HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 31-MAR-10 2KW7 TITLE SOLUTION NMR STRUCTURE OF THE N-TERMINAL DOMAIN OF PROTEIN PG_0361 TITLE 2 FROM P.GINGIVALIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 PGR37A COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED DOMAIN PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 35-182; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PORPHYROMONAS GINGIVALIS; SOURCE 3 ORGANISM_TAXID: 837; SOURCE 4 STRAIN: W83; SOURCE 5 GENE: PG_0361; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ELETSKY,J.L.MILLS,D.LEE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KW7 1 REMARK REVDAT 2 05-FEB-20 2KW7 1 REMARK SEQADV REVDAT 1 28-APR-10 2KW7 0 JRNL AUTH A.ELETSKY,J.L.MILLS,D.LEE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON, JRNL AUTH 2 R.XIAO,J.K.EVERETT,G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF THE N-TERMINAL DOMAIN OF PROTEIN JRNL TITL 2 PG_0361 FROM P.GINGIVALIS, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET TARGET PGR37A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY WITH CYANA V2.1 USING NOE-BASED CONSTRAINTS AND PHI REMARK 3 AND PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS+. THE 20 REMARK 3 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION WERE REMARK 3 FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER BATH REMARK 3 USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD AND UPPER LIMIT REMARK 3 CONSTRAINTS RELAXED BY 5% REMARK 4 REMARK 4 2KW7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101649. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 PGR37A-1, 20 MM MES-2, 100 MM REMARK 210 SODIUM CHLORIDE-3, 5 MM CALCIUM REMARK 210 CHLORIDE-4, 0.02 % SODIUM AZIDE- REMARK 210 5, 50 UM DSS-6, 95% H2O/5% D2O; REMARK 210 0.8 MM [U-5% 13C; U-100% 15N] REMARK 210 PGR37A-7, 20 MM MES-8, 100 MM REMARK 210 SODIUM CHLORIDE-9, 5 MM CALCIUM REMARK 210 CHLORIDE-10, 0.02 % SODIUM AZIDE- REMARK 210 11, 50 UM DSS-12, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HNCO; 3D CBCA(CO) REMARK 210 NH; 3D HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 SIMUTANEOUS 13C-AROMATIC,13C- REMARK 210 ALIPHATIC,15N EDITED 1H-1H NOESY; REMARK 210 2D 1H-13C HSQC AROMATIC; 3D REMARK 210 HCCH-COSY ALIPHATIC; 3D HCCH- REMARK 210 COSY AROMATIC; 3D HCCH-TOCSY; 2D REMARK 210 LONG-RANGE 1H-15N HSQC FOR REMARK 210 HISTIDINE; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.2, CYANA 3.0, REMARK 210 AUTOSTRUCTURE 2.2.1, AUTOASSIGN REMARK 210 2.3, CARA 1.8.4, TOPSPIN 2.1, REMARK 210 VNMRJ 2.1B, PROSA 6.4, TALOS+ REMARK 210 1.2009.0721.18 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 11 78.48 -63.82 REMARK 500 1 ALA A 15 -56.00 -139.85 REMARK 500 1 LEU A 20 -16.20 70.03 REMARK 500 1 SER A 45 -66.48 -93.64 REMARK 500 1 ASN A 79 98.74 -67.55 REMARK 500 1 LYS A 81 76.69 60.38 REMARK 500 1 ASN A 83 -98.89 -56.35 REMARK 500 1 TYR A 103 -29.39 -147.62 REMARK 500 1 TYR A 108 -62.69 -133.87 REMARK 500 1 HIS A 153 106.37 -45.31 REMARK 500 1 HIS A 156 -82.13 -74.25 REMARK 500 2 GLU A 7 -35.47 -174.40 REMARK 500 2 ASN A 11 87.88 -66.89 REMARK 500 2 ALA A 15 -86.94 -94.18 REMARK 500 2 SER A 46 -72.19 -130.09 REMARK 500 2 ASN A 79 101.70 -53.83 REMARK 500 2 GLU A 80 40.49 38.03 REMARK 500 2 LYS A 81 83.43 65.48 REMARK 500 2 MET A 122 -62.80 -108.79 REMARK 500 2 SER A 149 -58.24 -155.00 REMARK 500 3 ASN A 11 79.16 -68.50 REMARK 500 3 ALA A 15 -63.92 -106.07 REMARK 500 3 ASP A 16 -71.84 -66.52 REMARK 500 3 SER A 17 -22.61 73.73 REMARK 500 3 SER A 46 -66.08 -102.80 REMARK 500 3 GLU A 80 -83.79 -135.71 REMARK 500 3 ASN A 83 -90.15 -62.62 REMARK 500 3 ASN A 84 32.87 -88.26 REMARK 500 3 SER A 149 -50.69 -130.59 REMARK 500 3 HIS A 154 -65.66 -152.54 REMARK 500 4 PRO A 10 109.07 -55.85 REMARK 500 4 ASN A 11 77.92 -69.19 REMARK 500 4 ASN A 79 82.74 -67.21 REMARK 500 4 LYS A 81 81.84 65.50 REMARK 500 4 ASN A 82 -76.47 -62.54 REMARK 500 4 ASN A 83 -136.57 -157.74 REMARK 500 4 ASN A 84 26.91 -72.64 REMARK 500 5 VAL A 3 107.80 52.61 REMARK 500 5 ASN A 11 79.90 -61.18 REMARK 500 5 ALA A 15 -70.73 -124.72 REMARK 500 5 ASP A 16 36.24 -77.83 REMARK 500 5 SER A 46 -68.68 -99.57 REMARK 500 5 GLU A 80 46.44 -151.92 REMARK 500 5 LYS A 81 76.13 62.91 REMARK 500 5 ARG A 95 52.25 36.21 REMARK 500 5 TYR A 108 -57.48 -141.55 REMARK 500 5 MET A 122 -54.77 -120.79 REMARK 500 6 ARG A 2 11.23 -169.12 REMARK 500 6 LEU A 14 -56.25 177.06 REMARK 500 6 ASP A 16 49.16 -96.57 REMARK 500 REMARK 500 THIS ENTRY HAS 194 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PGR37A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16810 RELATED DB: BMRB DBREF 2KW7 A 2 149 UNP Q7MX54 Q7MX54_PORGI 35 182 SEQADV 2KW7 MET A 1 UNP Q7MX54 INITIATING METHIONINE SEQADV 2KW7 LEU A 150 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 GLU A 151 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 HIS A 152 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 HIS A 153 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 HIS A 154 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 HIS A 155 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 HIS A 156 UNP Q7MX54 EXPRESSION TAG SEQADV 2KW7 HIS A 157 UNP Q7MX54 EXPRESSION TAG SEQRES 1 A 157 MET ARG VAL TYR LYS PRO GLU ASP VAL PRO ASN VAL GLN SEQRES 2 A 157 LEU ALA ASP SER THR ARG LEU VAL THR ASP GLU ALA GLY SEQRES 3 A 157 LEU LEU SER ASN ALA GLN GLU GLU VAL MET ASN GLY ARG SEQRES 4 A 157 LEU ARG ALA ILE ARG SER SER HIS ALA VAL GLU PHE ALA SEQRES 5 A 157 VAL VAL THR LEU PRO SER ILE GLY ASP ALA PRO LEU GLU SEQRES 6 A 157 ASP PHE THR LEU LYS LEU ALA ARG GLN TRP GLY VAL GLY SEQRES 7 A 157 ASN GLU LYS ASN ASN ASN GLY LEU LEU LEU VAL LEU VAL SEQRES 8 A 157 LEU ASP GLN ARG ARG VAL ARG PHE GLU THR GLY TYR GLY SEQRES 9 A 157 LEU GLU GLY TYR LEU PRO ASP GLY LEU LEU SER ARG ILE SEQRES 10 A 157 ILE HIS ASP ARG MET ILE PRO HIS PHE ARG SER GLY ASN SEQRES 11 A 157 TYR ALA GLU GLY LEU SER GLU GLY VAL LEU ALA VAL GLN SEQRES 12 A 157 GLN VAL LEU ASP GLY SER LEU GLU HIS HIS HIS HIS HIS SEQRES 13 A 157 HIS HELIX 1 1 LYS A 5 VAL A 9 5 5 HELIX 2 2 ASN A 11 ALA A 15 5 5 HELIX 3 3 SER A 29 SER A 46 1 18 HELIX 4 4 PRO A 63 GLY A 76 1 14 HELIX 5 5 PRO A 110 ARG A 121 1 12 HELIX 6 6 ARG A 121 GLY A 129 1 9 HELIX 7 7 ASN A 130 LEU A 150 1 21 SHEET 1 A 4 VAL A 21 ASP A 23 0 SHEET 2 A 4 GLU A 50 LEU A 56 1 O THR A 55 N THR A 22 SHEET 3 A 4 GLY A 85 VAL A 91 1 O LEU A 86 N GLU A 50 SHEET 4 A 4 ARG A 96 THR A 101 -1 O ARG A 96 N VAL A 91 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1