HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-10 2KW4 TITLE SOLUTION NMR STRUCTURE OF THE HOLO FORM OF A RIBONUCLEASE H DOMAIN TITLE 2 FROM D.HAFNIENSE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 DHR1A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RIBONUCLEASE H DOMAIN RESIDUES 69-206; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 138119; SOURCE 4 STRAIN: Y51; SOURCE 5 GENE: DSY1790; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 TARGET DHR1A, PSI-2, PROTEIN STRUCTURE INITIATIVE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.L.MILLS,A.ELETSKY,J.HUA,R.L.BELOTE,W.A.BUCHWALD,C.CICCOSANTI, AUTHOR 2 H.JANJUA,R.NAIR,B.ROST,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 2 16-MAR-22 2KW4 1 REMARK SEQADV REVDAT 1 05-MAY-10 2KW4 0 JRNL AUTH J.L.MILLS,A.ELETSKY,J.HUA,R.L.BELOTE,W.A.BUCHWALD, JRNL AUTH 2 C.CICCOSANTI,H.JANJUA,R.NAIR,B.ROST,T.B.ACTON,R.XIAO, JRNL AUTH 3 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET DHR1A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, MOLMOL REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), KORADI, REMARK 3 BILLETER AND WUTHRICH (MOLMOL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KW4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101646. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.89 MM [U-100% 13C; U-100% 15N] REMARK 210 DHR1A, 150 MM MAGNESIUM CHLORIDE, REMARK 210 20 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 50 UM DSS, 0.02 % REMARK 210 SODIUM AZIDE, 90 % H2O, 10 % D2O, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D SIMUTANEOUS 13C- REMARK 210 AROMATIC,13C-ALIPHATIC,15N REMARK 210 EDITED 1H-1H NOESY; 3D HBHA(CO) REMARK 210 NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, TOPSPIN, VNMRJ, REMARK 210 CARA, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 4 24.26 -159.12 REMARK 500 1 GLU A 6 26.27 -157.03 REMARK 500 1 TYR A 10 78.39 -68.39 REMARK 500 1 ASP A 12 108.19 64.50 REMARK 500 1 SER A 14 141.69 -175.60 REMARK 500 1 ASN A 17 -70.80 70.43 REMARK 500 1 GLU A 35 103.00 -179.36 REMARK 500 1 ASP A 36 145.88 -178.92 REMARK 500 1 LYS A 41 -33.26 179.40 REMARK 500 1 MET A 48 33.70 -96.35 REMARK 500 1 LEU A 75 93.47 -63.40 REMARK 500 1 TYR A 78 -76.41 68.57 REMARK 500 1 ALA A 79 -168.99 55.70 REMARK 500 1 GLU A 94 169.20 63.84 REMARK 500 1 LYS A 116 -81.19 -67.72 REMARK 500 1 ALA A 117 -174.38 -178.52 REMARK 500 1 HIS A 118 158.48 64.63 REMARK 500 1 SER A 119 -176.37 -179.50 REMARK 500 1 ASN A 121 -167.54 179.91 REMARK 500 1 ASP A 139 -177.98 -179.75 REMARK 500 1 LEU A 140 89.57 -167.80 REMARK 500 2 GLU A 6 20.64 -142.99 REMARK 500 2 ASP A 12 63.61 64.84 REMARK 500 2 SER A 14 145.15 -172.02 REMARK 500 2 ASN A 17 -69.75 70.26 REMARK 500 2 GLU A 35 105.61 -177.81 REMARK 500 2 LYS A 41 33.86 -178.98 REMARK 500 2 ARG A 49 -86.57 62.06 REMARK 500 2 LYS A 71 -174.62 66.50 REMARK 500 2 LEU A 75 -75.60 68.48 REMARK 500 2 ASP A 77 65.60 -173.39 REMARK 500 2 TYR A 78 -75.53 -51.11 REMARK 500 2 ALA A 79 -167.89 50.22 REMARK 500 2 ASN A 93 104.05 -49.99 REMARK 500 2 GLU A 94 -173.46 53.47 REMARK 500 2 LYS A 116 -76.95 -135.43 REMARK 500 2 ALA A 117 133.50 -177.64 REMARK 500 2 ASN A 121 -168.73 -179.31 REMARK 500 2 ASP A 139 -176.41 -179.68 REMARK 500 2 HIS A 144 -178.98 -174.65 REMARK 500 3 ARG A 4 27.83 -158.74 REMARK 500 3 THR A 5 -76.70 -63.26 REMARK 500 3 ASP A 12 157.62 64.16 REMARK 500 3 SER A 14 -169.89 -60.67 REMARK 500 3 TYR A 15 -70.37 -147.35 REMARK 500 3 ASN A 17 -156.83 45.73 REMARK 500 3 GLU A 35 -168.19 -174.72 REMARK 500 3 ASP A 36 153.84 65.26 REMARK 500 3 ALA A 37 -169.50 -120.33 REMARK 500 3 LYS A 41 48.06 -140.81 REMARK 500 REMARK 500 THIS ENTRY HAS 497 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 148 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KQ2 RELATED DB: PDB REMARK 900 APO FORM REMARK 900 RELATED ID: 16578 RELATED DB: BMRB REMARK 900 APO FORM REMARK 900 RELATED ID: DHR1A RELATED DB: TARGETDB DBREF 2KW4 A 2 139 UNP Q24WL3 Q24WL3_DESHY 69 206 SEQADV 2KW4 MET A 1 UNP Q24WL3 INITIATING METHIONINE SEQADV 2KW4 LEU A 140 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 GLU A 141 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 HIS A 142 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 HIS A 143 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 HIS A 144 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 HIS A 145 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 HIS A 146 UNP Q24WL3 EXPRESSION TAG SEQADV 2KW4 HIS A 147 UNP Q24WL3 EXPRESSION TAG SEQRES 1 A 147 MET ASP ASP ARG THR GLU TYR ASP VAL TYR THR ASP GLY SEQRES 2 A 147 SER TYR VAL ASN GLY GLN TYR ALA TRP ALA TYR ALA PHE SEQRES 3 A 147 VAL LYS ASP GLY LYS VAL HIS TYR GLU ASP ALA ASP VAL SEQRES 4 A 147 GLY LYS ASN PRO ALA ALA ALA THR MET ARG ASN VAL ALA SEQRES 5 A 147 GLY GLU ILE ALA ALA ALA LEU TYR ALA VAL LYS LYS ALA SEQRES 6 A 147 SER GLN LEU GLY VAL LYS ILE ARG ILE LEU HIS ASP TYR SEQRES 7 A 147 ALA GLY ILE ALA PHE TRP ALA THR GLY GLU TRP LYS ALA SEQRES 8 A 147 LYS ASN GLU PHE THR GLN ALA TYR ALA LYS LEU MET ASN SEQRES 9 A 147 GLN TYR ARG GLY ILE TYR SER PHE GLU LYS VAL LYS ALA SEQRES 10 A 147 HIS SER GLY ASN GLU PHE ASN ASP TYR VAL ASP MET LYS SEQRES 11 A 147 ALA LYS SER ALA LEU GLY ILE ARG ASP LEU GLU HIS HIS SEQRES 12 A 147 HIS HIS HIS HIS HET MG A 148 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG MG 2+ HELIX 1 1 ASN A 42 THR A 47 1 6 HELIX 2 2 ASN A 50 SER A 66 1 17 HELIX 3 3 GLY A 80 ALA A 85 1 6 HELIX 4 4 THR A 96 TYR A 106 1 11 HELIX 5 5 ASP A 125 GLY A 136 1 12 SHEET 1 A 2 ALA A 21 TRP A 22 0 SHEET 2 A 2 ASP A 38 VAL A 39 -1 O ASP A 38 N TRP A 22 SHEET 1 B 2 VAL A 27 LYS A 28 0 SHEET 2 B 2 LYS A 31 VAL A 32 -1 O LYS A 31 N LYS A 28 SITE 1 AC1 5 ASP A 8 THR A 11 ASP A 12 ASP A 77 SITE 2 AC1 5 ALA A 79 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1