HEADER PROTEIN BINDING 27-APR-10 2KX7 TITLE SOLUTION STRUCTURE OF THE E.COLI RCSD-ABL DOMAIN (RESIDUES 688-795) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR-LIKE HISTIDINE KINASE YOJN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PHOSPHOTRANSFER INTERMEDIATE YOJN; COMPND 5 EC: 2.7.13.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2216, JW2204, YOJN, YOJP, YOJQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS ALPHA-BETA-LOOP (ABL) DOMAIN, PHOSPHOTRANSFER, RCS REGULATION, RCSD, KEYWDS 2 TWO-COMPONENT SYSTEM, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR V.V.ROGOV,K.SCHMOEE,N.Y.ROGOVA,F.LOEHR,F.BERNHARD,V.DOETSCH REVDAT 3 01-MAY-24 2KX7 1 REMARK SEQADV REVDAT 2 27-APR-11 2KX7 1 JRNL REVDAT 1 06-APR-11 2KX7 0 JRNL AUTH K.SCHMOE,V.V.ROGOV,N.Y.ROGOVA,F.LOHR,P.GUNTERT,F.BERNHARD, JRNL AUTH 2 V.DOTSCH JRNL TITL STRUCTURAL INSIGHTS INTO RCS PHOSPHOTRANSFER: THE NEWLY JRNL TITL 2 IDENTIFIED RCSD-ABL DOMAIN ENHANCES INTERACTION WITH THE JRNL TITL 3 RESPONSE REGULATOR RCSB. JRNL REF STRUCTURE V. 19 577 2011 JRNL REFN ISSN 0969-2126 JRNL PMID 21481780 JRNL DOI 10.1016/J.STR.2011.01.012 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1-2, CNS REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZATION IN PRESENCE OF H2O REMARK 3 MOLECULES IN CNS/ARIA REMARK 4 REMARK 4 2KX7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101685. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.125 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 33 MM TRIS, 125 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 95% H2O/5% REMARK 210 D2O; 33 MM TRIS, 125 MM SODIUM REMARK 210 CHLORIDE, 1 MM TCEP, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D HCCH-TOCSY; REMARK 210 3D 1H-15N TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 1-2 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 HIS A 798 REMARK 465 HIS A 799 REMARK 465 HIS A 800 REMARK 465 HIS A 801 REMARK 465 HIS A 802 REMARK 465 HIS A 803 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 692 -66.16 70.19 REMARK 500 1 ASP A 693 54.21 -154.07 REMARK 500 1 ASP A 724 -146.70 61.22 REMARK 500 1 GLU A 725 -42.89 -137.52 REMARK 500 1 ASN A 739 141.67 72.40 REMARK 500 1 ALA A 745 -69.05 -157.65 REMARK 500 1 GLN A 789 72.70 -110.59 REMARK 500 2 GLU A 688 -176.70 -172.55 REMARK 500 2 ASP A 692 71.45 55.37 REMARK 500 2 PRO A 723 37.99 -71.12 REMARK 500 2 ASP A 724 -172.17 59.76 REMARK 500 2 LEU A 727 -128.12 -105.60 REMARK 500 2 ILE A 728 -47.03 -156.37 REMARK 500 2 ASN A 739 137.14 77.66 REMARK 500 2 ALA A 745 -80.26 -158.35 REMARK 500 2 ASP A 753 -38.09 -175.49 REMARK 500 2 GLN A 789 -106.69 -132.64 REMARK 500 2 GLU A 790 109.83 -179.01 REMARK 500 2 THR A 793 60.73 64.40 REMARK 500 3 ASP A 692 -61.63 71.35 REMARK 500 3 ASP A 693 57.04 -156.50 REMARK 500 3 PRO A 723 99.36 -57.44 REMARK 500 3 ASP A 724 124.89 -37.72 REMARK 500 3 LEU A 727 -70.59 -83.09 REMARK 500 3 ILE A 728 -34.90 163.87 REMARK 500 3 ASN A 739 145.81 72.50 REMARK 500 3 ALA A 745 -62.87 -162.58 REMARK 500 3 GLN A 789 50.62 -97.59 REMARK 500 3 GLU A 791 83.62 69.67 REMARK 500 4 ASP A 692 -74.00 66.82 REMARK 500 4 PRO A 723 33.89 -75.77 REMARK 500 4 ASP A 724 -164.55 57.97 REMARK 500 4 GLU A 725 -30.95 -137.31 REMARK 500 4 ASN A 739 163.36 71.40 REMARK 500 4 ALA A 745 -64.51 -155.76 REMARK 500 4 GLN A 789 -110.36 -134.52 REMARK 500 4 GLU A 790 134.80 -171.65 REMARK 500 4 GLU A 791 121.39 -37.64 REMARK 500 4 THR A 793 60.61 65.64 REMARK 500 4 GLU A 794 97.66 -66.76 REMARK 500 5 ASP A 692 -54.64 72.97 REMARK 500 5 ASP A 693 69.64 -164.25 REMARK 500 5 PRO A 723 29.55 -75.80 REMARK 500 5 ASP A 724 173.41 63.19 REMARK 500 5 GLU A 725 -10.87 -141.21 REMARK 500 5 ASN A 739 146.12 70.49 REMARK 500 5 ALA A 745 -49.56 -167.26 REMARK 500 5 SER A 755 44.75 -101.43 REMARK 500 5 ARG A 796 -59.73 68.98 REMARK 500 6 ASP A 692 -62.21 71.09 REMARK 500 REMARK 500 THIS ENTRY HAS 241 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16552 RELATED DB: BMRB REMARK 900 RESONANCES ASSIGNMENT FOR THE RCSD-ABL REMARK 900 RELATED ID: 1SR2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE ESCHERICHIA COLI YOJN HISTIDINE- REMARK 900 PHOSPHOTRANSFERASE (HPT) DOMAIN DBREF 2KX7 A 688 795 UNP P39838 YOJN_ECOLI 688 795 SEQADV 2KX7 MET A 687 UNP P39838 INITIATING METHIONINE SEQADV 2KX7 ARG A 796 UNP P39838 EXPRESSION TAG SEQADV 2KX7 SER A 797 UNP P39838 EXPRESSION TAG SEQADV 2KX7 HIS A 798 UNP P39838 EXPRESSION TAG SEQADV 2KX7 HIS A 799 UNP P39838 EXPRESSION TAG SEQADV 2KX7 HIS A 800 UNP P39838 EXPRESSION TAG SEQADV 2KX7 HIS A 801 UNP P39838 EXPRESSION TAG SEQADV 2KX7 HIS A 802 UNP P39838 EXPRESSION TAG SEQADV 2KX7 HIS A 803 UNP P39838 EXPRESSION TAG SEQRES 1 A 117 MET GLU ARG LEU LEU ASP ASP VAL CYS VAL MET VAL ASP SEQRES 2 A 117 VAL THR SER ALA GLU ILE ARG ASN ILE VAL THR ARG GLN SEQRES 3 A 117 LEU GLU ASN TRP GLY ALA THR CYS ILE THR PRO ASP GLU SEQRES 4 A 117 ARG LEU ILE SER GLN ASP TYR ASP ILE PHE LEU THR ASP SEQRES 5 A 117 ASN PRO SER ASN LEU THR ALA SER GLY LEU LEU LEU SER SEQRES 6 A 117 ASP ASP GLU SER GLY VAL ARG GLU ILE GLY PRO GLY GLN SEQRES 7 A 117 LEU CYS VAL ASN PHE ASN MET SER ASN ALA MET GLN GLU SEQRES 8 A 117 ALA VAL LEU GLN LEU ILE GLU VAL GLN LEU ALA GLN GLU SEQRES 9 A 117 GLU VAL THR GLU SER ARG SER HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 702 TRP A 716 1 15 HELIX 2 2 PRO A 740 LEU A 743 5 4 HELIX 3 3 MET A 771 GLN A 789 1 19 SHEET 1 A 6 ALA A 718 ILE A 721 0 SHEET 2 A 6 VAL A 694 ASP A 699 1 N VAL A 696 O ILE A 721 SHEET 3 A 6 ILE A 734 ASP A 738 1 O LEU A 736 N MET A 697 SHEET 4 A 6 GLY A 747 LEU A 750 1 O LEU A 750 N THR A 737 SHEET 5 A 6 GLN A 764 VAL A 767 1 O VAL A 767 N LEU A 749 SHEET 6 A 6 VAL A 757 GLY A 761 -1 N ARG A 758 O CYS A 766 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1