HEADER TRANSFERASE 16-APR-10 2KWR OBSLTE 02-JUN-10 2KWR 2KXI TITLE SOLUTION NMR STRUCTURE OF THE APOFORM OF NARE (NMB1343) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NMB1343; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 VARIANT: SEROGROUP B; SOURCE 6 GENE: NMB1343; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21B+ KEYWDS ADP RIBOSYLTRANSFERASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KOEHLER,L.CARLIER,D.VEGGI,M.SORIANI,M.PIZZA,R.BOELENS, AUTHOR 2 A.M.J.J.BONVIN REVDAT 4 15-FEB-12 2KWR 1 OBSLTE REVDAT 3 02-MAR-11 2KWR 1 OBSLTE REVDAT 2 02-JUN-10 2KWR 1 OBSLTE REVDAT 1 05-MAY-10 2KWR 0 JRNL AUTH C.KOEHLER,L.CARLIER,D.VEGGI,M.SORIANI,M.PIZZA,R.BOELENS, JRNL AUTH 2 A.M.J.J.BONVIN JRNL TITL SOLUTION NMR STRUCTURE OF THE APOFORM OF NARE (NMB1343) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE-KUNSTLEVE, REMARK 3 JIANG,KUSZEWSKI,NILGES,PANNU,READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REFINEMENT IN WATER REMARK 4 REMARK 4 2KWR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 2KWR WAS WRONGLY RELEASE. IT SHOULD HAVE BEEN ON HOLD UNTIL REMARK 5 PUBLICATION. 2KWR WILL BE REPLACED BY 2KXI, WHEN THE CITATION IS REMARK 5 PUBLISHED AND 2KXI IS RELEASED. REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-APR-10. REMARK 100 THE RCSB ID CODE IS RCSB101669. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 15N] NMB1343-1, REMARK 210 75 MM SODIUM CHLORIDE-2, 25 MM REMARK 210 SODIUM PHOSPHATE-3, 0.01 % SODIUM REMARK 210 AZIDE-4, 0.5 MM TSP-5, 1 MM DTT- REMARK 210 6, 90% H2O/10% D2O; 0.6 MM [U- REMARK 210 100% 13C; U-100% 15N] NMB1343-7, REMARK 210 75 MM SODIUM CHLORIDE-8, 25 MM REMARK 210 SODIUM PHOSPHATE-9, 0.01 % SODIUM REMARK 210 AZIDE-10, 0.5 MM TSP-11, 1 MM DTT REMARK 210 -12, 90% H2O/10% D2O; 0.8 MM [U- REMARK 210 100% 13C; U-100% 15N] NMB1343-13, REMARK 210 75 MM SODIUM CHLORIDE-14, 25 MM REMARK 210 SODIUM PHOSPHATE-15, 0.01 % REMARK 210 SODIUM AZIDE-16, 0.5 MM TSP-17, 1 REMARK 210 MM DTT-18, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY; 2D 1H-1H TOCSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-15N HSQC T1 REMARK 210 EDITED; 2D 1H-15N HSQC T2 EDITED; REMARK 210 2D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; OXFORD INSTRUMENTS REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 10 79.68 -105.25 REMARK 500 1 CYS A 11 -80.93 -16.91 REMARK 500 1 LYS A 24 110.44 -167.10 REMARK 500 1 ASN A 26 -90.23 -177.34 REMARK 500 1 ALA A 28 -38.78 -154.03 REMARK 500 1 GLU A 29 -75.85 68.80 REMARK 500 1 VAL A 30 88.90 -157.58 REMARK 500 1 ILE A 32 86.69 66.62 REMARK 500 1 ALA A 44 -127.53 53.23 REMARK 500 1 SER A 49 46.31 -82.10 REMARK 500 1 LYS A 75 -79.20 -38.69 REMARK 500 1 ASN A 89 76.10 -119.81 REMARK 500 1 CYS A 130 72.32 55.62 REMARK 500 1 GLU A 134 0.14 -66.46 REMARK 500 1 ILE A 144 41.95 39.22 REMARK 500 1 LEU A 146 -74.20 -135.00 REMARK 500 2 ASN A 3 142.71 178.66 REMARK 500 2 CYS A 11 -81.79 -39.09 REMARK 500 2 GLN A 20 84.80 70.72 REMARK 500 2 LEU A 21 -106.49 69.08 REMARK 500 2 ASN A 26 73.75 60.22 REMARK 500 2 LYS A 27 35.35 -161.62 REMARK 500 2 ALA A 28 -55.74 -134.64 REMARK 500 2 VAL A 30 87.45 61.52 REMARK 500 2 ALA A 31 -38.31 -156.45 REMARK 500 2 PHE A 38 -96.10 55.51 REMARK 500 2 ALA A 44 -167.71 -174.36 REMARK 500 2 LYS A 75 -66.53 -29.49 REMARK 500 2 PRO A 113 162.32 -47.07 REMARK 500 2 CYS A 130 71.43 64.35 REMARK 500 2 ILE A 144 88.35 58.08 REMARK 500 2 LEU A 146 -33.27 -172.81 REMARK 500 2 GLU A 147 35.65 -77.93 REMARK 500 2 HIS A 149 74.44 178.93 REMARK 500 2 HIS A 150 79.88 -68.80 REMARK 500 2 HIS A 151 -19.21 -163.07 REMARK 500 3 ASN A 3 -54.25 175.01 REMARK 500 3 PHE A 4 161.32 179.54 REMARK 500 3 CYS A 11 -73.11 -19.33 REMARK 500 3 GLN A 20 148.82 76.58 REMARK 500 3 LYS A 22 125.47 -173.60 REMARK 500 3 LYS A 24 79.24 -162.70 REMARK 500 3 VAL A 30 135.18 68.91 REMARK 500 3 ASP A 35 171.07 64.00 REMARK 500 3 PRO A 48 -137.85 -79.77 REMARK 500 3 SER A 49 166.00 67.02 REMARK 500 3 VAL A 50 -78.30 67.68 REMARK 500 3 LEU A 63 -52.01 -120.51 REMARK 500 3 LYS A 75 -76.38 -60.40 REMARK 500 3 PRO A 113 166.00 -46.98 REMARK 500 REMARK 500 THIS ENTRY HAS 379 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16737 RELATED DB: BMRB DBREF 2KWR A 1 145 UNP Q9JZ10 Q9JZ10_NEIMB 1 145 SEQADV 2KWR LEU A 146 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR GLU A 147 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR HIS A 148 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR HIS A 149 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR HIS A 150 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR HIS A 151 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR HIS A 152 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KWR HIS A 153 UNP Q9JZ10 EXPRESSION TAG SEQRES 1 A 153 MET GLY ASN PHE LEU TYR ARG GLY ILE SER CYS GLN GLN SEQRES 2 A 153 ASP GLU GLN ASN ASN GLY GLN LEU LYS PRO LYS GLY ASN SEQRES 3 A 153 LYS ALA GLU VAL ALA ILE ARG TYR ASP GLY LYS PHE LYS SEQRES 4 A 153 TYR ASP GLY LYS ALA THR HIS GLY PRO SER VAL LYS ASN SEQRES 5 A 153 ALA VAL TYR ALA HIS GLN ILE GLU THR GLY LEU TYR ASP SEQRES 6 A 153 GLY CYS TYR ILE SER THR THR THR ASP LYS GLU ILE ALA SEQRES 7 A 153 LYS LYS PHE ALA THR SER SER GLY ILE GLU ASN GLY TYR SEQRES 8 A 153 ILE TYR VAL LEU ASN ARG ASP LEU PHE GLY GLN TYR SER SEQRES 9 A 153 ILE PHE GLU TYR GLU VAL GLU HIS PRO GLU ASN PRO ASN SEQRES 10 A 153 GLU LYS GLU VAL THR ILE ARG ALA GLU ASP CYS GLY CYS SEQRES 11 A 153 ILE PRO GLU GLU VAL ILE ILE ALA LYS GLU LEU ILE GLU SEQRES 12 A 153 ILE ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 10 GLY A 19 1 10 HELIX 2 2 SER A 49 GLY A 62 1 14 HELIX 3 3 GLU A 76 SER A 85 1 10 HELIX 4 4 ARG A 97 SER A 104 1 8 HELIX 5 5 PRO A 132 GLU A 134 5 3 SHEET 1 A 3 PHE A 4 ILE A 9 0 SHEET 2 A 3 ASN A 89 ASN A 96 -1 O LEU A 95 N LEU A 5 SHEET 3 A 3 ILE A 136 GLU A 143 -1 O ALA A 138 N VAL A 94 SHEET 1 B 3 ILE A 69 ASP A 74 0 SHEET 2 B 3 GLU A 118 ARG A 124 -1 O ILE A 123 N ILE A 69 SHEET 3 B 3 PHE A 106 GLU A 111 -1 N PHE A 106 O ARG A 124 SSBOND 1 CYS A 67 CYS A 128 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1