data_2KVY # _entry.id 2KVY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KVY pdb_00002kvy 10.2210/pdb2kvy/pdb RCSB RCSB101640 ? ? WWPDB D_1000101640 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-05-26 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 4 'Structure model' 1 3 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list 5 3 'Structure model' struct_site 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' 4 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KVY _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-03-29 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Cosconati, S.' 1 'Marinelli, L.' 2 'Trotta, R.' 3 'Virno, A.' 4 'De Tito, S.' 5 'Romagnoli, R.' 6 'Pagano, B.' 7 'Limongelli, V.' 8 'Giancola, C.' 9 'Baraldi, P.' 10 'Mayol, L.' 11 'Novellino, E.' 12 'Randazzo, A.' 13 # _citation.id primary _citation.title 'Structural and conformational requisites in DNA quadruplex groove binding: another piece to the puzzle.' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 132 _citation.page_first 6425 _citation.page_last 6433 _citation.year 2010 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20394365 _citation.pdbx_database_id_DOI 10.1021/ja1003872 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Cosconati, S.' 1 ? primary 'Marinelli, L.' 2 ? primary 'Trotta, R.' 3 ? primary 'Virno, A.' 4 ? primary 'De Tito, S.' 5 ? primary 'Romagnoli, R.' 6 ? primary 'Pagano, B.' 7 ? primary 'Limongelli, V.' 8 ? primary 'Giancola, C.' 9 ? primary 'Baraldi, P.G.' 10 ? primary 'Mayol, L.' 11 ? primary 'Novellino, E.' 12 ? primary 'Randazzo, A.' 13 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*TP*GP*GP*GP*GP*T)-3') ; 1880.251 4 ? ? ? ? 2 non-polymer syn ;4-amino-1-methyl-N-{1-methyl-5-[(1-methyl-5-{[3-(methylamino)-3-oxopropyl]carbamoyl}-1H-pyrrol-3-yl)carbamoyl]-1H-pyrrol-3-yl}-1H-pyrrole-2-carboxamide ; 468.509 4 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DG)(DG)(DT)' _entity_poly.pdbx_seq_one_letter_code_can TGGGGT _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name ;4-amino-1-methyl-N-{1-methyl-5-[(1-methyl-5-{[3-(methylamino)-3-oxopropyl]carbamoyl}-1H-pyrrol-3-yl)carbamoyl]-1H-pyrrol-3-yl}-1H-pyrrole-2-carboxamide ; _pdbx_entity_nonpoly.comp_id KVY # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DG n 1 5 DG n 1 6 DT n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 KVY non-polymer . ;4-amino-1-methyl-N-{1-methyl-5-[(1-methyl-5-{[3-(methylamino)-3-oxopropyl]carbamoyl}-1H-pyrrol-3-yl)carbamoyl]-1H-pyrrol-3-yl}-1H-pyrrole-2-carboxamide ; ? 'C22 H28 N8 O4' 468.509 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 1 1 DT DT A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DT 6 6 6 DT DT A . n B 1 1 DT 1 7 7 DT DT B . n B 1 2 DG 2 8 8 DG DG B . n B 1 3 DG 3 9 9 DG DG B . n B 1 4 DG 4 10 10 DG DG B . n B 1 5 DG 5 11 11 DG DG B . n B 1 6 DT 6 12 12 DT DT B . n C 1 1 DT 1 13 13 DT DT C . n C 1 2 DG 2 14 14 DG DG C . n C 1 3 DG 3 15 15 DG DG C . n C 1 4 DG 4 16 16 DG DG C . n C 1 5 DG 5 17 17 DG DG C . n C 1 6 DT 6 18 18 DT DT C . n D 1 1 DT 1 19 19 DT DT D . n D 1 2 DG 2 20 20 DG DG D . n D 1 3 DG 3 21 21 DG DG D . n D 1 4 DG 4 22 22 DG DG D . n D 1 5 DG 5 23 23 DG DG D . n D 1 6 DT 6 24 24 DT DT D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KVY 1 27 27 KVY KVY A . F 2 KVY 1 28 28 KVY KVY B . G 2 KVY 1 25 25 KVY KVY C . H 2 KVY 1 26 26 KVY KVY D . # _cell.entry_id 2KVY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KVY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2KVY _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KVY _struct.title 'NMR solution structure of the 4:1 complex between an uncharged distamycin A analogue and [d(TGGGGT)]4' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KVY _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;G-Quadruplex, Coulombic Interactions, NMR titration, Distamycin A, Structure calculations, Isothermal Titration Calorimetry (ITC), DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KVY _struct_ref.pdbx_db_accession 2KVY _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code TGGGGT _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KVY A 1 ? 6 ? 2KVY 1 ? 6 ? 1 6 2 1 2KVY B 1 ? 6 ? 2KVY 7 ? 12 ? 7 12 3 1 2KVY C 1 ? 6 ? 2KVY 13 ? 18 ? 13 18 4 1 2KVY D 1 ? 6 ? 2KVY 19 ? 24 ? 19 24 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 2 N7 ? ? ? 1_555 C DG 2 N2 ? ? A DG 2 C DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? A DG 2 O6 ? ? ? 1_555 C DG 2 N1 ? ? A DG 2 C DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? A DG 2 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? A DG 2 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 3 N7 ? ? ? 1_555 C DG 3 N2 ? ? A DG 3 C DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 3 O6 ? ? ? 1_555 C DG 3 N1 ? ? A DG 3 C DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? A DG 3 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? A DG 3 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 4 N7 ? ? ? 1_555 C DG 4 N2 ? ? A DG 4 C DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 4 O6 ? ? ? 1_555 C DG 4 N1 ? ? A DG 4 C DG 16 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DG 4 O6 ? ? A DG 4 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? A DG 4 N2 ? ? ? 1_555 D DG 4 N7 ? ? A DG 4 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? A DG 4 N1 ? ? ? 1_555 D DG 5 O6 ? ? A DG 4 D DG 23 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 C DG 5 N2 ? ? A DG 5 C DG 17 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog15 hydrog ? ? B DG 2 N1 ? ? ? 1_555 C DG 2 O6 ? ? B DG 8 C DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? B DG 2 N2 ? ? ? 1_555 C DG 2 N7 ? ? B DG 8 C DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? B DG 2 N7 ? ? ? 1_555 D DG 2 N2 ? ? B DG 8 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? B DG 2 O6 ? ? ? 1_555 D DG 2 N1 ? ? B DG 8 D DG 20 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? B DG 3 N1 ? ? ? 1_555 C DG 3 O6 ? ? B DG 9 C DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? B DG 3 N2 ? ? ? 1_555 C DG 3 N7 ? ? B DG 9 C DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? B DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? B DG 9 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog22 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? B DG 9 D DG 21 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog23 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DG 4 N1 ? ? B DG 9 D DG 22 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog24 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DG 4 O6 ? ? B DG 10 C DG 16 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog25 hydrog ? ? B DG 4 N7 ? ? ? 1_555 D DG 4 N2 ? ? B DG 10 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 4 O6 ? ? ? 1_555 D DG 4 N1 ? ? B DG 10 D DG 22 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 4 O6 ? ? ? 1_555 D DG 5 N1 ? ? B DG 10 D DG 23 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog28 hydrog ? ? B DG 5 N1 ? ? ? 1_555 C DG 5 O6 ? ? B DG 11 C DG 17 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? hydrog29 hydrog ? ? B DG 5 N2 ? ? ? 1_555 C DT 6 O2 ? ? B DG 11 C DT 18 1_555 ? ? ? ? ? ? 'DG-DT MISPAIR' ? ? ? hydrog30 hydrog ? ? B DG 5 O6 ? ? ? 1_555 D DG 5 N2 ? ? B DG 11 D DG 23 1_555 ? ? ? ? ? ? 'DG-DG MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software C KVY 25 ? 4 'BINDING SITE FOR RESIDUE KVY C 25' AC2 Software D KVY 26 ? 6 'BINDING SITE FOR RESIDUE KVY D 26' AC3 Software A KVY 27 ? 10 'BINDING SITE FOR RESIDUE KVY A 27' AC4 Software B KVY 28 ? 7 'BINDING SITE FOR RESIDUE KVY B 28' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 KVY E . ? KVY A 27 . ? 1_555 ? 2 AC1 4 KVY F . ? KVY B 28 . ? 1_555 ? 3 AC1 4 DG C 5 ? DG C 17 . ? 1_555 ? 4 AC1 4 DT C 6 ? DT C 18 . ? 1_555 ? 5 AC2 6 DT A 6 ? DT A 6 . ? 1_555 ? 6 AC2 6 KVY E . ? KVY A 27 . ? 1_555 ? 7 AC2 6 KVY F . ? KVY B 28 . ? 1_555 ? 8 AC2 6 DG D 4 ? DG D 22 . ? 1_555 ? 9 AC2 6 DG D 5 ? DG D 23 . ? 1_555 ? 10 AC2 6 DT D 6 ? DT D 24 . ? 1_555 ? 11 AC3 10 DG A 4 ? DG A 4 . ? 1_555 ? 12 AC3 10 DG A 5 ? DG A 5 . ? 1_555 ? 13 AC3 10 DT A 6 ? DT A 6 . ? 1_555 ? 14 AC3 10 DT B 6 ? DT B 12 . ? 1_555 ? 15 AC3 10 KVY F . ? KVY B 28 . ? 1_555 ? 16 AC3 10 DG C 4 ? DG C 16 . ? 1_555 ? 17 AC3 10 DG C 5 ? DG C 17 . ? 1_555 ? 18 AC3 10 DT C 6 ? DT C 18 . ? 1_555 ? 19 AC3 10 KVY G . ? KVY C 25 . ? 1_555 ? 20 AC3 10 KVY H . ? KVY D 26 . ? 1_555 ? 21 AC4 7 KVY E . ? KVY A 27 . ? 1_555 ? 22 AC4 7 DG B 4 ? DG B 10 . ? 1_555 ? 23 AC4 7 DG B 5 ? DG B 11 . ? 1_555 ? 24 AC4 7 DT B 6 ? DT B 12 . ? 1_555 ? 25 AC4 7 KVY G . ? KVY C 25 . ? 1_555 ? 26 AC4 7 DT D 6 ? DT D 24 . ? 1_555 ? 27 AC4 7 KVY H . ? KVY D 26 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "HO5'" A DT 1 ? ? OP2 A DG 2 ? ? 1.58 2 5 "HO5'" A DT 1 ? ? OP2 A DG 2 ? ? 1.56 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.03 108.30 2.73 0.30 N 2 1 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.11 122.90 -3.79 0.60 N 3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.51 108.30 3.21 0.30 N 4 1 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 117.64 108.30 9.34 0.30 N 5 1 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.46 108.30 5.16 0.30 N 6 1 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.97 122.30 -4.33 0.60 N 7 1 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 112.72 108.30 4.42 0.30 N 8 1 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 118.62 122.30 -3.68 0.60 N 9 1 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.56 108.30 3.26 0.30 N 10 1 "O4'" B DG 10 ? ? "C1'" B DG 10 ? ? N9 B DG 10 ? ? 110.91 108.30 2.61 0.30 N 11 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.47 108.30 4.17 0.30 N 12 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 115.15 108.30 6.85 0.30 N 13 1 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 116.20 122.30 -6.10 0.60 N 14 1 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 112.01 108.30 3.71 0.30 N 15 1 "O4'" C DG 15 ? ? "C1'" C DG 15 ? ? N9 C DG 15 ? ? 110.38 108.30 2.08 0.30 N 16 1 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 111.08 108.30 2.78 0.30 N 17 1 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 111.68 108.30 3.38 0.30 N 18 1 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 113.92 108.30 5.62 0.30 N 19 1 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 116.51 122.30 -5.79 0.60 N 20 1 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 111.17 108.30 2.87 0.30 N 21 1 "O4'" D DG 21 ? ? "C1'" D DG 21 ? ? N9 D DG 21 ? ? 110.37 108.30 2.07 0.30 N 22 1 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 112.90 108.30 4.60 0.30 N 23 1 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 111.74 108.30 3.44 0.30 N 24 2 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.19 122.90 -3.71 0.60 N 25 2 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.33 108.30 4.03 0.30 N 26 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 100.13 105.90 -5.77 0.80 N 27 2 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 119.26 108.30 10.96 0.30 N 28 2 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 113.79 108.30 5.49 0.30 N 29 2 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.91 122.30 -4.39 0.60 N 30 2 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 118.44 122.30 -3.86 0.60 N 31 2 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.28 122.90 -3.62 0.60 N 32 2 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.73 108.30 3.43 0.30 N 33 2 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 112.41 108.30 4.11 0.30 N 34 2 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.94 108.30 3.64 0.30 N 35 2 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 116.06 108.30 7.76 0.30 N 36 2 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 116.60 122.30 -5.70 0.60 N 37 2 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 112.31 108.30 4.01 0.30 N 38 2 "O4'" C DG 15 ? ? "C1'" C DG 15 ? ? N9 C DG 15 ? ? 113.21 108.30 4.91 0.30 N 39 2 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.61 108.30 2.31 0.30 N 40 2 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 111.57 108.30 3.27 0.30 N 41 2 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 110.62 108.30 2.32 0.30 N 42 2 C6 C DT 18 ? ? C5 C DT 18 ? ? C7 C DT 18 ? ? 119.22 122.90 -3.68 0.60 N 43 2 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 112.44 108.30 4.14 0.30 N 44 2 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 118.10 122.30 -4.20 0.60 N 45 2 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 112.38 108.30 4.08 0.30 N 46 2 "O4'" D DG 23 ? ? "C4'" D DG 23 ? ? "C3'" D DG 23 ? ? 109.77 106.00 3.77 0.60 N 47 2 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 111.81 108.30 3.51 0.30 N 48 2 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.39 108.30 4.09 0.30 N 49 3 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 113.69 108.30 5.39 0.30 N 50 3 N3 A DT 1 ? ? C2 A DT 1 ? ? O2 A DT 1 ? ? 118.63 122.30 -3.67 0.60 N 51 3 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.37 108.30 7.07 0.30 N 52 3 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 112.89 108.30 4.59 0.30 N 53 3 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.00 122.30 -4.30 0.60 N 54 3 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.30 122.90 -3.60 0.60 N 55 3 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.39 108.30 2.09 0.30 N 56 3 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.86 108.30 2.56 0.30 N 57 3 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.58 108.30 2.28 0.30 N 58 3 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 118.51 122.30 -3.79 0.60 N 59 3 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 112.90 108.30 4.60 0.30 N 60 3 "O4'" C DG 15 ? ? "C1'" C DG 15 ? ? N9 C DG 15 ? ? 110.79 108.30 2.49 0.30 N 61 3 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 110.37 108.30 2.07 0.30 N 62 3 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 113.42 108.30 5.12 0.30 N 63 3 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 111.53 108.30 3.23 0.30 N 64 3 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 118.26 122.30 -4.04 0.60 N 65 3 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 110.23 108.30 1.93 0.30 N 66 3 "O4'" D DG 21 ? ? "C1'" D DG 21 ? ? N9 D DG 21 ? ? 110.22 108.30 1.92 0.30 N 67 3 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 113.69 108.30 5.39 0.30 N 68 3 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.22 108.30 3.92 0.30 N 69 4 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 111.62 108.30 3.32 0.30 N 70 4 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.18 122.90 -3.72 0.60 N 71 4 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.34 108.30 2.04 0.30 N 72 4 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.45 108.30 2.15 0.30 N 73 4 "C3'" A DG 5 ? ? "C2'" A DG 5 ? ? "C1'" A DG 5 ? ? 97.06 102.40 -5.34 0.80 N 74 4 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 114.75 108.30 6.45 0.30 N 75 4 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 114.58 108.30 6.28 0.30 N 76 4 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.79 122.30 -4.51 0.60 N 77 4 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.21 122.90 -3.69 0.60 N 78 4 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.63 108.30 3.33 0.30 N 79 4 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.78 108.30 4.48 0.30 N 80 4 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 118.65 122.30 -3.65 0.60 N 81 4 "O4'" C DG 15 ? ? "C1'" C DG 15 ? ? N9 C DG 15 ? ? 110.13 108.30 1.83 0.30 N 82 4 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 110.12 108.30 1.82 0.30 N 83 4 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 111.01 108.30 2.71 0.30 N 84 4 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 117.33 122.30 -4.97 0.60 N 85 4 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.29 122.90 -3.61 0.60 N 86 4 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 111.08 108.30 2.78 0.30 N 87 4 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 110.50 108.30 2.20 0.30 N 88 4 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.95 108.30 4.65 0.30 N 89 4 C6 D DT 24 ? ? C5 D DT 24 ? ? C7 D DT 24 ? ? 119.26 122.90 -3.64 0.60 N 90 5 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 112.45 108.30 4.15 0.30 N 91 5 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 119.01 122.90 -3.89 0.60 N 92 5 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 110.18 108.30 1.88 0.30 N 93 5 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 116.61 108.30 8.31 0.30 N 94 5 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 112.79 108.30 4.49 0.30 N 95 5 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.44 122.30 -4.86 0.60 N 96 5 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 118.65 122.30 -3.65 0.60 N 97 5 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.72 108.30 2.42 0.30 N 98 5 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 111.08 108.30 2.78 0.30 N 99 5 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 111.55 108.30 3.25 0.30 N 100 5 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.79 108.30 2.49 0.30 N 101 5 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 110.11 108.30 1.81 0.30 N 102 5 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 110.72 108.30 2.42 0.30 N 103 5 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.13 122.90 -3.77 0.60 N 104 5 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 113.11 108.30 4.81 0.30 N 105 5 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.85 108.30 4.55 0.30 N 106 6 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.15 108.30 1.85 0.30 N 107 6 C6 A DT 1 ? ? C5 A DT 1 ? ? C7 A DT 1 ? ? 118.97 122.90 -3.93 0.60 N 108 6 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.75 108.30 2.45 0.30 N 109 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.02 108.30 2.72 0.30 N 110 6 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 116.65 108.30 8.35 0.30 N 111 6 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.64 108.30 3.34 0.30 N 112 6 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.89 122.30 -4.41 0.60 N 113 6 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.28 122.90 -3.62 0.60 N 114 6 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.21 122.90 -3.69 0.60 N 115 6 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 110.59 108.30 2.29 0.30 N 116 6 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.65 108.30 4.35 0.30 N 117 6 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 115.51 108.30 7.21 0.30 N 118 6 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 117.30 122.30 -5.00 0.60 N 119 6 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 111.67 108.30 3.37 0.30 N 120 6 "O4'" C DG 14 ? ? "C4'" C DG 14 ? ? "C3'" C DG 14 ? ? 109.71 106.00 3.71 0.60 N 121 6 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 110.80 108.30 2.50 0.30 N 122 6 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 111.48 108.30 3.18 0.30 N 123 6 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 111.74 108.30 3.44 0.30 N 124 6 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 114.13 108.30 5.83 0.30 N 125 6 C6 C DT 18 ? ? C5 C DT 18 ? ? C7 C DT 18 ? ? 119.30 122.90 -3.60 0.60 N 126 6 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 115.42 108.30 7.12 0.30 N 127 6 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 115.66 122.30 -6.64 0.60 N 128 6 C6 D DT 19 ? ? C5 D DT 19 ? ? C7 D DT 19 ? ? 119.18 122.90 -3.72 0.60 N 129 6 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 110.85 108.30 2.55 0.30 N 130 6 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 112.96 108.30 4.66 0.30 N 131 6 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 113.02 108.30 4.72 0.30 N 132 7 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.22 108.30 1.92 0.30 N 133 7 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 112.64 108.30 4.34 0.30 N 134 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.14 108.30 1.84 0.30 N 135 7 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.28 108.30 6.98 0.30 N 136 7 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 112.82 108.30 4.52 0.30 N 137 7 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.12 122.30 -4.18 0.60 N 138 7 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.13 122.90 -3.77 0.60 N 139 7 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 118.03 122.30 -4.27 0.60 N 140 7 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.01 108.30 2.71 0.30 N 141 7 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 110.56 108.30 2.26 0.30 N 142 7 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 110.68 108.30 2.38 0.30 N 143 7 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.94 108.30 2.64 0.30 N 144 7 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 118.29 122.30 -4.01 0.60 N 145 7 N3 C DT 13 ? ? C2 C DT 13 ? ? O2 C DT 13 ? ? 118.57 122.30 -3.73 0.60 N 146 7 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 119.21 122.90 -3.69 0.60 N 147 7 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.75 108.30 2.45 0.30 N 148 7 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 110.70 108.30 2.40 0.30 N 149 7 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 111.50 108.30 3.20 0.30 N 150 7 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 113.49 108.30 5.19 0.30 N 151 7 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 116.89 122.30 -5.41 0.60 N 152 7 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 112.14 108.30 3.84 0.30 N 153 7 "O4'" D DG 23 ? ? "C4'" D DG 23 ? ? "C3'" D DG 23 ? ? 109.91 106.00 3.91 0.60 N 154 7 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 111.11 108.30 2.81 0.30 N 155 7 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.24 108.30 3.94 0.30 N 156 8 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 115.21 108.30 6.91 0.30 N 157 8 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.13 108.30 1.83 0.30 N 158 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.22 108.30 1.92 0.30 N 159 8 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.18 108.30 6.88 0.30 N 160 8 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.36 108.30 2.06 0.30 N 161 8 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.00 122.30 -4.30 0.60 N 162 8 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 112.32 108.30 4.02 0.30 N 163 8 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 117.23 122.30 -5.07 0.60 N 164 8 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.28 122.90 -3.62 0.60 N 165 8 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.61 108.30 3.31 0.30 N 166 8 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 113.82 108.30 5.52 0.30 N 167 8 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 113.27 108.30 4.97 0.30 N 168 8 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 118.38 122.30 -3.92 0.60 N 169 8 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 111.05 108.30 2.75 0.30 N 170 8 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.37 108.30 2.07 0.30 N 171 8 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 110.19 108.30 1.89 0.30 N 172 8 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 113.17 108.30 4.87 0.30 N 173 8 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 114.05 108.30 5.75 0.30 N 174 8 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 116.79 122.30 -5.51 0.60 N 175 8 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 112.69 108.30 4.39 0.30 N 176 8 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.90 108.30 4.60 0.30 N 177 9 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 110.97 108.30 2.67 0.30 N 178 9 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 115.83 108.30 7.53 0.30 N 179 9 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 111.02 108.30 2.72 0.30 N 180 9 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 117.73 122.30 -4.57 0.60 N 181 9 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.23 122.90 -3.67 0.60 N 182 9 N3 B DT 7 ? ? C2 B DT 7 ? ? O2 B DT 7 ? ? 118.61 122.30 -3.69 0.60 N 183 9 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.12 108.30 2.82 0.30 N 184 9 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 111.46 108.30 3.16 0.30 N 185 9 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.72 108.30 4.42 0.30 N 186 9 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? "C2'" B DT 12 ? ? 100.26 105.90 -5.64 0.80 N 187 9 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.29 108.30 3.99 0.30 N 188 9 N3 B DT 12 ? ? C2 B DT 12 ? ? O2 B DT 12 ? ? 117.22 122.30 -5.08 0.60 N 189 9 "O4'" C DT 13 ? ? "C1'" C DT 13 ? ? N1 C DT 13 ? ? 112.32 108.30 4.02 0.30 N 190 9 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 118.39 122.90 -4.51 0.60 N 191 9 "O4'" C DG 16 ? ? "C1'" C DG 16 ? ? N9 C DG 16 ? ? 110.23 108.30 1.93 0.30 N 192 9 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 110.75 108.30 2.45 0.30 N 193 9 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 111.41 108.30 3.11 0.30 N 194 9 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 114.95 108.30 6.65 0.30 N 195 9 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 117.20 122.30 -5.10 0.60 N 196 9 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 113.47 108.30 5.17 0.30 N 197 9 "O4'" D DG 22 ? ? "C1'" D DG 22 ? ? N9 D DG 22 ? ? 110.29 108.30 1.99 0.30 N 198 9 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 111.39 108.30 3.09 0.30 N 199 9 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 112.04 108.30 3.74 0.30 N 200 9 C6 D DT 24 ? ? C5 D DT 24 ? ? C7 D DT 24 ? ? 119.17 122.90 -3.73 0.60 N 201 10 "O4'" A DT 1 ? ? "C1'" A DT 1 ? ? N1 A DT 1 ? ? 114.77 108.30 6.47 0.30 N 202 10 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 111.39 108.30 3.09 0.30 N 203 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? "C2'" A DG 5 ? ? 101.08 105.90 -4.82 0.80 N 204 10 "O4'" A DG 5 ? ? "C1'" A DG 5 ? ? N9 A DG 5 ? ? 116.15 108.30 7.85 0.30 N 205 10 "O4'" A DT 6 ? ? "C1'" A DT 6 ? ? N1 A DT 6 ? ? 110.72 108.30 2.42 0.30 N 206 10 N3 A DT 6 ? ? C2 A DT 6 ? ? O2 A DT 6 ? ? 118.15 122.30 -4.15 0.60 N 207 10 C6 A DT 6 ? ? C5 A DT 6 ? ? C7 A DT 6 ? ? 119.09 122.90 -3.81 0.60 N 208 10 "O4'" B DT 7 ? ? "C1'" B DT 7 ? ? N1 B DT 7 ? ? 113.24 108.30 4.94 0.30 N 209 10 "O4'" B DG 8 ? ? "C1'" B DG 8 ? ? N9 B DG 8 ? ? 111.87 108.30 3.57 0.30 N 210 10 "O4'" B DG 9 ? ? "C1'" B DG 9 ? ? N9 B DG 9 ? ? 113.16 108.30 4.86 0.30 N 211 10 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 112.04 108.30 3.74 0.30 N 212 10 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 110.13 108.30 1.83 0.30 N 213 10 C6 C DT 13 ? ? C5 C DT 13 ? ? C7 C DT 13 ? ? 118.48 122.90 -4.42 0.60 N 214 10 "O4'" C DG 14 ? ? "C1'" C DG 14 ? ? N9 C DG 14 ? ? 110.96 108.30 2.66 0.30 N 215 10 "O4'" C DG 15 ? ? "C4'" C DG 15 ? ? "C3'" C DG 15 ? ? 109.64 106.00 3.64 0.60 N 216 10 "O4'" C DG 15 ? ? "C1'" C DG 15 ? ? N9 C DG 15 ? ? 110.17 108.30 1.87 0.30 N 217 10 "O4'" C DG 17 ? ? "C1'" C DG 17 ? ? N9 C DG 17 ? ? 110.96 108.30 2.66 0.30 N 218 10 N1 C DG 17 ? ? C6 C DG 17 ? ? O6 C DG 17 ? ? 116.28 119.90 -3.62 0.60 N 219 10 "O4'" C DT 18 ? ? "C1'" C DT 18 ? ? N1 C DT 18 ? ? 111.40 108.30 3.10 0.30 N 220 10 "O4'" D DT 19 ? ? "C1'" D DT 19 ? ? N1 D DT 19 ? ? 111.96 108.30 3.66 0.30 N 221 10 N3 D DT 19 ? ? C2 D DT 19 ? ? O2 D DT 19 ? ? 117.23 122.30 -5.07 0.60 N 222 10 "O4'" D DG 20 ? ? "C1'" D DG 20 ? ? N9 D DG 20 ? ? 112.99 108.30 4.69 0.30 N 223 10 "O4'" D DG 23 ? ? "C1'" D DG 23 ? ? N9 D DG 23 ? ? 110.53 108.30 2.23 0.30 N 224 10 "O4'" D DT 24 ? ? "C1'" D DT 24 ? ? N1 D DT 24 ? ? 113.79 108.30 5.49 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 3 ? ? 0.066 'SIDE CHAIN' 2 1 DG A 5 ? ? 0.080 'SIDE CHAIN' 3 1 DT A 6 ? ? 0.128 'SIDE CHAIN' 4 1 DT B 7 ? ? 0.130 'SIDE CHAIN' 5 1 DG B 8 ? ? 0.050 'SIDE CHAIN' 6 1 DG B 10 ? ? 0.053 'SIDE CHAIN' 7 1 DG B 11 ? ? 0.059 'SIDE CHAIN' 8 1 DG D 22 ? ? 0.065 'SIDE CHAIN' 9 1 DG D 23 ? ? 0.079 'SIDE CHAIN' 10 2 DG A 2 ? ? 0.074 'SIDE CHAIN' 11 2 DG A 3 ? ? 0.080 'SIDE CHAIN' 12 2 DT B 7 ? ? 0.184 'SIDE CHAIN' 13 2 DT B 12 ? ? 0.125 'SIDE CHAIN' 14 2 DT C 13 ? ? 0.072 'SIDE CHAIN' 15 2 DG C 14 ? ? 0.062 'SIDE CHAIN' 16 2 DG C 15 ? ? 0.056 'SIDE CHAIN' 17 2 DT D 19 ? ? 0.130 'SIDE CHAIN' 18 2 DG D 23 ? ? 0.071 'SIDE CHAIN' 19 2 DT D 24 ? ? 0.079 'SIDE CHAIN' 20 3 DG A 3 ? ? 0.073 'SIDE CHAIN' 21 3 DT A 6 ? ? 0.093 'SIDE CHAIN' 22 3 DT B 7 ? ? 0.088 'SIDE CHAIN' 23 3 DG C 14 ? ? 0.065 'SIDE CHAIN' 24 3 DG D 23 ? ? 0.090 'SIDE CHAIN' 25 3 DT D 24 ? ? 0.067 'SIDE CHAIN' 26 4 DG A 3 ? ? 0.076 'SIDE CHAIN' 27 4 DG A 5 ? ? 0.060 'SIDE CHAIN' 28 4 DT B 7 ? ? 0.077 'SIDE CHAIN' 29 4 DG B 10 ? ? 0.062 'SIDE CHAIN' 30 4 DG B 11 ? ? 0.056 'SIDE CHAIN' 31 4 DT B 12 ? ? 0.077 'SIDE CHAIN' 32 4 DG C 17 ? ? 0.116 'SIDE CHAIN' 33 4 DG D 21 ? ? 0.058 'SIDE CHAIN' 34 5 DG A 2 ? ? 0.055 'SIDE CHAIN' 35 5 DG A 5 ? ? 0.093 'SIDE CHAIN' 36 5 DG B 11 ? ? 0.064 'SIDE CHAIN' 37 5 DT B 12 ? ? 0.065 'SIDE CHAIN' 38 5 DG C 16 ? ? 0.066 'SIDE CHAIN' 39 5 DT C 18 ? ? 0.104 'SIDE CHAIN' 40 5 DG D 20 ? ? 0.052 'SIDE CHAIN' 41 5 DG D 21 ? ? 0.078 'SIDE CHAIN' 42 5 DG D 23 ? ? 0.063 'SIDE CHAIN' 43 6 DT A 1 ? ? 0.075 'SIDE CHAIN' 44 6 DG A 3 ? ? 0.064 'SIDE CHAIN' 45 6 DG A 5 ? ? 0.071 'SIDE CHAIN' 46 6 DT A 6 ? ? 0.100 'SIDE CHAIN' 47 6 DG B 9 ? ? 0.066 'SIDE CHAIN' 48 6 DG B 11 ? ? 0.091 'SIDE CHAIN' 49 6 DT C 13 ? ? 0.070 'SIDE CHAIN' 50 6 DG C 17 ? ? 0.126 'SIDE CHAIN' 51 6 DT C 18 ? ? 0.104 'SIDE CHAIN' 52 6 DG D 20 ? ? 0.062 'SIDE CHAIN' 53 6 DG D 23 ? ? 0.107 'SIDE CHAIN' 54 6 DT D 24 ? ? 0.084 'SIDE CHAIN' 55 7 DT A 1 ? ? 0.099 'SIDE CHAIN' 56 7 DG A 5 ? ? 0.081 'SIDE CHAIN' 57 7 DT A 6 ? ? 0.079 'SIDE CHAIN' 58 7 DG B 8 ? ? 0.051 'SIDE CHAIN' 59 7 DG D 22 ? ? 0.067 'SIDE CHAIN' 60 7 DG D 23 ? ? 0.068 'SIDE CHAIN' 61 8 DT A 1 ? ? 0.079 'SIDE CHAIN' 62 8 DG A 3 ? ? 0.084 'SIDE CHAIN' 63 8 DG A 4 ? ? 0.054 'SIDE CHAIN' 64 8 DG A 5 ? ? 0.061 'SIDE CHAIN' 65 8 DT B 7 ? ? 0.104 'SIDE CHAIN' 66 8 DT B 12 ? ? 0.110 'SIDE CHAIN' 67 8 DG D 23 ? ? 0.123 'SIDE CHAIN' 68 8 DT D 24 ? ? 0.086 'SIDE CHAIN' 69 9 DG A 3 ? ? 0.057 'SIDE CHAIN' 70 9 DG A 5 ? ? 0.065 'SIDE CHAIN' 71 9 DT B 7 ? ? 0.079 'SIDE CHAIN' 72 9 DG B 11 ? ? 0.054 'SIDE CHAIN' 73 9 DT B 12 ? ? 0.128 'SIDE CHAIN' 74 9 DT C 18 ? ? 0.086 'SIDE CHAIN' 75 9 DG D 20 ? ? 0.073 'SIDE CHAIN' 76 9 DG D 22 ? ? 0.059 'SIDE CHAIN' 77 9 DG D 23 ? ? 0.059 'SIDE CHAIN' 78 9 DT D 24 ? ? 0.066 'SIDE CHAIN' 79 10 DG A 5 ? ? 0.070 'SIDE CHAIN' 80 10 DG B 9 ? ? 0.062 'SIDE CHAIN' 81 10 DT B 12 ? ? 0.079 'SIDE CHAIN' 82 10 DT C 13 ? ? 0.059 'SIDE CHAIN' 83 10 DG C 17 ? ? 0.089 'SIDE CHAIN' 84 10 DT D 19 ? ? 0.136 'SIDE CHAIN' 85 10 DG D 20 ? ? 0.086 'SIDE CHAIN' 86 10 DT D 24 ? ? 0.065 'SIDE CHAIN' # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KVY _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KVY _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;8 mM KVY-1, 2 mM DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3')-2, 100 % D2O-3, 10 mM potassium phosphate-4, 70 mM potassium chloride-5, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;8 mM KVY-6, 2 mM DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3')-7, 10 % D2O-8, 10 mM potassium phosphate-9, 70 mM potassium chloride-10, 90 % H2O-11, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id KVY-1 8 ? mM ? 1 ;DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3')-2 ; 2 ? mM ? 1 D2O-3 100 ? % ? 1 'potassium phosphate-4' 10 ? mM ? 1 'potassium chloride-5' 70 ? mM ? 1 KVY-6 8 ? mM ? 2 ;DNA (5'-D(*DTP*DGP*DGP*DGP*DGP*DT)-3')-7 ; 2 ? mM ? 2 D2O-8 10 ? % ? 2 'potassium phosphate-9' 10 ? mM ? 2 'potassium chloride-10' 70 ? mM ? 2 H2O-11 90 ? % ? 2 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 80 7 ambient ? 298 K 2 80 7 ambient ? 298 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 2 1 1 '2D 1H-1H TOCSY' 2 2 1 '2D 1H-1H COSY' 1 3 2 '2D 1H-1H NOESY' 2 4 1 '2D 1H-1H NOESY' 2 5 1 '2D 1H-31P COSY' # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2KVY _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count 16 _pdbx_nmr_constraints.NA_other-angle_constraints_total_count 0 _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count 0 _pdbx_nmr_constraints.NOE_constraints_total ? _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # _pdbx_nmr_refine.entry_id 2KVY _pdbx_nmr_refine.method 'simulated annealing, molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber 10.0 1 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'geometry optimization' Amber 10.0 2 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' 'peak picking' Felix ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DG OP3 O N N 1 DG P P N N 2 DG OP1 O N N 3 DG OP2 O N N 4 DG "O5'" O N N 5 DG "C5'" C N N 6 DG "C4'" C N R 7 DG "O4'" O N N 8 DG "C3'" C N S 9 DG "O3'" O N N 10 DG "C2'" C N N 11 DG "C1'" C N R 12 DG N9 N Y N 13 DG C8 C Y N 14 DG N7 N Y N 15 DG C5 C Y N 16 DG C6 C N N 17 DG O6 O N N 18 DG N1 N N N 19 DG C2 C N N 20 DG N2 N N N 21 DG N3 N N N 22 DG C4 C Y N 23 DG HOP3 H N N 24 DG HOP2 H N N 25 DG "H5'" H N N 26 DG "H5''" H N N 27 DG "H4'" H N N 28 DG "H3'" H N N 29 DG "HO3'" H N N 30 DG "H2'" H N N 31 DG "H2''" H N N 32 DG "H1'" H N N 33 DG H8 H N N 34 DG H1 H N N 35 DG H21 H N N 36 DG H22 H N N 37 DT OP3 O N N 38 DT P P N N 39 DT OP1 O N N 40 DT OP2 O N N 41 DT "O5'" O N N 42 DT "C5'" C N N 43 DT "C4'" C N R 44 DT "O4'" O N N 45 DT "C3'" C N S 46 DT "O3'" O N N 47 DT "C2'" C N N 48 DT "C1'" C N R 49 DT N1 N N N 50 DT C2 C N N 51 DT O2 O N N 52 DT N3 N N N 53 DT C4 C N N 54 DT O4 O N N 55 DT C5 C N N 56 DT C7 C N N 57 DT C6 C N N 58 DT HOP3 H N N 59 DT HOP2 H N N 60 DT "H5'" H N N 61 DT "H5''" H N N 62 DT "H4'" H N N 63 DT "H3'" H N N 64 DT "HO3'" H N N 65 DT "H2'" H N N 66 DT "H2''" H N N 67 DT "H1'" H N N 68 DT H3 H N N 69 DT H71 H N N 70 DT H72 H N N 71 DT H73 H N N 72 DT H6 H N N 73 KVY N N N N 74 KVY C1 C Y N 75 KVY N1 N Y N 76 KVY O1 O N N 77 KVY C2 C Y N 78 KVY N2 N N N 79 KVY O2 O N N 80 KVY C3 C Y N 81 KVY N3 N Y N 82 KVY O3 O N N 83 KVY C4 C Y N 84 KVY N4 N N N 85 KVY O4 O N N 86 KVY C5 C N N 87 KVY N5 N Y N 88 KVY C6 C N N 89 KVY N6 N N N 90 KVY C7 C Y N 91 KVY N7 N N N 92 KVY C8 C Y N 93 KVY C9 C Y N 94 KVY C10 C Y N 95 KVY C11 C N N 96 KVY C12 C N N 97 KVY C13 C Y N 98 KVY C14 C Y N 99 KVY C15 C Y N 100 KVY C16 C Y N 101 KVY C17 C N N 102 KVY C18 C N N 103 KVY C19 C N N 104 KVY C20 C N N 105 KVY C21 C N N 106 KVY C22 C N N 107 KVY HN H N N 108 KVY HNA H N N 109 KVY HN7 H N N 110 KVY HN2 H N N 111 KVY HN4 H N N 112 KVY HN6 H N N 113 KVY H2 H N N 114 KVY H4 H N N 115 KVY H8 H N N 116 KVY H10 H N N 117 KVY H11 H N N 118 KVY H11A H N N 119 KVY H11B H N N 120 KVY H14 H N N 121 KVY H16 H N N 122 KVY H17 H N N 123 KVY H17A H N N 124 KVY H17B H N N 125 KVY H19 H N N 126 KVY H19A H N N 127 KVY H20 H N N 128 KVY H20A H N N 129 KVY H22 H N N 130 KVY H22A H N N 131 KVY H22B H N N 132 KVY H5 H N N 133 KVY H5A H N N 134 KVY H5B H N N 135 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DG OP3 P sing N N 1 DG OP3 HOP3 sing N N 2 DG P OP1 doub N N 3 DG P OP2 sing N N 4 DG P "O5'" sing N N 5 DG OP2 HOP2 sing N N 6 DG "O5'" "C5'" sing N N 7 DG "C5'" "C4'" sing N N 8 DG "C5'" "H5'" sing N N 9 DG "C5'" "H5''" sing N N 10 DG "C4'" "O4'" sing N N 11 DG "C4'" "C3'" sing N N 12 DG "C4'" "H4'" sing N N 13 DG "O4'" "C1'" sing N N 14 DG "C3'" "O3'" sing N N 15 DG "C3'" "C2'" sing N N 16 DG "C3'" "H3'" sing N N 17 DG "O3'" "HO3'" sing N N 18 DG "C2'" "C1'" sing N N 19 DG "C2'" "H2'" sing N N 20 DG "C2'" "H2''" sing N N 21 DG "C1'" N9 sing N N 22 DG "C1'" "H1'" sing N N 23 DG N9 C8 sing Y N 24 DG N9 C4 sing Y N 25 DG C8 N7 doub Y N 26 DG C8 H8 sing N N 27 DG N7 C5 sing Y N 28 DG C5 C6 sing N N 29 DG C5 C4 doub Y N 30 DG C6 O6 doub N N 31 DG C6 N1 sing N N 32 DG N1 C2 sing N N 33 DG N1 H1 sing N N 34 DG C2 N2 sing N N 35 DG C2 N3 doub N N 36 DG N2 H21 sing N N 37 DG N2 H22 sing N N 38 DG N3 C4 sing N N 39 DT OP3 P sing N N 40 DT OP3 HOP3 sing N N 41 DT P OP1 doub N N 42 DT P OP2 sing N N 43 DT P "O5'" sing N N 44 DT OP2 HOP2 sing N N 45 DT "O5'" "C5'" sing N N 46 DT "C5'" "C4'" sing N N 47 DT "C5'" "H5'" sing N N 48 DT "C5'" "H5''" sing N N 49 DT "C4'" "O4'" sing N N 50 DT "C4'" "C3'" sing N N 51 DT "C4'" "H4'" sing N N 52 DT "O4'" "C1'" sing N N 53 DT "C3'" "O3'" sing N N 54 DT "C3'" "C2'" sing N N 55 DT "C3'" "H3'" sing N N 56 DT "O3'" "HO3'" sing N N 57 DT "C2'" "C1'" sing N N 58 DT "C2'" "H2'" sing N N 59 DT "C2'" "H2''" sing N N 60 DT "C1'" N1 sing N N 61 DT "C1'" "H1'" sing N N 62 DT N1 C2 sing N N 63 DT N1 C6 sing N N 64 DT C2 O2 doub N N 65 DT C2 N3 sing N N 66 DT N3 C4 sing N N 67 DT N3 H3 sing N N 68 DT C4 O4 doub N N 69 DT C4 C5 sing N N 70 DT C5 C7 sing N N 71 DT C5 C6 doub N N 72 DT C7 H71 sing N N 73 DT C7 H72 sing N N 74 DT C7 H73 sing N N 75 DT C6 H6 sing N N 76 KVY HNA N sing N N 77 KVY HN N sing N N 78 KVY N C1 sing N N 79 KVY C1 C2 sing Y N 80 KVY C1 C4 doub Y N 81 KVY C4 N1 sing Y N 82 KVY C3 N1 sing Y N 83 KVY N1 C5 sing N N 84 KVY C6 O1 doub N N 85 KVY H2 C2 sing N N 86 KVY C2 C3 doub Y N 87 KVY HN2 N2 sing N N 88 KVY N2 C7 sing N N 89 KVY N2 C6 sing N N 90 KVY C12 O2 doub N N 91 KVY C3 C6 sing N N 92 KVY C9 N3 sing Y N 93 KVY N3 C10 sing Y N 94 KVY N3 C11 sing N N 95 KVY O3 C18 doub N N 96 KVY C4 H4 sing N N 97 KVY C13 N4 sing N N 98 KVY HN4 N4 sing N N 99 KVY N4 C12 sing N N 100 KVY O4 C21 doub N N 101 KVY H5B C5 sing N N 102 KVY H5 C5 sing N N 103 KVY C5 H5A sing N N 104 KVY C15 N5 sing Y N 105 KVY C17 N5 sing N N 106 KVY N5 C16 sing Y N 107 KVY C19 N6 sing N N 108 KVY N6 HN6 sing N N 109 KVY N6 C18 sing N N 110 KVY C8 C7 sing Y N 111 KVY C7 C10 doub Y N 112 KVY C22 N7 sing N N 113 KVY C21 N7 sing N N 114 KVY N7 HN7 sing N N 115 KVY H8 C8 sing N N 116 KVY C8 C9 doub Y N 117 KVY C12 C9 sing N N 118 KVY C10 H10 sing N N 119 KVY H11B C11 sing N N 120 KVY C11 H11 sing N N 121 KVY C11 H11A sing N N 122 KVY C14 C13 sing Y N 123 KVY C13 C16 doub Y N 124 KVY C15 C14 doub Y N 125 KVY H14 C14 sing N N 126 KVY C18 C15 sing N N 127 KVY C16 H16 sing N N 128 KVY H17A C17 sing N N 129 KVY C17 H17B sing N N 130 KVY C17 H17 sing N N 131 KVY H19 C19 sing N N 132 KVY H19A C19 sing N N 133 KVY C19 C20 sing N N 134 KVY C21 C20 sing N N 135 KVY H20 C20 sing N N 136 KVY C20 H20A sing N N 137 KVY H22 C22 sing N N 138 KVY C22 H22B sing N N 139 KVY C22 H22A sing N N 140 # _ndb_struct_conf_na.entry_id 2KVY _ndb_struct_conf_na.feature 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DG 2 1_555 D DG 2 1_555 -2.924 -2.391 -0.046 -14.901 4.046 86.178 1 B_DG8:DG20_D B 8 ? D 20 ? 6 3 1 C DG 2 1_555 A DG 2 1_555 2.935 2.333 0.283 3.112 -0.828 -85.992 2 C_DG14:DG2_A C 14 ? A 2 ? 6 3 1 D DG 3 1_555 A DG 3 1_555 -2.913 -2.278 -0.978 12.978 10.542 89.026 3 D_DG21:DG3_A D 21 ? A 3 ? 6 3 1 B DG 3 1_555 C DG 3 1_555 2.720 2.482 -0.191 -8.797 8.907 -85.761 4 B_DG9:DG15_C B 9 ? C 15 ? 6 3 1 B DG 4 1_555 D DG 4 1_555 -2.421 -2.670 1.150 -23.255 3.550 92.586 5 B_DG10:DG22_D B 10 ? D 22 ? 6 3 1 C DG 4 1_555 A DG 4 1_555 2.974 2.262 -0.506 -16.607 -1.274 -81.188 6 C_DG16:DG4_A C 16 ? A 4 ? 6 3 1 C DG 5 1_555 B DG 5 1_555 -3.060 -1.935 0.521 -24.533 19.026 97.086 7 C_DG17:DG11_B C 17 ? B 11 ? ? 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DG 2 1_555 D DG 2 1_555 C DG 2 1_555 A DG 2 1_555 2.627 2.394 0.630 2.731 3.290 -178.645 -1.197 1.314 0.629 -1.645 1.366 -178.646 1 BC_DG8DG14:DG2DG20_AD B 8 ? D 20 ? C 14 ? A 2 ? 1 C DG 2 1_555 A DG 2 1_555 D DG 3 1_555 A DG 3 1_555 -3.057 -1.306 3.142 -2.631 -4.972 115.603 -0.720 1.778 3.221 -2.937 1.554 115.690 2 CD_DG14DG21:DG3DG2_AA C 14 ? A 2 ? D 21 ? A 3 ? 1 D DG 3 1_555 A DG 3 1_555 B DG 3 1_555 C DG 3 1_555 -2.788 -2.307 0.322 1.789 -4.762 177.543 -1.154 1.394 0.323 -2.382 -0.895 177.545 3 DB_DG21DG9:DG15DG3_CA D 21 ? A 3 ? B 9 ? C 15 ? 1 B DG 3 1_555 C DG 3 1_555 B DG 4 1_555 D DG 4 1_555 1.567 1.626 2.522 10.777 -3.292 -70.491 -1.311 1.622 2.357 2.834 9.278 -71.271 4 BB_DG9DG10:DG22DG15_DC B 9 ? C 15 ? B 10 ? D 22 ? 1 B DG 4 1_555 D DG 4 1_555 C DG 4 1_555 A DG 4 1_555 2.671 2.209 0.998 -9.678 -13.657 -173.437 -1.103 1.335 1.026 6.839 -4.847 -173.507 5 BC_DG10DG16:DG4DG22_AD B 10 ? D 22 ? C 16 ? A 4 ? 1 C DG 4 1_555 A DG 4 1_555 C DG 5 1_555 B DG 5 1_555 2.403 2.482 2.429 6.024 5.037 -65.308 -2.428 2.383 2.050 -4.650 5.561 -65.726 6 CC_DG16DG17:DG11DG4_BA C 16 ? A 4 ? C 17 ? B 11 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 700 Varian INOVA 1 'VARIAN INOVA' 500 Varian INOVA 2 'Varian INOVA' # _atom_sites.entry_id 2KVY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_