HEADER PROTEIN BINDING 06-MAY-10 2KXJ TITLE SOLUTION STRUCTURE OF UBX DOMAIN OF HUMAN UBXD2 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBX DOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBX DOMAIN, UNP RESIDUES 317-397; COMPND 5 SYNONYM: UBX DOMAIN-CONTAINING PROTEIN 2, ERASIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBXN4, KIAA0242, UBXD2, UBXDC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: P28 KEYWDS UBXD2, UBX, VCP, P97, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Q.WU,H.HUANG,J.ZHANG,Q.HU,J.WU,Y.SHI REVDAT 1 18-MAY-11 2KXJ 0 JRNL AUTH Q.WU,H.HUANG,J.ZHANG,Q.HU,J.WU,Y.SHI JRNL TITL SOLUTION STRCTURE OF UBX DOMAIN OF HUMAN UBXD2 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KXJ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-10. REMARK 100 THE RCSB ID CODE IS RCSB101697. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N] REMARK 210 UBX-1, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D C(CO)NH; 3D HNCO; 3D HNCACB; REMARK 210 3D HBHA(CO)NH; 3D HCCH-COSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 311 36.86 -149.11 REMARK 500 1 HIS A 314 103.69 67.95 REMARK 500 1 HIS A 315 -46.52 -167.04 REMARK 500 1 ASN A 355 89.46 -166.70 REMARK 500 1 THR A 356 -62.07 -140.62 REMARK 500 1 PRO A 367 31.61 -87.76 REMARK 500 1 ARG A 368 82.54 57.32 REMARK 500 1 GLU A 370 166.81 66.74 REMARK 500 1 GLU A 384 70.74 58.55 REMARK 500 1 PRO A 395 153.23 -44.34 REMARK 500 1 ALA A 396 68.01 -116.70 REMARK 500 2 HIS A 313 106.92 -163.44 REMARK 500 2 THR A 318 50.34 -144.40 REMARK 500 2 ASN A 355 91.72 -169.67 REMARK 500 2 THR A 356 -61.75 -139.88 REMARK 500 2 GLU A 370 -170.01 66.93 REMARK 500 2 GLU A 384 75.36 58.39 REMARK 500 2 LEU A 394 50.52 -119.86 REMARK 500 3 HIS A 315 102.69 -170.84 REMARK 500 3 MET A 316 -51.83 -166.09 REMARK 500 3 SER A 317 152.57 65.06 REMARK 500 3 THR A 318 45.49 -169.52 REMARK 500 3 ASN A 355 98.16 -161.71 REMARK 500 3 THR A 356 -48.73 -150.53 REMARK 500 3 GLU A 370 -162.23 61.82 REMARK 500 3 GLU A 384 77.93 59.12 REMARK 500 3 ALA A 396 38.02 -140.50 REMARK 500 4 HIS A 311 84.03 63.45 REMARK 500 4 HIS A 313 -51.30 -159.35 REMARK 500 4 HIS A 314 93.72 57.24 REMARK 500 4 ASN A 355 97.73 -163.46 REMARK 500 4 THR A 356 -51.60 -152.59 REMARK 500 4 GLU A 370 135.28 71.35 REMARK 500 4 LEU A 383 -67.60 -95.28 REMARK 500 4 GLU A 384 66.25 170.97 REMARK 500 4 LEU A 394 53.13 -119.87 REMARK 500 5 HIS A 310 33.39 -159.78 REMARK 500 5 ASN A 355 65.83 60.24 REMARK 500 5 MET A 365 -81.34 -57.54 REMARK 500 5 GLU A 370 176.28 67.41 REMARK 500 5 LYS A 379 -164.43 -73.86 REMARK 500 5 GLU A 384 71.75 57.22 REMARK 500 5 LEU A 394 65.03 -119.95 REMARK 500 5 ALA A 396 33.20 -146.41 REMARK 500 6 HIS A 311 64.84 -105.25 REMARK 500 6 HIS A 315 -65.14 -136.67 REMARK 500 6 VAL A 353 54.92 -102.26 REMARK 500 6 ASN A 355 33.52 -163.54 REMARK 500 6 THR A 356 -63.52 -133.81 REMARK 500 6 ASN A 359 73.42 -100.05 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2KXJ A 317 397 UNP Q92575 UBXN4_HUMAN 317 397 SEQADV 2KXJ MET A 308 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ GLY A 309 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ HIS A 310 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ HIS A 311 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ HIS A 312 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ HIS A 313 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ HIS A 314 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ HIS A 315 UNP Q92575 EXPRESSION TAG SEQADV 2KXJ MET A 316 UNP Q92575 EXPRESSION TAG SEQRES 1 A 90 MET GLY HIS HIS HIS HIS HIS HIS MET SER THR VAL ALA SEQRES 2 A 90 ARG ILE GLN PHE ARG LEU PRO ASP GLY SER SER PHE THR SEQRES 3 A 90 ASN GLN PHE PRO SER ASP ALA PRO LEU GLU GLU ALA ARG SEQRES 4 A 90 GLN PHE ALA ALA GLN THR VAL GLY ASN THR TYR GLY ASN SEQRES 5 A 90 PHE SER LEU ALA THR MET PHE PRO ARG ARG GLU PHE THR SEQRES 6 A 90 LYS GLU ASP TYR LYS LYS LYS LEU LEU ASP LEU GLU LEU SEQRES 7 A 90 ALA PRO SER ALA SER VAL VAL LEU LEU PRO ALA GLY HELIX 1 1 LEU A 342 GLY A 354 1 13 HELIX 2 2 THR A 372 LYS A 378 1 7 HELIX 3 3 LEU A 380 GLU A 384 5 5 SHEET 1 A 4 SER A 331 PRO A 337 0 SHEET 2 A 4 VAL A 319 ARG A 325 -1 N PHE A 324 O PHE A 332 SHEET 3 A 4 ALA A 389 LEU A 393 1 O VAL A 391 N GLN A 323 SHEET 4 A 4 LEU A 362 THR A 364 -1 N ALA A 363 O VAL A 392 CISPEP 1 PHE A 366 PRO A 367 1 0.55 CISPEP 2 ALA A 386 PRO A 387 1 0.36 CISPEP 3 PHE A 366 PRO A 367 2 -0.01 CISPEP 4 ALA A 386 PRO A 387 2 0.33 CISPEP 5 PHE A 366 PRO A 367 3 -0.04 CISPEP 6 ALA A 386 PRO A 387 3 0.32 CISPEP 7 PHE A 366 PRO A 367 4 0.05 CISPEP 8 ALA A 386 PRO A 387 4 0.45 CISPEP 9 PHE A 366 PRO A 367 5 -0.02 CISPEP 10 ALA A 386 PRO A 387 5 0.39 CISPEP 11 PHE A 366 PRO A 367 6 -0.10 CISPEP 12 ALA A 386 PRO A 387 6 0.21 CISPEP 13 PHE A 366 PRO A 367 7 0.13 CISPEP 14 ALA A 386 PRO A 387 7 0.40 CISPEP 15 PHE A 366 PRO A 367 8 -0.03 CISPEP 16 ALA A 386 PRO A 387 8 0.51 CISPEP 17 PHE A 366 PRO A 367 9 0.04 CISPEP 18 ALA A 386 PRO A 387 9 0.66 CISPEP 19 PHE A 366 PRO A 367 10 0.03 CISPEP 20 ALA A 386 PRO A 387 10 0.43 CISPEP 21 PHE A 366 PRO A 367 11 -0.08 CISPEP 22 ALA A 386 PRO A 387 11 0.34 CISPEP 23 PHE A 366 PRO A 367 12 -0.08 CISPEP 24 ALA A 386 PRO A 387 12 0.50 CISPEP 25 PHE A 366 PRO A 367 13 -0.02 CISPEP 26 ALA A 386 PRO A 387 13 0.32 CISPEP 27 PHE A 366 PRO A 367 14 -0.01 CISPEP 28 ALA A 386 PRO A 387 14 0.49 CISPEP 29 PHE A 366 PRO A 367 15 -0.07 CISPEP 30 ALA A 386 PRO A 387 15 0.36 CISPEP 31 PHE A 366 PRO A 367 16 0.15 CISPEP 32 ALA A 386 PRO A 387 16 0.28 CISPEP 33 PHE A 366 PRO A 367 17 0.06 CISPEP 34 ALA A 386 PRO A 387 17 0.40 CISPEP 35 PHE A 366 PRO A 367 18 0.15 CISPEP 36 ALA A 386 PRO A 387 18 0.33 CISPEP 37 PHE A 366 PRO A 367 19 0.01 CISPEP 38 ALA A 386 PRO A 387 19 0.34 CISPEP 39 PHE A 366 PRO A 367 20 -0.16 CISPEP 40 ALA A 386 PRO A 387 20 0.61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1