HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAR-10 2KVZ TITLE STRUCTURE OF RESIDUES 161-235 OF PUTATIVE PEPTIDOGLYCAN BINDING TITLE 2 PROTEIN LMO0835 FROM LISTERIA MONOCYTOGENES: TARGET LMR64B OF THE TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 161-235; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: ISPE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.R.CORT,T.A.RAMELOT,D.LEE,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 3 22-MAY-24 2KVZ 1 REMARK REVDAT 2 16-MAR-22 2KVZ 1 REMARK SEQADV REVDAT 1 28-APR-10 2KVZ 0 JRNL AUTH J.R.CORT,T.A.RAMELOT,D.LEE,C.CICCOSANTI,H.JANJUA,T.B.ACTON, JRNL AUTH 2 R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL STRUCTURE OF RESIDUES 161-235 OF PUTATIVE PEPTIDOGLYCAN JRNL TITL 2 BINDING PROTEIN LMO0835 FROM LISTERIA MONOCYTOGENES: TARGET JRNL TITL 3 LMR64B OF THE NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CNS REMARK 3 AUTHORS : GODDARD (SPARKY), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KVZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101641. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.92 MM [U-99% 13C; U-99% 15N] REMARK 210 LMO0835, 100 MM NACL, 20 MM REMARK 210 SODIUM ACETATE, 5 MM CALCIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O; 0.92 REMARK 210 MM [5% 13C BIOSYNTHETICALLY REMARK 210 DIRECTED LABELING, U-99% 15N] REMARK 210 LMO0835, 100 MM NACL, 20 MM REMARK 210 SODIUM ACETATE, 5 MM CALCIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O; 0.92 REMARK 210 MM [U-99% 13C; U-99% 15N] REMARK 210 LMO0835, 100 MM NACL, 20 MM REMARK 210 SODIUM ACETATE, 5 MM CALCIUM REMARK 210 CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D C(CO)NH; 4D HCCH REMARK 210 HMQC-NOESY-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR NIH, AUTOSTRUCTURE REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW ENERGY, FEW VIOLATIONS, REMARK 210 FAVORAVLE BACKBONE TORSIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 15 -74.41 -82.88 REMARK 500 1 GLU A 16 -44.27 -165.19 REMARK 500 1 LYS A 49 151.22 173.26 REMARK 500 1 ILE A 54 -38.96 -135.22 REMARK 500 1 GLU A 75 45.00 -81.15 REMARK 500 1 HIS A 84 32.41 -78.61 REMARK 500 2 LYS A 43 104.73 -53.88 REMARK 500 2 LYS A 49 164.88 179.59 REMARK 500 2 PRO A 62 109.04 -51.70 REMARK 500 2 PRO A 74 170.07 -56.69 REMARK 500 2 HIS A 84 -23.11 173.01 REMARK 500 3 ASP A 2 89.84 59.68 REMARK 500 3 PHE A 3 -61.11 -159.38 REMARK 500 3 GLU A 16 -34.64 76.54 REMARK 500 3 ASN A 17 20.39 -72.18 REMARK 500 3 ASN A 18 -3.73 70.27 REMARK 500 3 LYS A 49 143.10 166.63 REMARK 500 4 ASP A 2 79.34 61.98 REMARK 500 4 PRO A 6 99.51 -65.51 REMARK 500 4 LEU A 30 -165.13 -75.25 REMARK 500 4 LYS A 40 128.19 64.56 REMARK 500 4 LYS A 43 102.15 -49.71 REMARK 500 4 LYS A 49 133.99 176.76 REMARK 500 5 ASN A 18 96.39 59.15 REMARK 500 5 ASN A 32 73.83 -102.99 REMARK 500 5 LYS A 40 167.71 64.83 REMARK 500 5 LYS A 43 91.18 -66.37 REMARK 500 5 LYS A 49 156.04 172.57 REMARK 500 5 GLU A 60 41.61 -85.50 REMARK 500 5 PRO A 62 108.17 -49.61 REMARK 500 5 ALA A 73 77.46 57.53 REMARK 500 5 HIS A 80 121.63 74.35 REMARK 500 6 ASN A 18 80.54 60.53 REMARK 500 6 SER A 20 98.41 -66.25 REMARK 500 6 ASN A 32 74.18 60.70 REMARK 500 6 LEU A 48 -71.86 70.68 REMARK 500 6 LYS A 49 127.81 -175.59 REMARK 500 6 SER A 52 -172.45 64.16 REMARK 500 7 PRO A 23 109.00 -58.12 REMARK 500 7 GLU A 75 79.04 49.50 REMARK 500 8 ASN A 18 86.82 68.34 REMARK 500 8 LYS A 43 101.31 -56.05 REMARK 500 8 LYS A 49 162.36 164.82 REMARK 500 8 ALA A 73 -51.52 -141.25 REMARK 500 8 HIS A 81 75.64 78.85 REMARK 500 9 GLU A 16 -30.73 155.28 REMARK 500 9 LYS A 40 143.22 70.32 REMARK 500 9 LYS A 43 95.51 -61.08 REMARK 500 9 LYS A 49 138.19 176.61 REMARK 500 9 PHE A 58 98.53 -69.40 REMARK 500 REMARK 500 THIS ENTRY HAS 121 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KT7 RELATED DB: PDB REMARK 900 ANOTHER DOMAIN FROM SAME POLYPEPTIDE AND WITH A SIMILAR FOLD REMARK 900 RELATED ID: LMR64B RELATED DB: TARGETDB DBREF 2KVZ A 3 77 UNP A3RI37 A3RI37_LISMO 161 235 SEQADV 2KVZ MET A 1 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ ASP A 2 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ LEU A 78 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ GLU A 79 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ HIS A 80 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ HIS A 81 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ HIS A 82 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ HIS A 83 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ HIS A 84 UNP A3RI37 EXPRESSION TAG SEQADV 2KVZ HIS A 85 UNP A3RI37 EXPRESSION TAG SEQRES 1 A 85 MET ASP PHE GLY LYS PRO ASN GLN VAL THR VAL ASN TYR SEQRES 2 A 85 LEU ASP GLU ASN ASN THR SER ILE ALA PRO SER LEU TYR SEQRES 3 A 85 LEU SER GLY LEU PHE ASN GLU ALA TYR ASN VAL PRO MET SEQRES 4 A 85 LYS LYS ILE LYS GLY TYR THR LEU LEU LYS TYR ASP SER SEQRES 5 A 85 GLU ILE LEU GLY VAL PHE THR GLU SER PRO GLN THR ILE SEQRES 6 A 85 ASN ILE ILE TYR GLN LYS LYS ALA PRO GLU GLN ALA LEU SEQRES 7 A 85 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 LYS A 41 LYS A 43 5 3 SHEET 1 A 4 SER A 20 LEU A 27 0 SHEET 2 A 4 VAL A 9 LEU A 14 -1 N VAL A 11 O LEU A 25 SHEET 3 A 4 GLN A 63 LYS A 71 1 O GLN A 63 N THR A 10 SHEET 4 A 4 TYR A 45 TYR A 50 -1 N THR A 46 O GLN A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1