HEADER PROTEIN BINDING 31-MAR-10 2KW8 TITLE SOLUTION STRUCTURE OF BACILLUS ANTHRACIS SORTASE A (SRTA) TITLE 2 TRANSPEPTIDASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPXTG-SITE TRANSPEPTIDASE FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 80-233; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS ANTHRACIS; SOURCE 3 ORGANISM_COMMON: ANTHRAX,ANTHRAX BACTERIUM; SOURCE 4 ORGANISM_TAXID: 1392; SOURCE 5 GENE: BA_0688, GBAA0688, GBAA_0688; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B KEYWDS SORTASE, SRTA, TRANSPEPTIDASE, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR E.M.WEINER,S.A.ROBSON,M.MAROHN,R.T.CLUBB REVDAT 3 05-FEB-20 2KW8 1 REMARK SEQADV REVDAT 2 11-AUG-10 2KW8 1 JRNL REVDAT 1 26-MAY-10 2KW8 0 JRNL AUTH E.M.WEINER,S.ROBSON,M.MAROHN,R.T.CLUBB JRNL TITL THE SORTASE A ENZYME THAT ATTACHES PROTEINS TO THE CELL WALL JRNL TITL 2 OF BACILLUS ANTHRACIS CONTAINS AN UNUSUAL ACTIVE SITE JRNL TITL 3 ARCHITECTURE. JRNL REF J.BIOL.CHEM. V. 285 23433 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20489200 JRNL DOI 10.1074/JBC.M110.135434 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101650. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 4 MM [U-100% 15N] SRTA-1, 10 MM REMARK 210 MES-2, 20 MM BIS-TRIS-3, 93% H2O/ REMARK 210 7% D2O; 2.5 MM [U-100% 13C; U- REMARK 210 100% 15N] SRTA-4, 10 MM MES-5, REMARK 210 20 MM BIS-TRIS-6, 93% H2O/7% D2O; REMARK 210 2.5 MM [U-100% 13C; U-100% 15N] REMARK 210 SRTA-7, 10 MM MES-8, 20 MM BIS- REMARK 210 TRIS-9, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNHA; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNHB; 3D HCCH-COSY; 3D REMARK 210 HCACO; 4D 15N-13C HMQC-NOESY- REMARK 210 HSQC; 2D (HB)CB(CGCDCE)HE; 2D REMARK 210 (HB)CB(CGCD)HD; 2D 1H-15N HSQC REMARK 210 NOE WITH INTERLEAVED PRESAT AND REMARK 210 NO SAT REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, NMRPIPE, ATNOS/CANDID, REMARK 210 MODELFREE, PROCHECKNMR, TALOS, REMARK 210 XWINNMR, CARA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 82 HZ3 LYS A 209 1.33 REMARK 500 HD22 ASN A 120 OG1 THR A 183 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 54 -147.75 51.67 REMARK 500 1 MET A 56 -0.30 55.34 REMARK 500 1 LYS A 60 40.07 -68.24 REMARK 500 1 ASP A 62 123.04 61.24 REMARK 500 1 GLN A 63 93.00 -38.06 REMARK 500 1 ASN A 113 46.54 -91.17 REMARK 500 1 MET A 128 -14.25 -45.43 REMARK 500 1 ASP A 137 41.91 -149.96 REMARK 500 1 ASN A 152 -73.53 -21.17 REMARK 500 1 VAL A 190 -85.68 48.61 REMARK 500 2 SER A 59 -92.86 -84.22 REMARK 500 2 ASP A 62 -111.48 58.88 REMARK 500 2 SER A 97 -179.52 -69.34 REMARK 500 2 SER A 98 49.92 -159.15 REMARK 500 2 MET A 128 -26.20 -35.84 REMARK 500 2 ASP A 137 37.99 -147.60 REMARK 500 2 ASP A 151 -167.88 -110.00 REMARK 500 2 ASN A 152 -72.79 -29.66 REMARK 500 2 PRO A 168 -18.81 -47.32 REMARK 500 2 TRP A 171 -22.10 -157.78 REMARK 500 2 ASP A 176 108.36 27.18 REMARK 500 2 CYS A 187 -97.77 -78.52 REMARK 500 2 VAL A 188 -1.63 56.39 REMARK 500 2 SER A 189 -114.43 45.29 REMARK 500 2 LYS A 191 -131.20 -92.54 REMARK 500 2 ASN A 193 -125.70 -163.03 REMARK 500 2 LYS A 195 101.51 -165.66 REMARK 500 3 MET A 56 -121.33 -73.25 REMARK 500 3 SER A 59 3.12 57.06 REMARK 500 3 ILE A 61 -80.20 -142.54 REMARK 500 3 ASP A 62 -80.44 54.43 REMARK 500 3 LYS A 76 -16.13 -47.13 REMARK 500 3 ASN A 113 43.41 -145.87 REMARK 500 3 MET A 128 -15.49 -42.22 REMARK 500 3 ASP A 137 42.80 -149.82 REMARK 500 3 ALA A 139 1.58 -67.70 REMARK 500 3 ASP A 151 -164.88 -112.08 REMARK 500 3 ASN A 152 -78.07 -21.95 REMARK 500 3 PRO A 168 -12.04 -46.25 REMARK 500 3 GLU A 172 -14.81 -48.81 REMARK 500 3 CYS A 187 162.22 56.70 REMARK 500 3 LYS A 191 -165.35 -112.55 REMARK 500 4 SER A 59 31.93 -88.75 REMARK 500 4 ASP A 62 -98.62 55.60 REMARK 500 4 GLN A 63 78.25 -151.16 REMARK 500 4 SER A 89 47.82 71.76 REMARK 500 4 ASN A 113 45.58 -92.93 REMARK 500 4 MET A 128 -24.51 -38.49 REMARK 500 4 ASP A 137 39.74 -146.68 REMARK 500 4 ASP A 151 -167.04 -115.52 REMARK 500 REMARK 500 THIS ENTRY HAS 569 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 82 0.30 SIDE CHAIN REMARK 500 1 ARG A 196 0.21 SIDE CHAIN REMARK 500 2 ARG A 82 0.31 SIDE CHAIN REMARK 500 2 ARG A 196 0.21 SIDE CHAIN REMARK 500 3 ARG A 82 0.30 SIDE CHAIN REMARK 500 3 ARG A 196 0.20 SIDE CHAIN REMARK 500 4 ARG A 82 0.30 SIDE CHAIN REMARK 500 4 ARG A 196 0.21 SIDE CHAIN REMARK 500 5 ARG A 82 0.31 SIDE CHAIN REMARK 500 5 ARG A 196 0.21 SIDE CHAIN REMARK 500 6 ARG A 82 0.30 SIDE CHAIN REMARK 500 6 ARG A 196 0.19 SIDE CHAIN REMARK 500 7 ARG A 82 0.31 SIDE CHAIN REMARK 500 7 ARG A 196 0.20 SIDE CHAIN REMARK 500 8 ARG A 82 0.30 SIDE CHAIN REMARK 500 8 ARG A 196 0.23 SIDE CHAIN REMARK 500 9 ARG A 82 0.30 SIDE CHAIN REMARK 500 9 ARG A 196 0.21 SIDE CHAIN REMARK 500 10 ARG A 82 0.31 SIDE CHAIN REMARK 500 10 ARG A 196 0.19 SIDE CHAIN REMARK 500 11 ARG A 82 0.30 SIDE CHAIN REMARK 500 11 ARG A 196 0.21 SIDE CHAIN REMARK 500 12 ARG A 82 0.31 SIDE CHAIN REMARK 500 12 ARG A 196 0.20 SIDE CHAIN REMARK 500 13 ARG A 82 0.31 SIDE CHAIN REMARK 500 13 ARG A 196 0.21 SIDE CHAIN REMARK 500 14 ARG A 82 0.30 SIDE CHAIN REMARK 500 14 ARG A 196 0.21 SIDE CHAIN REMARK 500 15 ARG A 82 0.30 SIDE CHAIN REMARK 500 15 ARG A 196 0.20 SIDE CHAIN REMARK 500 16 ARG A 82 0.31 SIDE CHAIN REMARK 500 16 ARG A 196 0.23 SIDE CHAIN REMARK 500 17 ARG A 82 0.30 SIDE CHAIN REMARK 500 17 ARG A 196 0.22 SIDE CHAIN REMARK 500 18 ARG A 82 0.30 SIDE CHAIN REMARK 500 18 ARG A 196 0.19 SIDE CHAIN REMARK 500 19 ARG A 82 0.30 SIDE CHAIN REMARK 500 19 ARG A 196 0.21 SIDE CHAIN REMARK 500 20 ARG A 82 0.31 SIDE CHAIN REMARK 500 20 ARG A 196 0.21 SIDE CHAIN REMARK 500 21 ARG A 82 0.31 SIDE CHAIN REMARK 500 21 ARG A 196 0.21 SIDE CHAIN REMARK 500 22 ARG A 82 0.30 SIDE CHAIN REMARK 500 22 ARG A 196 0.20 SIDE CHAIN REMARK 500 23 ARG A 82 0.30 SIDE CHAIN REMARK 500 23 ARG A 196 0.20 SIDE CHAIN REMARK 500 24 ARG A 82 0.30 SIDE CHAIN REMARK 500 24 ARG A 196 0.20 SIDE CHAIN REMARK 500 25 ARG A 82 0.30 SIDE CHAIN REMARK 500 25 ARG A 196 0.22 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 80 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16811 RELATED DB: BMRB DBREF 2KW8 A 57 210 UNP Q81V16 Q81V16_BACAN 80 233 SEQADV 2KW8 GLY A 53 UNP Q81V16 EXPRESSION TAG SEQADV 2KW8 SER A 54 UNP Q81V16 EXPRESSION TAG SEQADV 2KW8 HIS A 55 UNP Q81V16 EXPRESSION TAG SEQADV 2KW8 MET A 56 UNP Q81V16 EXPRESSION TAG SEQRES 1 A 158 GLY SER HIS MET ASP ALA SER LYS ILE ASP GLN PRO ASP SEQRES 2 A 158 LEU ALA GLU VAL ALA ASN ALA SER LEU ASP LYS LYS GLN SEQRES 3 A 158 VAL ILE GLY ARG ILE SER ILE PRO SER VAL SER LEU GLU SEQRES 4 A 158 LEU PRO VAL LEU LYS SER SER THR GLU LYS ASN LEU LEU SEQRES 5 A 158 SER GLY ALA ALA THR VAL LYS GLU ASN GLN VAL MET GLY SEQRES 6 A 158 LYS GLY ASN TYR ALA LEU ALA GLY HIS ASN MET SER LYS SEQRES 7 A 158 LYS GLY VAL LEU PHE SER ASP ILE ALA SER LEU LYS LYS SEQRES 8 A 158 GLY ASP LYS ILE TYR LEU TYR ASP ASN GLU ASN GLU TYR SEQRES 9 A 158 GLU TYR ALA VAL THR GLY VAL SER GLU VAL THR PRO ASP SEQRES 10 A 158 LYS TRP GLU VAL VAL GLU ASP HIS GLY LYS ASP GLU ILE SEQRES 11 A 158 THR LEU ILE THR CYS VAL SER VAL LYS ASP ASN SER LYS SEQRES 12 A 158 ARG TYR VAL VAL ALA GLY ASP LEU VAL GLY THR LYS ALA SEQRES 13 A 158 LYS LYS HELIX 1 1 ASP A 65 ALA A 72 1 8 HELIX 2 2 ASP A 75 LYS A 77 5 3 HELIX 3 3 LYS A 101 SER A 105 5 5 HELIX 4 4 ASP A 137 LEU A 141 5 5 HELIX 5 5 LYS A 170 VAL A 174 5 5 SHEET 1 A 9 VAL A 79 ILE A 85 0 SHEET 2 A 9 LEU A 90 LEU A 95 -1 O VAL A 94 N GLY A 81 SHEET 3 A 9 ALA A 107 THR A 109 1 O THR A 109 N LEU A 95 SHEET 4 A 9 ASN A 120 GLY A 125 -1 O ALA A 124 N ALA A 108 SHEET 5 A 9 GLU A 181 THR A 186 1 O THR A 183 N LEU A 123 SHEET 6 A 9 ARG A 196 ALA A 208 -1 O GLY A 201 N ILE A 182 SHEET 7 A 9 ASN A 154 VAL A 166 -1 N ALA A 159 O ASP A 202 SHEET 8 A 9 LYS A 146 TYR A 150 -1 N LEU A 149 O TYR A 156 SHEET 9 A 9 VAL A 79 ILE A 85 -1 N ARG A 82 O TYR A 150 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1