HEADER TRANSFERASE 06-MAY-10 2KXI TITLE SOLUTION NMR STRUCTURE OF THE APOFORM OF NARE (NMB1343) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: NMB1343; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 122586; SOURCE 4 STRAIN: MC58; SOURCE 5 VARIANT: SEROGROUP B; SOURCE 6 GENE: NMB1343; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET21B+ KEYWDS ADP RIBOSYLTRANSFERASE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.KOEHLER,L.CARLIER,D.VEGGI,M.SORIANI,M.PIZZA,R.BOELENS, AUTHOR 2 A.M.J.J.BONVIN REVDAT 2 08-AUG-18 2KXI 1 COMPND SOURCE REMARK REVDAT 1 02-MAR-11 2KXI 0 SPRSDE 02-MAR-11 2KXI 2KWR JRNL AUTH C.KOEHLER,L.CARLIER,D.VEGGI,M.SORIANI,M.PIZZA,R.BOELENS, JRNL AUTH 2 A.M.J.J.BONVIN JRNL TITL SOLUTION NMR STRUCTURE OF THE APOFORM OF NARE (NMB1343) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS REFINEMENT IN WATER REMARK 4 REMARK 4 2KXI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101696. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.3 MM [U-100% 15N] NMB1343, 75 REMARK 210 MM SODIUM CHLORIDE, 25 MM SODIUM REMARK 210 PHOSPHATE, 0.01 % SODIUM AZIDE, REMARK 210 0.5 MM TSP, 1 MM DTT, 90% H2O/10% REMARK 210 D2O; 0.6 MM [U-100% 13C; U-100% REMARK 210 15N] NMB1343, 75 MM SODIUM REMARK 210 CHLORIDE, 25 MM SODIUM PHOSPHATE, REMARK 210 0.01 % SODIUM AZIDE, 0.5 MM TSP, REMARK 210 1 MM DTT, 90% H2O/10% D2O; 0.8 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 NMB1343, 75 MM SODIUM CHLORIDE, REMARK 210 25 MM SODIUM PHOSPHATE, 0.01 % REMARK 210 SODIUM AZIDE, 0.5 MM TSP, 1 MM REMARK 210 DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-TOCSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY; 2D 1H-15N REMARK 210 HSQC T1 EDITED; 2D 1H-15N HSQC REMARK 210 T2 EDITED; 2D 1H-15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; OXFORD REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, SPARKY, CYANA, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 20 27.90 -161.54 REMARK 500 1 LEU A 21 -43.43 73.57 REMARK 500 1 LYS A 27 -154.25 -162.37 REMARK 500 1 ALA A 28 -77.89 74.71 REMARK 500 1 ALA A 31 -70.17 -57.03 REMARK 500 1 ILE A 32 122.20 64.64 REMARK 500 1 ASP A 41 -136.93 57.40 REMARK 500 1 LYS A 43 -80.89 -82.28 REMARK 500 1 ALA A 44 -34.96 -177.53 REMARK 500 1 SER A 49 117.09 67.98 REMARK 500 1 VAL A 50 -175.57 61.38 REMARK 500 1 LYS A 51 177.64 68.47 REMARK 500 1 GLU A 60 -60.25 -92.22 REMARK 500 1 THR A 61 -73.25 -90.80 REMARK 500 1 LEU A 63 90.97 -62.46 REMARK 500 1 SER A 104 32.37 71.24 REMARK 500 1 PRO A 113 158.39 -46.59 REMARK 500 1 CYS A 130 70.83 55.18 REMARK 500 1 ILE A 144 108.91 66.44 REMARK 500 1 GLU A 147 -158.15 70.48 REMARK 500 1 HIS A 148 -71.72 69.56 REMARK 500 1 HIS A 152 -42.43 -168.89 REMARK 500 2 ASN A 3 -82.17 -177.94 REMARK 500 2 LEU A 21 95.44 61.83 REMARK 500 2 LYS A 22 118.23 56.59 REMARK 500 2 ASN A 26 -172.55 -179.39 REMARK 500 2 LYS A 37 79.13 -115.86 REMARK 500 2 TYR A 40 -156.05 -156.24 REMARK 500 2 ASP A 41 48.97 -159.17 REMARK 500 2 LYS A 43 53.21 -142.63 REMARK 500 2 THR A 45 73.75 65.22 REMARK 500 2 SER A 49 -134.66 55.64 REMARK 500 2 VAL A 50 -158.59 46.78 REMARK 500 2 LYS A 51 -127.88 47.20 REMARK 500 2 THR A 61 -71.21 -89.40 REMARK 500 2 LEU A 63 47.37 -152.71 REMARK 500 2 GLU A 88 -35.30 -32.54 REMARK 500 2 SER A 104 34.27 70.63 REMARK 500 2 PRO A 113 164.33 -46.85 REMARK 500 2 VAL A 121 95.12 -69.07 REMARK 500 2 CYS A 130 72.66 58.60 REMARK 500 2 GLU A 143 68.60 -118.04 REMARK 500 2 ILE A 144 119.49 63.36 REMARK 500 3 LEU A 21 49.54 -79.19 REMARK 500 3 ALA A 28 78.49 -162.60 REMARK 500 3 GLU A 29 88.42 -68.65 REMARK 500 3 ILE A 32 155.22 64.04 REMARK 500 3 ARG A 33 97.24 -175.20 REMARK 500 3 ASP A 35 -162.22 62.62 REMARK 500 3 TYR A 40 79.67 63.16 REMARK 500 REMARK 500 THIS ENTRY HAS 407 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KXI A 1 145 UNP Q9JZ10 Q9JZ10_NEIMB 1 145 SEQADV 2KXI LEU A 146 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI GLU A 147 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI HIS A 148 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI HIS A 149 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI HIS A 150 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI HIS A 151 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI HIS A 152 UNP Q9JZ10 EXPRESSION TAG SEQADV 2KXI HIS A 153 UNP Q9JZ10 EXPRESSION TAG SEQRES 1 A 153 MET GLY ASN PHE LEU TYR ARG GLY ILE SER CYS GLN GLN SEQRES 2 A 153 ASP GLU GLN ASN ASN GLY GLN LEU LYS PRO LYS GLY ASN SEQRES 3 A 153 LYS ALA GLU VAL ALA ILE ARG TYR ASP GLY LYS PHE LYS SEQRES 4 A 153 TYR ASP GLY LYS ALA THR HIS GLY PRO SER VAL LYS ASN SEQRES 5 A 153 ALA VAL TYR ALA HIS GLN ILE GLU THR GLY LEU TYR ASP SEQRES 6 A 153 GLY CYS TYR ILE SER THR THR THR ASP LYS GLU ILE ALA SEQRES 7 A 153 LYS LYS PHE ALA THR SER SER GLY ILE GLU ASN GLY TYR SEQRES 8 A 153 ILE TYR VAL LEU ASN ARG ASP LEU PHE GLY GLN TYR SER SEQRES 9 A 153 ILE PHE GLU TYR GLU VAL GLU HIS PRO GLU ASN PRO ASN SEQRES 10 A 153 GLU LYS GLU VAL THR ILE ARG ALA GLU ASP CYS GLY CYS SEQRES 11 A 153 ILE PRO GLU GLU VAL ILE ILE ALA LYS GLU LEU ILE GLU SEQRES 12 A 153 ILE ASN LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 CYS A 11 GLY A 19 1 9 HELIX 2 2 VAL A 50 THR A 61 1 12 HELIX 3 3 GLU A 76 SER A 85 1 10 HELIX 4 4 ARG A 97 SER A 104 1 8 SHEET 1 A 3 PHE A 4 ILE A 9 0 SHEET 2 A 3 ASN A 89 ASN A 96 -1 O TYR A 93 N ARG A 7 SHEET 3 A 3 ILE A 136 GLU A 143 -1 O GLU A 140 N ILE A 92 SHEET 1 B 3 ILE A 69 THR A 72 0 SHEET 2 B 3 LYS A 119 ARG A 124 -1 O ILE A 123 N ILE A 69 SHEET 3 B 3 PHE A 106 GLU A 111 -1 N TYR A 108 O THR A 122 SSBOND 1 CYS A 67 CYS A 128 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1