DG15_BB A 12 ? B 15 ? A 13 ? B 14 ? # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model AV _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker AV' # _atom_sites.entry_id 2KV0 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_