HEADER TRANSPORT PROTEIN 12-APR-10 2KWH TITLE RAL BINDING DOMAIN OF RLIP76 (RALBP1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RALA-BINDING PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 393-446; COMPND 5 SYNONYM: RALBP1, RAL-INTERACTING PROTEIN 1, 76 KDA RAL-INTERACTING COMPND 6 PROTEIN, DINITROPHENYL S-GLUTATHIONE ATPASE, DNP-SG ATPASE; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RALBP1, RLIP1, RLIP76; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PGEX2T KEYWDS GTPASE ACTIVATION, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 50 AUTHOR R.B.FENWICK,L.J.CAMPBELL,K.RAJASEKAR,S.PRASANNAN,D.NIETLISPACH, AUTHOR 2 J.CAMONIS,D.OWEN,H.R.MOTT REVDAT 4 14-JUN-23 2KWH 1 REMARK REVDAT 3 06-OCT-21 2KWH 1 SEQADV REVDAT 2 05-FEB-20 2KWH 1 REMARK SEQADV REVDAT 1 01-SEP-10 2KWH 0 JRNL AUTH R.B.FENWICK,L.J.CAMPBELL,K.RAJASEKAR,S.PRASANNAN, JRNL AUTH 2 D.NIETLISPACH,J.CAMONIS,D.OWEN,H.R.MOTT JRNL TITL THE RALB-RLIP76 COMPLEX REVEALS A NOVEL MODE OF RAL-EFFECTOR JRNL TITL 2 INTERACTION JRNL REF STRUCTURE V. 18 985 2010 JRNL REFN ISSN 0969-2126 JRNL PMID 20696399 JRNL DOI 10.1016/J.STR.2010.05.013 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AZARA, CNS REMARK 3 AUTHORS : BOUCHER (AZARA), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-APR-10. REMARK 100 THE DEPOSITION ID IS D_1000101659. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.3 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM SODIUM PHOSPHATE-1, 100 MM REMARK 210 SODIUM CHLORIDE-2, 1 MM REMARK 210 MAGNESIUM CHLORIDE-3, 0.05 % REMARK 210 SODIUM AZIDE-4, 0.8 MM RLIP76-5, REMARK 210 90% H2O/10% D2O; 50 MM SODIUM REMARK 210 PHOSPHATE-6, 100 MM SODIUM REMARK 210 CHLORIDE-7, 1 MM MAGNESIUM REMARK 210 CHLORIDE-8, 0.05 % SODIUM AZIDE- REMARK 210 9, 0.8 MM [U-99% 15N] RLIP76-10, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ANALYSIS, ARIA, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 50 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 401 HH21 ARG A 404 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 ARG A 444 -55.23 -131.10 REMARK 500 8 LEU A 416 38.52 -91.79 REMARK 500 9 THR A 394 81.84 -153.21 REMARK 500 10 LYS A 421 65.21 -109.50 REMARK 500 11 LEU A 416 36.30 -87.62 REMARK 500 12 SER A 392 -166.51 59.95 REMARK 500 12 LEU A 416 30.36 -96.22 REMARK 500 12 LYS A 421 73.04 -103.24 REMARK 500 13 GLU A 393 -70.31 -73.23 REMARK 500 13 THR A 394 77.82 50.58 REMARK 500 13 LYS A 421 79.34 -114.48 REMARK 500 14 GLU A 393 51.16 -95.24 REMARK 500 15 SER A 392 -64.13 -138.99 REMARK 500 17 SER A 392 78.10 -117.78 REMARK 500 17 GLU A 393 102.76 -58.96 REMARK 500 18 SER A 392 -166.11 -100.65 REMARK 500 19 GLU A 445 35.04 -94.72 REMARK 500 20 GLU A 393 90.63 -67.10 REMARK 500 23 SER A 392 -64.51 -92.34 REMARK 500 23 GLU A 445 34.42 -84.50 REMARK 500 24 GLU A 393 -157.52 -123.07 REMARK 500 24 THR A 394 99.48 -66.12 REMARK 500 26 ASP A 415 4.08 -68.83 REMARK 500 27 SER A 392 -85.34 63.14 REMARK 500 27 THR A 394 124.84 71.83 REMARK 500 27 GLN A 417 -98.25 52.23 REMARK 500 28 SER A 392 -89.07 -101.19 REMARK 500 28 GLU A 393 -96.76 -124.38 REMARK 500 30 GLN A 417 -70.50 63.22 REMARK 500 32 SER A 392 -51.26 -137.71 REMARK 500 32 GLU A 393 -89.83 57.62 REMARK 500 34 ARG A 444 -51.49 -138.24 REMARK 500 35 SER A 392 -161.70 63.76 REMARK 500 35 GLU A 393 102.19 -53.11 REMARK 500 36 SER A 392 142.56 69.52 REMARK 500 37 LEU A 416 43.79 -90.62 REMARK 500 40 LEU A 423 -65.53 -136.74 REMARK 500 40 ARG A 444 -44.93 -132.06 REMARK 500 41 THR A 394 132.96 75.36 REMARK 500 41 LYS A 421 62.88 -115.20 REMARK 500 42 ARG A 444 -45.99 -138.53 REMARK 500 44 SER A 392 -71.87 -93.50 REMARK 500 44 GLU A 393 -92.49 -134.15 REMARK 500 44 GLN A 417 18.37 53.41 REMARK 500 45 GLU A 445 55.87 -112.64 REMARK 500 46 SER A 392 69.94 -168.73 REMARK 500 46 ARG A 444 -68.30 -104.97 REMARK 500 46 GLU A 445 49.02 -93.28 REMARK 500 47 GLN A 417 -159.53 54.44 REMARK 500 48 GLU A 393 -81.67 -81.45 REMARK 500 REMARK 500 THIS ENTRY HAS 53 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15524 RELATED DB: BMRB REMARK 900 RELATED ID: 2KWI RELATED DB: PDB DBREF 2KWH A 393 446 UNP Q15311 RBP1_HUMAN 393 446 SEQADV 2KWH GLY A 391 UNP Q15311 EXPRESSION TAG SEQADV 2KWH SER A 392 UNP Q15311 EXPRESSION TAG SEQADV 2KWH SER A 411 UNP Q15311 CYS 411 ENGINEERED MUTATION SEQRES 1 A 56 GLY SER GLU THR GLN ALA GLY ILE LYS GLU GLU ILE ARG SEQRES 2 A 56 ARG GLN GLU PHE LEU LEU ASN SER LEU HIS ARG ASP LEU SEQRES 3 A 56 GLN GLY GLY ILE LYS ASP LEU SER LYS GLU GLU ARG LEU SEQRES 4 A 56 TRP GLU VAL GLN ARG ILE LEU THR ALA LEU LYS ARG LYS SEQRES 5 A 56 LEU ARG GLU ALA HELIX 1 1 THR A 394 ASP A 415 1 22 HELIX 2 2 LEU A 423 GLU A 445 1 23 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1