HEADER    PROTEIN TRANSPORT                       10-MAR-10   2KVB              
TITLE     SOLUTION STRUCTURE OF CI-MPR DOMAIN 5 BOUND TO N-ACETYLGLUCOSAMINYL 6-
TITLE    2 PHOSPHOMETHYLMANNOSIDE                                               
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: CATION-INDEPENDENT MANNOSE-6-PHOSPHATE RECEPTOR;           
COMPND   3 CHAIN: A;                                                            
COMPND   4 FRAGMENT: CI-MPR_DOMAIN5;                                            
COMPND   5 SYNONYM: CI MAN-6-P RECEPTOR, CI-MPR, M6PR, INSULIN-LIKE GROWTH      
COMPND   6 FACTOR 2 RECEPTOR, INSULIN-LIKE GROWTH FACTOR II RECEPTOR, IGF-II    
COMPND   7 RECEPTOR, 300 KDA MANNOSE 6-PHOSPHATE RECEPTOR, MPR 300;             
COMPND   8 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 ORGANISM_SCIENTIFIC: BOS TAURUS;                                     
SOURCE   3 ORGANISM_COMMON: BOVINE;                                             
SOURCE   4 ORGANISM_TAXID: 9913;                                                
SOURCE   5 GENE: IGF2R, M6P;                                                    
SOURCE   6 EXPRESSION_SYSTEM: PICHIA PASTORIS;                                  
SOURCE   7 EXPRESSION_SYSTEM_TAXID: 4922;                                       
SOURCE   8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;                              
SOURCE   9 EXPRESSION_SYSTEM_PLASMID: PPICZ-ALPHA-A                             
KEYWDS    TRANSPORT, LYSOSOME, MANNOSE, RECEPTOR, SUGAR BINDING, GLYCOPROTEIN,  
KEYWDS   2 MEMBRANE, PHOSPHOPROTEIN, TRANSMEMBRANE, DISULFIDE BOND, PROTEIN     
KEYWDS   3 TRANSPORT                                                            
EXPDTA    SOLUTION NMR                                                          
NUMMDL    20                                                                    
AUTHOR    L.J.OLSON,F.C.PETERSON,B.F.VOLKMAN,N.M.DAHMS                          
REVDAT   6   20-NOV-24 2KVB    1       REMARK                                   
REVDAT   5   14-JUN-23 2KVB    1       REMARK                                   
REVDAT   4   05-FEB-20 2KVB    1       REMARK SEQADV                            
REVDAT   3   25-DEC-13 2KVB    1       REMARK VERSN                             
REVDAT   2   28-JUL-10 2KVB    1       JRNL                                     
REVDAT   1   07-JUL-10 2KVB    0                                                
JRNL        AUTH   L.J.OLSON,F.C.PETERSON,A.CASTONGUAY,R.N.BOHNSACK,M.KUDO,     
JRNL        AUTH 2 R.R.GOTSCHALL,W.M.CANFIELD,B.F.VOLKMAN,N.M.DAHMS             
JRNL        TITL   STRUCTURAL BASIS FOR RECOGNITION OF                          
JRNL        TITL 2 PHOSPHODIESTER-CONTAINING LYSOSOMAL ENZYMES BY THE           
JRNL        TITL 3 CATION-INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR.             
JRNL        REF    PROC.NATL.ACAD.SCI.USA        V. 107 12493 2010              
JRNL        REFN                   ISSN 0027-8424                               
JRNL        PMID   20615935                                                     
JRNL        DOI    10.1073/PNAS.1004232107                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : XPLOR-NIH 2.9.3                                      
REMARK   3   AUTHORS     :                                                      
REMARK   3  SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M.                
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  STRUCTURES ARE BASED ON A TOTAL OF 2325 NOE CONSTRAINTS (416 INTRA, 
REMARK   3  546 SEQUENTIAL, 271 MEDIUM, AND 1092 LONG RANGE) AND 189 PHI AND    
REMARK   3  PSI DIHEDRAL ANGLE CONSTRAINTS.                                     
REMARK   3  AUTHOR STATES THAT THE DATA WAS COLLECTED IN THE PRESENCE OF BOTH   
REMARK   3  RECEPTOR AND LIGAND N-ACETYLGLUCOSAMINYL 6-PHOSPHOMETHYLMANNOSIDE.  
REMARK   3  HOWEVER THE LIGAND COORDINATES WERE NOT REFINED AND THEREFORE NOT   
REMARK   3  DEPOSITED                                                           
REMARK   4                                                                      
REMARK   4 2KVB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-10.                  
REMARK 100 THE DEPOSITION ID IS D_1000101617.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 308                                
REMARK 210  PH                             : 6.5                                
REMARK 210  IONIC STRENGTH                 : 150                                
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 1.25 MM [U-100% 13C; U-100% 15N]   
REMARK 210                                   CI-MPR DOMAIN5-1, 10 MM [U-2H]     
REMARK 210                                   BIS-TRIS-2, 150 MM SODIUM          
REMARK 210                                   CHLORIDE-3, 8 MM N-                
REMARK 210                                   ACETYLGLUCOSAMINYL 6-              
REMARK 210                                   PHOSPHOMETHYLMANNOSIDE-4, 95%      
REMARK 210                                   H2O, 5% D2O                        
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 3D_15N-SEPARATED_NOESY; 3D_13C     
REMARK 210                                   -SEPARATED_NOESY; 3D_13C-          
REMARK 210                                   SEPARATED_NOESY (AROMATIC)         
REMARK 210  SPECTROMETER FIELD STRENGTH    : 600 MHZ                            
REMARK 210  SPECTROMETER MODEL             : AVANCE                             
REMARK 210  SPECTROMETER MANUFACTURER      : BRUKER                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : TOPSPIN 2.1, NMRPIPE 2007, XEASY   
REMARK 210                                   1.3, GARANT 2.1, CYANA 2.1         
REMARK 210   METHOD USED                   : AUTOMATED METHODS WERE USED FOR    
REMARK 210                                   BACKBONE CHEMICAL SHIFT            
REMARK 210                                   ASSIGNMENT AND ITERATIVE NOE       
REMARK 210                                   REFINEMENT. FINAL STRUCTURES       
REMARK 210                                   WERE OBTAINED BY MOLECULAR         
REMARK 210                                   DYNAMICS IN EXPLICIT SOLVENT       
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 100                                
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 20                                 
REMARK 210 CONFORMERS, SELECTION CRITERIA  : TARGET FUNCTION                    
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1                   
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC                         
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A                                     
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: CLOSE CONTACTS                                             
REMARK 500                                                                      
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.                            
REMARK 500                                                                      
REMARK 500  ATM1  RES C  SSEQI   ATM2  RES C  SSEQI           DISTANCE          
REMARK 500   HG1  THR A   587     OD2  ASP A   596              1.60            
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: TORSION ANGLES                                             
REMARK 500                                                                      
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:            
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)                    
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-           
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400            
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        PSI       PHI                                   
REMARK 500  1 ALA A 581      153.87     72.72                                   
REMARK 500  1 PHE A 583       77.98     69.93                                   
REMARK 500  1 SER A 585       75.29     56.05                                   
REMARK 500  1 CYS A 592       41.76    -72.76                                   
REMARK 500  1 ALA A 613      175.66     70.00                                   
REMARK 500  1 THR A 618     -160.35   -117.73                                   
REMARK 500  1 CYS A 628      145.48     77.30                                   
REMARK 500  1 ALA A 660       16.37   -144.23                                   
REMARK 500  1 LYS A 661       98.69    -67.96                                   
REMARK 500  1 TYR A 679      -89.51    -55.18                                   
REMARK 500  1 ASN A 680       31.20    172.79                                   
REMARK 500  1 ALA A 699      -72.09   -135.29                                   
REMARK 500  1 GLN A 707      -75.27   -103.68                                   
REMARK 500  1 ASP A 710      -44.22   -164.86                                   
REMARK 500  1 SER A 712       -0.07     73.04                                   
REMARK 500  2 ALA A 579      -45.56   -168.09                                   
REMARK 500  2 GLU A 580      -56.33     70.73                                   
REMARK 500  2 SER A 585     -174.56    -46.89                                   
REMARK 500  2 ASP A 590     -167.55   -119.91                                   
REMARK 500  2 ALA A 613      176.42     70.18                                   
REMARK 500  2 THR A 618     -165.11   -124.16                                   
REMARK 500  2 CYS A 628      145.97     74.10                                   
REMARK 500  2 ALA A 635       -0.49   -146.72                                   
REMARK 500  2 TYR A 679      -77.49    -43.75                                   
REMARK 500  2 ASN A 680       14.84    170.44                                   
REMARK 500  2 ARG A 684       78.50     62.67                                   
REMARK 500  2 ALA A 699     -176.08   -177.38                                   
REMARK 500  2 GLN A 707      -79.96    -99.78                                   
REMARK 500  2 ASP A 710      -40.18   -158.02                                   
REMARK 500  2 SER A 712       -0.01     71.54                                   
REMARK 500  3 ALA A 579       80.18    174.14                                   
REMARK 500  3 ASP A 590     -161.52   -117.80                                   
REMARK 500  3 ASN A 591       98.04    -52.03                                   
REMARK 500  3 ALA A 613     -178.90     63.27                                   
REMARK 500  3 THR A 618     -168.34   -125.87                                   
REMARK 500  3 CYS A 628      145.85     63.89                                   
REMARK 500  3 ALA A 635      -43.46   -137.03                                   
REMARK 500  3 TYR A 679      -92.56     20.81                                   
REMARK 500  3 ASN A 680       21.30    171.24                                   
REMARK 500  3 ARG A 684       86.30     57.96                                   
REMARK 500  3 ALA A 699      -61.03   -169.45                                   
REMARK 500  3 GLN A 707      -80.39    -88.81                                   
REMARK 500  3 GLU A 708      124.37   -170.38                                   
REMARK 500  3 ASP A 710      -43.82   -154.81                                   
REMARK 500  4 GLU A 580       90.85     55.02                                   
REMARK 500  4 LEU A 584      -83.07   -117.62                                   
REMARK 500  4 ASP A 590      -98.31   -111.28                                   
REMARK 500  4 ALA A 613      159.77     69.50                                   
REMARK 500  4 THR A 618     -164.32   -120.27                                   
REMARK 500  4 CYS A 628      146.54     75.52                                   
REMARK 500                                                                      
REMARK 500 THIS ENTRY HAS     280 RAMACHANDRAN OUTLIERS.                        
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500  9 ARG A 687         0.07    SIDE CHAIN                              
REMARK 500 15 ARG A 687         0.09    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 2KVA   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 16773   RELATED DB: BMRB                                 
DBREF  2KVB A  584   725  UNP    P08169   MPRI_BOVIN     628    769             
SEQADV 2KVB GLU A  578  UNP  P08169              EXPRESSION TAG                 
SEQADV 2KVB ALA A  579  UNP  P08169              EXPRESSION TAG                 
SEQADV 2KVB GLU A  580  UNP  P08169              EXPRESSION TAG                 
SEQADV 2KVB ALA A  581  UNP  P08169              EXPRESSION TAG                 
SEQADV 2KVB GLU A  582  UNP  P08169              EXPRESSION TAG                 
SEQADV 2KVB PHE A  583  UNP  P08169              EXPRESSION TAG                 
SEQRES   1 A  148  GLU ALA GLU ALA GLU PHE LEU SER ARG THR GLU GLY ASP          
SEQRES   2 A  148  ASN CYS THR VAL PHE ASP SER GLN ALA GLY PHE SER PHE          
SEQRES   3 A  148  ASP LEU THR PRO LEU THR LYS LYS ASP ALA TYR LYS VAL          
SEQRES   4 A  148  GLU THR ASP LYS TYR GLU PHE HIS ILE ASN VAL CYS GLY          
SEQRES   5 A  148  PRO VAL SER VAL GLY ALA CYS PRO PRO ASP SER GLY ALA          
SEQRES   6 A  148  CYS GLN VAL SER ARG SER ASP ARG LYS SER TRP ASN LEU          
SEQRES   7 A  148  GLY ARG SER ASN ALA LYS LEU SER TYR TYR ASP GLY MET          
SEQRES   8 A  148  ILE GLN LEU THR TYR ARG ASP GLY THR PRO TYR ASN ASN          
SEQRES   9 A  148  GLU LYS ARG THR PRO ARG ALA THR LEU ILE THR PHE LEU          
SEQRES  10 A  148  CYS ASP ARG ASP ALA GLY VAL GLY PHE PRO GLU TYR GLN          
SEQRES  11 A  148  GLU GLU ASP ASN SER THR TYR ASN PHE ARG TRP TYR THR          
SEQRES  12 A  148  SER TYR ALA CYS PRO                                          
HELIX    1   1 SER A  721  CYS A  724  5                                   4    
SHEET    1   A 5 ARG A 586  GLU A 588  0                                        
SHEET    2   A 5 LEU A 662  TYR A 665 -1  O  TYR A 664   N  THR A 587           
SHEET    3   A 5 MET A 668  THR A 672 -1  O  GLN A 670   N  SER A 663           
SHEET    4   A 5 PRO A 686  CYS A 695 -1  O  PHE A 693   N  ILE A 669           
SHEET    5   A 5 THR A 677  PRO A 678 -1  N  THR A 677   O  ARG A 687           
SHEET    1   B 6 ARG A 586  GLU A 588  0                                        
SHEET    2   B 6 LEU A 662  TYR A 665 -1  O  TYR A 664   N  THR A 587           
SHEET    3   B 6 MET A 668  THR A 672 -1  O  GLN A 670   N  SER A 663           
SHEET    4   B 6 PRO A 686  CYS A 695 -1  O  PHE A 693   N  ILE A 669           
SHEET    5   B 6 THR A 713  THR A 720  1  O  PHE A 716   N  THR A 692           
SHEET    6   B 6 PHE A 703  GLU A 709 -1  N  GLU A 705   O  ARG A 717           
SHEET    1   C 2 THR A 593  ASP A 596  0                                        
SHEET    2   C 2 PHE A 601  ASP A 604 -1  O  PHE A 603   N  VAL A 594           
SHEET    1   D 4 TYR A 614  GLU A 617  0                                        
SHEET    2   D 4 TYR A 621  ILE A 625 -1  O  PHE A 623   N  VAL A 616           
SHEET    3   D 4 ALA A 642  SER A 646 -1  O  CYS A 643   N  HIS A 624           
SHEET    4   D 4 SER A 652  ASN A 654 -1  O  TRP A 653   N  GLN A 644           
SSBOND   1 CYS A  592    CYS A  628                          1555   1555  2.03  
SSBOND   2 CYS A  636    CYS A  643                          1555   1555  2.02  
SSBOND   3 CYS A  695    CYS A  724                          1555   1555  2.02  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
MODEL        1