HEADER PROTEIN BINDING 05-MAY-10 2KXH TITLE SOLUTION STRUCTURE OF THE FIRST TWO RRM DOMAINS OF FIR IN THE COMPLEX TITLE 2 WITH FBP NBOX PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(U)-BINDING-SPLICING FACTOR PUF60; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 119-314; COMPND 5 SYNONYM: 60 KDA POLY(U)-BINDING-SPLICING FACTOR, FUSE-BINDING COMPND 6 PROTEIN-INTERACTING REPRESSOR, FBP-INTERACTING REPRESSOR, SIAH- COMPND 7 BINDING PROTEIN 1, SIAH-BP1, RO-BINDING PROTEIN 1, ROBP1; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PEPTIDE OF FAR UPSTREAM ELEMENT-BINDING PROTEIN 1; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 27-52; COMPND 13 SYNONYM: FUSE-BINDING PROTEIN 1, FBP, DNA HELICASE V, HDH V; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PETM-30; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 18 EXPRESSION_SYSTEM_VECTOR: PETM-30 KEYWDS RRM, FIR, FBP, PROTEIN-PROTEIN COMPLEX, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.D.CUKIER,A.RAMOS,D.HOLLINGWORTH,I.DIAZ-MORENO,G.KELLY REVDAT 3 01-MAY-24 2KXH 1 REMARK REVDAT 2 18-DEC-19 2KXH 1 JRNL REMARK SEQADV REVDAT 1 18-AUG-10 2KXH 0 JRNL AUTH C.D.CUKIER,D.HOLLINGWORTH,S.R.MARTIN,G.KELLY,I.DIAZ-MORENO, JRNL AUTH 2 A.RAMOS JRNL TITL MOLECULAR BASIS OF FIR-MEDIATED C-MYC TRANSCRIPTIONAL JRNL TITL 2 CONTROL. JRNL REF NAT.STRUCT.MOL.BIOL. V. 17 1058 2010 JRNL REFN ESSN 1545-9985 JRNL PMID 20711187 JRNL DOI 10.1038/NSMB.1883 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), LINGE, REMARK 3 O'DONOGHUE AND NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KXH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101695. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310; 318 REMARK 210 PH : 8.0; 8.0 REMARK 210 IONIC STRENGTH : 0.06; 0.06 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-15N] PROTEIN_1-1, 10 REMARK 210 MM TRIS-HCL PH 8.0-2, 50 MM REMARK 210 SODIUM CHLORIDE-3, 2 MM TCEP-4, REMARK 210 1.25 MM PROTEIN_2-5, 90% H2O/10% REMARK 210 D2O; MM [U-13C; U-15N] PROTEIN_1- REMARK 210 6, 10 MM TRIS-HCL PH 8.0-7, 50 REMARK 210 MM SODIUM CHLORIDE-8, 2 MM TCEP- REMARK 210 9, MM PROTEIN_2-10, 90% H2O/10% REMARK 210 D2O; 0.3 MM [U-13C; U-15N] REMARK 210 PROTEIN_2-11, 10 MM TRIS-HCL PH REMARK 210 8.0-12, 50 MM SODIUM CHLORIDE-13, REMARK 210 2 MM TCEP-14, MM PROTEIN_1-15, REMARK 210 100% D2O; MM [U-13C; U-15N] REMARK 210 PROTEIN_1-16, 10 MM TRIS-HCL PH REMARK 210 8.0-17, 50 MM SODIUM CHLORIDE-18, REMARK 210 2 MM TCEP-19, MM PROTEIN_2-20, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HCCH-TOCSY; 3D 13C REMARK 210 REJECTED 1H-13C NOESY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY WITHOUT REMARK 210 13C DECOUPLING DURING THE REMARK 210 INDIRECTLY ACQUIRED PROTON REMARK 210 DIMENSION; 3D 1H-13C NOESY REMARK 210 OPTMISED FOR AROMATICS REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, SPARKY, XEASY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE1 PHE A 273 HB1 ALA B 38 1.26 REMARK 500 HD1 HIS A 217 OD1 ASP A 219 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A 101 78.13 64.94 REMARK 500 1 ARG A 104 74.27 49.79 REMARK 500 1 GLN A 105 95.52 62.83 REMARK 500 1 TYR A 120 -82.72 -45.17 REMARK 500 1 TYR A 121 -64.54 -178.38 REMARK 500 1 PHE A 135 -70.16 -80.05 REMARK 500 1 SER A 147 162.73 69.13 REMARK 500 1 PRO A 188 80.54 -68.06 REMARK 500 1 SER A 189 -54.31 -143.90 REMARK 500 1 ASN A 209 43.17 32.32 REMARK 500 1 LYS A 248 -84.67 -108.04 REMARK 500 1 PHE A 273 97.12 -51.26 REMARK 500 1 LEU A 280 -178.51 -66.78 REMARK 500 1 PRO A 288 104.17 -51.04 REMARK 500 1 PRO A 289 40.11 -83.04 REMARK 500 1 LEU A 292 40.71 -94.37 REMARK 500 1 TYR B 26 53.18 -100.65 REMARK 500 2 ALA A 100 84.59 62.59 REMARK 500 2 SER A 118 77.89 168.12 REMARK 500 2 TYR A 120 -75.06 -60.06 REMARK 500 2 TYR A 121 -53.17 -169.12 REMARK 500 2 LEU A 123 108.43 -58.58 REMARK 500 2 PHE A 135 -75.32 -92.70 REMARK 500 2 ASP A 146 91.56 -66.48 REMARK 500 2 MET A 150 -157.20 61.69 REMARK 500 2 LYS A 151 105.42 73.54 REMARK 500 2 LYS A 153 31.73 -92.35 REMARK 500 2 LEU A 178 91.57 -69.83 REMARK 500 2 SER A 189 -52.79 -171.63 REMARK 500 2 PHE A 273 98.82 -56.94 REMARK 500 2 LEU A 280 -169.78 -71.95 REMARK 500 2 VAL A 286 -77.77 71.07 REMARK 500 2 TYR B 26 23.24 -150.12 REMARK 500 2 ASN B 28 -52.41 -137.80 REMARK 500 3 TYR A 120 -94.52 36.31 REMARK 500 3 TYR A 121 -62.03 -178.71 REMARK 500 3 GLU A 122 45.21 -91.63 REMARK 500 3 ARG A 187 78.06 66.56 REMARK 500 3 GLN A 218 -8.80 -58.61 REMARK 500 3 PHE A 273 102.78 -54.43 REMARK 500 3 LEU A 280 -169.10 -69.10 REMARK 500 3 VAL A 286 -62.48 72.35 REMARK 500 3 MET A 290 80.32 -154.54 REMARK 500 3 PRO A 295 74.50 -69.67 REMARK 500 3 MET B 24 86.66 63.82 REMARK 500 3 ASP B 29 -62.52 -100.68 REMARK 500 3 ILE B 45 -179.45 52.92 REMARK 500 3 ALA B 49 31.34 -97.81 REMARK 500 4 ALA A 100 -61.98 70.73 REMARK 500 4 GLN A 103 78.12 -155.75 REMARK 500 REMARK 500 THIS ENTRY HAS 296 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KXF RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE FIRST TWO RRM DOMAINS OF FBP-INTERACTING REMARK 900 REPRESSOR (FIR) DBREF 2KXH A 102 297 UNP Q9UHX1 PUF60_HUMAN 119 314 DBREF 2KXH B 27 52 UNP Q96AE4 FUBP1_HUMAN 27 52 SEQADV 2KXH GLY A 99 UNP Q9UHX1 EXPRESSION TAG SEQADV 2KXH ALA A 100 UNP Q9UHX1 EXPRESSION TAG SEQADV 2KXH MET A 101 UNP Q9UHX1 EXPRESSION TAG SEQADV 2KXH GLY B 22 UNP Q96AE4 EXPRESSION TAG SEQADV 2KXH ALA B 23 UNP Q96AE4 EXPRESSION TAG SEQADV 2KXH MET B 24 UNP Q96AE4 EXPRESSION TAG SEQADV 2KXH GLY B 25 UNP Q96AE4 EXPRESSION TAG SEQADV 2KXH TYR B 26 UNP Q96AE4 EXPRESSION TAG SEQRES 1 A 199 GLY ALA MET ALA GLN ARG GLN ARG ALA LEU ALA ILE MET SEQRES 2 A 199 CYS ARG VAL TYR VAL GLY SER ILE TYR TYR GLU LEU GLY SEQRES 3 A 199 GLU ASP THR ILE ARG GLN ALA PHE ALA PRO PHE GLY PRO SEQRES 4 A 199 ILE LYS SER ILE ASP MET SER TRP ASP SER VAL THR MET SEQRES 5 A 199 LYS HIS LYS GLY PHE ALA PHE VAL GLU TYR GLU VAL PRO SEQRES 6 A 199 GLU ALA ALA GLN LEU ALA LEU GLU GLN MET ASN SER VAL SEQRES 7 A 199 MET LEU GLY GLY ARG ASN ILE LYS VAL GLY ARG PRO SER SEQRES 8 A 199 ASN ILE GLY GLN ALA GLN PRO ILE ILE ASP GLN LEU ALA SEQRES 9 A 199 GLU GLU ALA ARG ALA PHE ASN ARG ILE TYR VAL ALA SER SEQRES 10 A 199 VAL HIS GLN ASP LEU SER ASP ASP ASP ILE LYS SER VAL SEQRES 11 A 199 PHE GLU ALA PHE GLY LYS ILE LYS SER CYS THR LEU ALA SEQRES 12 A 199 ARG ASP PRO THR THR GLY LYS HIS LYS GLY TYR GLY PHE SEQRES 13 A 199 ILE GLU TYR GLU LYS ALA GLN SER SER GLN ASP ALA VAL SEQRES 14 A 199 SER SER MET ASN LEU PHE ASP LEU GLY GLY GLN TYR LEU SEQRES 15 A 199 ARG VAL GLY LYS ALA VAL THR PRO PRO MET PRO LEU LEU SEQRES 16 A 199 THR PRO ALA THR SEQRES 1 B 31 GLY ALA MET GLY TYR VAL ASN ASP ALA PHE LYS ASP ALA SEQRES 2 B 31 LEU GLN ARG ALA ARG GLN ILE ALA ALA LYS ILE GLY GLY SEQRES 3 B 31 ASP ALA GLY THR SER HELIX 1 1 GLN A 105 CYS A 112 1 8 HELIX 2 2 GLY A 124 PHE A 132 1 9 HELIX 3 3 VAL A 162 GLN A 172 1 11 HELIX 4 4 ALA A 194 ARG A 206 1 13 HELIX 5 5 SER A 221 GLY A 233 1 13 HELIX 6 6 LYS A 259 ASN A 271 1 13 HELIX 7 7 ASP B 29 ILE B 45 1 17 SHEET 1 A 4 ILE A 138 MET A 143 0 SHEET 2 A 4 ALA A 156 TYR A 160 -1 O GLU A 159 N LYS A 139 SHEET 3 A 4 ARG A 113 GLY A 117 -1 N VAL A 116 O ALA A 156 SHEET 4 A 4 LYS A 184 VAL A 185 -1 O LYS A 184 N GLY A 117 SHEET 1 B 4 ILE A 235 LEU A 240 0 SHEET 2 B 4 TYR A 252 TYR A 257 -1 O GLU A 256 N SER A 237 SHEET 3 B 4 ARG A 210 ALA A 214 -1 N ILE A 211 O ILE A 255 SHEET 4 B 4 ARG A 281 LYS A 284 -1 O ARG A 281 N ALA A 214 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1