HEADER UNKNOWN FUNCTION 12-MAR-10 2KVC TITLE SOLUTION STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS PROTEIN RV0543C, TITLE 2 A MEMBER OF THE DUF3349 SUPERFAMILY. SEATTLE STRUCTURAL GENOMICS TITLE 3 CENTER FOR INFECTIOUS DISEASE TARGET MYTUD.17112.A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 419947; SOURCE 4 STRAIN: ATCC 25177 / H37RA; SOURCE 5 GENE: MRA_0550, RV0543C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21PRO; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TUBERCULOSIS, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 2 FOR INFECTIOUS DISEASE, SSGCID, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR G.W.BUCHKO,C.Y.KIM,T.C.TERWILLIGER,SEATTLE STRUCTURAL GENOMICS CENTER AUTHOR 2 FOR INFECTIOUS DISEASE (SSGCID) REVDAT 4 09-FEB-11 2KVC 1 JRNL REVDAT 3 02-FEB-11 2KVC 1 JRNL REVDAT 2 31-MAR-10 2KVC 1 AUTHOR REVDAT 1 23-MAR-10 2KVC 0 JRNL AUTH G.W.BUCHKO,I.PHAN,P.J.MYLER,T.C.TERWILLIGER,C.Y.KIM JRNL TITL INAUGURAL STRUCTURE FROM THE DUF3349 SUPERFAMILY OF JRNL TITL 2 PROTEINS, MYCOBACTERIUM TUBERCULOSIS RV0543C. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 506 150 2011 JRNL REFN ISSN 0003-9861 JRNL PMID 21144816 JRNL DOI 10.1016/J.ABB.2010.12.001 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY USING CYANA (AUTOMATED NOESY ASSIGNMENTS). A TOTAL OF REMARK 3 20 STRUCTURES OUT OF 100 WITH LOWEST TARGET FUNCTION FROM THE REMARK 3 FINAL CYANA CALCULATION WERE TAKEN AND REFINED BY RESTRAINED REMARK 3 MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT WATER (CNS) REMARK 3 AFTER ADDING 1% TO THE UPPER BOUNDARY LIMIT OF THE DISTANCE REMARK 3 RESTRAINTS. FROM THIS SET OF 20 STRUCTURES 15 STRUCTURES WITH THE REMARK 3 FEWEST/FURTHEST CLOSE CONTACTS WERE SELECTED AND SUBMITTED. REMARK 4 REMARK 4 2KVC COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB101618. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM RV0543C, 300 MM SODIUM REMARK 210 CHLORIDE, 20 MM TRIS, 1 MM DTT, REMARK 210 93% H2O/7% D2O; 1-2 MM RV0543C, REMARK 210 300 MM SODIUM CHLORIDE, 20 MM REMARK 210 TRIS, 1 MM DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 C(CO)NH; 3D HN(COCA)CB; 3D HNCO; REMARK 210 2D 1H-13C HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D H(CCO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, FELIX 2007, SPARKY REMARK 210 3.115, PSVS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD1 PHE A 57 H ASP A 58 1.42 REMARK 500 HG11 VAL A 12 HD11 LEU A 51 1.46 REMARK 500 HH21 ARG A 97 OE1 GLU A 101 1.61 REMARK 500 O GLY A 63 HG1 THR A 67 1.69 REMARK 500 OD1 ASP A 94 H ASP A 95 1.69 REMARK 500 HH22 ARG A 38 OD2 ASP A 95 1.73 REMARK 500 HG SER A 28 OD1 ASP A 58 1.73 REMARK 500 HH11 ARG A 16 OD2 ASP A 56 1.77 REMARK 500 O PHE A 7 HG SER A 10 1.79 REMARK 500 O ASP A 27 H VAL A 31 1.82 REMARK 500 O VAL A 31 H LEU A 35 1.82 REMARK 500 O LEU A 35 H LEU A 39 1.84 REMARK 500 HE ARG A 38 O LEU A 93 1.85 REMARK 500 O VAL A 82 H LEU A 86 1.85 REMARK 500 O PHE A 29 HG LEU A 32 1.86 REMARK 500 O ALA A 48 H MET A 52 1.87 REMARK 500 O ALA A 13 H ALA A 17 1.88 REMARK 500 O ASP A 78 H VAL A 82 1.89 REMARK 500 OE1 GLU A 80 HH11 ARG A 83 1.89 REMARK 500 O LEU A 8 H VAL A 12 1.89 REMARK 500 O SER A 10 H TRP A 14 1.90 REMARK 500 O ILE A 11 H LEU A 15 1.91 REMARK 500 O SER A 40 H VAL A 44 1.93 REMARK 500 O VAL A 44 H ALA A 48 1.94 REMARK 500 HG2 PRO A 24 OD1 ASP A 27 1.94 REMARK 500 O ILE A 11 HG LEU A 15 1.95 REMARK 500 O GLU A 50 H LEU A 54 1.97 REMARK 500 O GLU A 43 H VAL A 47 1.98 REMARK 500 O ARG A 6 H SER A 10 1.98 REMARK 500 O ALA A 30 H LEU A 34 2.00 REMARK 500 O VAL A 47 H LEU A 51 2.00 REMARK 500 O LEU A 32 H CYS A 36 2.00 REMARK 500 O THR A 9 H ALA A 13 2.00 REMARK 500 O ALA A 46 H GLU A 50 2.00 REMARK 500 O VAL A 12 H ARG A 16 2.00 REMARK 500 O PHE A 7 H ILE A 11 2.00 REMARK 500 O GLU A 80 H ALA A 84 2.01 REMARK 500 O VAL A 79 H ARG A 83 2.01 REMARK 500 O ARG A 81 H ARG A 85 2.01 REMARK 500 O ASP A 42 H ALA A 46 2.01 REMARK 500 O HIS A 41 H LYS A 45 2.01 REMARK 500 O PRO A 76 H GLU A 80 2.01 REMARK 500 O SER A 75 H VAL A 79 2.01 REMARK 500 O PHE A 29 H ALA A 33 2.01 REMARK 500 O TRP A 14 H GLY A 18 2.01 REMARK 500 O SER A 28 H LEU A 32 2.01 REMARK 500 O ASP A 27 HG23 VAL A 31 2.03 REMARK 500 O ILE A 62 H ILE A 66 2.04 REMARK 500 O TYR A 19 H GLY A 22 2.05 REMARK 500 O LEU A 51 H GLY A 55 2.06 REMARK 500 REMARK 500 THIS ENTRY HAS 1045 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 56 44.38 -85.66 REMARK 500 1 ILE A 60 -166.95 -125.49 REMARK 500 1 ASP A 94 -168.35 -111.65 REMARK 500 1 ARG A 99 144.44 -176.03 REMARK 500 1 GLU A 101 -65.05 -97.87 REMARK 500 2 TRP A 91 95.11 65.24 REMARK 500 2 LEU A 93 51.96 -90.74 REMARK 500 2 VAL A 96 109.25 -58.36 REMARK 500 2 GLU A 100 74.79 57.40 REMARK 500 3 ARG A 99 -67.19 -126.13 REMARK 500 4 ASP A 56 45.28 -87.46 REMARK 500 4 TRP A 91 89.06 -159.68 REMARK 500 4 ASP A 94 -157.85 -162.07 REMARK 500 4 ARG A 99 -75.14 -166.66 REMARK 500 4 GLU A 100 113.06 177.83 REMARK 500 5 TRP A 91 83.73 -151.15 REMARK 500 5 ASP A 94 71.88 46.74 REMARK 500 5 ARG A 99 24.26 -160.47 REMARK 500 6 HIS A 68 79.09 -156.54 REMARK 500 7 SER A 2 -75.38 -135.79 REMARK 500 7 TRP A 91 89.03 -155.69 REMARK 500 7 ASP A 95 -168.02 -175.45 REMARK 500 7 ARG A 99 57.49 -156.73 REMARK 500 7 HIS A 102 101.79 -164.47 REMARK 500 8 ARG A 97 -156.93 -112.17 REMARK 500 9 HIS A 68 83.66 -153.87 REMARK 500 9 ARG A 99 32.95 -142.92 REMARK 500 10 TRP A 91 86.71 68.78 REMARK 500 10 PRO A 92 36.35 -85.03 REMARK 500 10 LEU A 93 -70.22 -111.09 REMARK 500 11 ASP A 56 39.24 -86.76 REMARK 500 11 GLN A 59 92.84 63.03 REMARK 500 11 ARG A 99 17.96 -144.32 REMARK 500 12 PRO A 25 29.89 -68.07 REMARK 500 12 PHE A 57 -87.06 -153.03 REMARK 500 12 ASP A 58 144.43 171.89 REMARK 500 13 PRO A 92 32.09 -95.70 REMARK 500 14 PHE A 57 -88.46 -153.77 REMARK 500 14 ASP A 58 121.87 171.71 REMARK 500 14 LEU A 93 36.98 -90.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MYTUD.17112.A RELATED DB: TARGETDB DBREF 2KVC A 4 103 UNP A5TZS3 A5TZS3_MYCTA 1 100 SEQADV 2KVC GLY A 1 UNP A5TZS3 EXPRESSION TAG SEQADV 2KVC SER A 2 UNP A5TZS3 EXPRESSION TAG SEQADV 2KVC HIS A 3 UNP A5TZS3 EXPRESSION TAG SEQRES 1 A 103 GLY SER HIS MET ASN ARG PHE LEU THR SER ILE VAL ALA SEQRES 2 A 103 TRP LEU ARG ALA GLY TYR PRO GLU GLY ILE PRO PRO THR SEQRES 3 A 103 ASP SER PHE ALA VAL LEU ALA LEU LEU CYS ARG ARG LEU SEQRES 4 A 103 SER HIS ASP GLU VAL LYS ALA VAL ALA ASN GLU LEU MET SEQRES 5 A 103 ARG LEU GLY ASP PHE ASP GLN ILE ASP ILE GLY VAL VAL SEQRES 6 A 103 ILE THR HIS PHE THR ASP GLU LEU PRO SER PRO GLU ASP SEQRES 7 A 103 VAL GLU ARG VAL ARG ALA ARG LEU ALA ALA GLN GLY TRP SEQRES 8 A 103 PRO LEU ASP ASP VAL ARG ASP ARG GLU GLU HIS ALA HELIX 1 1 HIS A 3 TYR A 19 1 17 HELIX 2 2 PRO A 24 CYS A 36 1 13 HELIX 3 3 SER A 40 GLY A 55 1 16 HELIX 4 4 ASP A 61 HIS A 68 1 8 HELIX 5 5 SER A 75 ALA A 87 1 13 HELIX 6 6 ALA A 88 GLY A 90 5 3 CISPEP 1 LEU A 73 PRO A 74 1 1.90 CISPEP 2 LEU A 73 PRO A 74 2 1.47 CISPEP 3 LEU A 73 PRO A 74 3 3.06 CISPEP 4 LEU A 73 PRO A 74 4 0.11 CISPEP 5 LEU A 73 PRO A 74 5 -1.72 CISPEP 6 LEU A 73 PRO A 74 6 3.00 CISPEP 7 LEU A 73 PRO A 74 7 3.50 CISPEP 8 LEU A 73 PRO A 74 8 0.05 CISPEP 9 LEU A 73 PRO A 74 9 0.72 CISPEP 10 LEU A 73 PRO A 74 10 -3.18 CISPEP 11 LEU A 73 PRO A 74 11 -0.27 CISPEP 12 LEU A 73 PRO A 74 12 -0.03 CISPEP 13 LEU A 73 PRO A 74 13 0.63 CISPEP 14 LEU A 73 PRO A 74 14 1.83 CISPEP 15 LEU A 73 PRO A 74 15 -0.08 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1