HEADER VIRAL PROTEIN 17-MAR-10 2KVL TITLE NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR OUTER CAPSID PROTEIN VP7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN ROTAVIRUS A; SOURCE 4 ORGANISM_COMMON: HUMAN GROUP A ROTAVIRUS; SOURCE 5 ORGANISM_TAXID: 10941; SOURCE 6 OTHER_DETAILS: THE PEPTIDE SYNTHESIZED BY AUTOMATED SOLID PHASE SOURCE 7 USING FMOC STRATEGY AND PURIFIED BY REVERSE PHASE HPLC KEYWDS CAPSID PROTEIN, HOST ENDOPLASMIC RETICULUM, VIRION, C TERMINAL KEYWDS 2 DOMAIN, MEMBRANE DESTABILISATION, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.ELAID,S.LIBERSOU,J.LEPAULT,N.MORELLET,S.BOUAZIZ REVDAT 1 30-MAR-11 2KVL 0 JRNL AUTH S.ELAID,S.LIBERSOU,J.LEPAULT,N.MORELLET,S.BOUAZIZ JRNL TITL NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF VP7 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KVL COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB101627. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM VP7 CTER DOMAIN, 1 V/V REMARK 210 CD3OH/CDCL3 METHANOL/CHLOROFORM, REMARK 210 CDCL3/CD3OH REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H TOCSY; REMARK 210 2D 1H-1H COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.113, TOPSPIN 1.3 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 5 H ILE A 6 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 2 144.29 172.28 REMARK 500 1 LEU A 4 59.13 -101.14 REMARK 500 1 ASP A 5 -58.79 173.15 REMARK 500 1 ILE A 6 92.71 -47.76 REMARK 500 1 ALA A 8 -141.65 -60.24 REMARK 500 1 THR A 11 16.86 -152.07 REMARK 500 1 ARG A 48 37.78 -86.95 REMARK 500 1 ARG A 50 40.49 -140.01 REMARK 500 2 ASP A 2 -159.66 -141.75 REMARK 500 2 LEU A 4 59.05 -94.34 REMARK 500 2 ASP A 5 -58.79 -163.39 REMARK 500 2 ILE A 6 -177.42 -69.29 REMARK 500 2 THR A 7 26.35 41.52 REMARK 500 2 ALA A 8 -153.39 -146.92 REMARK 500 2 ASP A 9 53.07 37.37 REMARK 500 2 THR A 11 25.77 -156.78 REMARK 500 2 ARG A 50 63.39 66.53 REMARK 500 3 VAL A 3 -58.57 -160.93 REMARK 500 3 ILE A 6 29.77 38.89 REMARK 500 3 ASP A 9 70.46 37.03 REMARK 500 3 ARG A 48 84.31 -66.58 REMARK 500 3 SER A 49 35.00 -88.04 REMARK 500 3 SER A 51 -82.04 -56.28 REMARK 500 4 ASP A 2 -159.71 -142.10 REMARK 500 4 ILE A 6 29.01 38.43 REMARK 500 4 THR A 7 19.73 52.95 REMARK 500 4 ALA A 8 -175.59 47.80 REMARK 500 4 ASP A 9 75.16 -107.37 REMARK 500 4 THR A 12 26.59 -153.05 REMARK 500 4 LYS A 47 45.78 -83.77 REMARK 500 4 ARG A 48 -154.54 -57.65 REMARK 500 4 SER A 49 38.31 -86.70 REMARK 500 4 ARG A 50 -37.28 -141.87 REMARK 500 4 ARG A 60 93.66 -64.17 REMARK 500 5 VAL A 3 -77.42 -147.05 REMARK 500 5 LEU A 4 31.48 35.38 REMARK 500 5 ASP A 5 -89.28 -164.80 REMARK 500 5 ALA A 8 72.02 -67.96 REMARK 500 5 ASP A 9 75.11 -107.34 REMARK 500 5 THR A 11 33.63 -177.66 REMARK 500 5 LYS A 47 85.62 -54.79 REMARK 500 5 ARG A 48 -141.17 43.19 REMARK 500 5 ARG A 50 -37.49 -149.98 REMARK 500 6 LEU A 4 76.40 -61.47 REMARK 500 6 ASP A 5 -57.92 175.08 REMARK 500 6 ILE A 6 28.89 38.57 REMARK 500 6 ALA A 8 33.79 -151.95 REMARK 500 6 THR A 12 -39.43 -177.78 REMARK 500 6 ARG A 50 45.34 37.02 REMARK 500 7 ASP A 2 114.43 -170.11 REMARK 500 REMARK 500 THIS ENTRY HAS 75 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 18 0.26 SIDE CHAIN REMARK 500 1 ARG A 21 0.16 SIDE CHAIN REMARK 500 1 ARG A 48 0.13 SIDE CHAIN REMARK 500 1 ARG A 50 0.11 SIDE CHAIN REMARK 500 1 ARG A 60 0.20 SIDE CHAIN REMARK 500 2 ARG A 18 0.32 SIDE CHAIN REMARK 500 2 ARG A 21 0.09 SIDE CHAIN REMARK 500 2 ARG A 48 0.31 SIDE CHAIN REMARK 500 2 ARG A 50 0.17 SIDE CHAIN REMARK 500 2 ARG A 60 0.29 SIDE CHAIN REMARK 500 3 ARG A 18 0.30 SIDE CHAIN REMARK 500 3 ARG A 21 0.28 SIDE CHAIN REMARK 500 3 ARG A 48 0.32 SIDE CHAIN REMARK 500 3 ARG A 50 0.22 SIDE CHAIN REMARK 500 3 ARG A 60 0.17 SIDE CHAIN REMARK 500 4 ARG A 18 0.22 SIDE CHAIN REMARK 500 4 ARG A 21 0.09 SIDE CHAIN REMARK 500 4 ARG A 48 0.20 SIDE CHAIN REMARK 500 4 ARG A 50 0.31 SIDE CHAIN REMARK 500 4 ARG A 60 0.23 SIDE CHAIN REMARK 500 5 ARG A 18 0.26 SIDE CHAIN REMARK 500 5 ARG A 21 0.29 SIDE CHAIN REMARK 500 5 ARG A 48 0.32 SIDE CHAIN REMARK 500 5 ARG A 50 0.31 SIDE CHAIN REMARK 500 5 ARG A 60 0.18 SIDE CHAIN REMARK 500 6 ARG A 18 0.28 SIDE CHAIN REMARK 500 6 ARG A 21 0.27 SIDE CHAIN REMARK 500 6 ARG A 48 0.31 SIDE CHAIN REMARK 500 6 ARG A 50 0.30 SIDE CHAIN REMARK 500 6 ARG A 60 0.32 SIDE CHAIN REMARK 500 7 ARG A 18 0.23 SIDE CHAIN REMARK 500 7 ARG A 21 0.31 SIDE CHAIN REMARK 500 7 ARG A 48 0.31 SIDE CHAIN REMARK 500 7 ARG A 50 0.32 SIDE CHAIN REMARK 500 7 ARG A 60 0.22 SIDE CHAIN REMARK 500 8 ARG A 18 0.24 SIDE CHAIN REMARK 500 8 ARG A 21 0.31 SIDE CHAIN REMARK 500 8 ARG A 50 0.24 SIDE CHAIN REMARK 500 8 ARG A 60 0.26 SIDE CHAIN REMARK 500 9 ARG A 18 0.20 SIDE CHAIN REMARK 500 9 ARG A 21 0.28 SIDE CHAIN REMARK 500 9 ARG A 48 0.12 SIDE CHAIN REMARK 500 9 ARG A 50 0.29 SIDE CHAIN REMARK 500 9 ARG A 60 0.17 SIDE CHAIN REMARK 500 10 ARG A 18 0.19 SIDE CHAIN REMARK 500 10 ARG A 21 0.30 SIDE CHAIN REMARK 500 10 ARG A 48 0.27 SIDE CHAIN REMARK 500 10 ARG A 50 0.30 SIDE CHAIN REMARK 500 10 ARG A 60 0.32 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 2KVL A 1 61 UNP Q6SKR8 Q6SKR8_9REOV 266 326 SEQRES 1 A 61 SER ASP VAL LEU ASP ILE THR ALA ASP PRO THR THR ALA SEQRES 2 A 61 PRO GLN THR GLU ARG MET MET ARG ILE ASN TRP LYS LYS SEQRES 3 A 61 TRP TRP GLN VAL PHE TYR THR VAL VAL ASP TYR VAL ASN SEQRES 4 A 61 GLN ILE ILE GLN LEU MET SER LYS ARG SER ARG SER LEU SEQRES 5 A 61 ASN SER ALA ALA PHE TYR TYR ARG VAL HELIX 1 1 ALA A 13 LYS A 47 1 35 HELIX 2 2 ARG A 50 TYR A 59 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1