HEADER UNKNOWN FUNCTION 13-MAY-10 2KXV TITLE NMR STRUCTURE AND CALCIUM-BINDING PROPERTIES OF THE TELLURITE TITLE 2 RESISTANCE PROTEIN TERD FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELLURITE RESISTANCE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 484021; SOURCE 4 STRAIN: NTUH-K2044; SOURCE 5 GENE: TERD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL 21 DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET29B KEYWDS KP-TERD, TELLURITE RESISTANCE, CA2+ BINDING PROTEIN, CALCIUM KEYWDS 2 SIGNALING, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.R.PAN,Y.C.LOU,J.RIZO,C.CHEN REVDAT 2 01-MAY-24 2KXV 1 REMARK SEQADV LINK REVDAT 1 22-DEC-10 2KXV 0 JRNL AUTH Y.R.PAN,Y.C.LOU,A.B.SEVEN,J.RIZO,C.CHEN JRNL TITL NMR STRUCTURE AND CALCIUM-BINDING PROPERTIES OF THE JRNL TITL 2 TELLURITE RESISTANCE PROTEIN TERD FROM KLEBSIELLA PNEUMONIAE JRNL REF J.MOL.BIOL. 2010 JRNL REFN ESSN 1089-8638 JRNL PMID 21112337 JRNL DOI 10.1016/J.JMB.2010.11.041 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AURELIA 3.1.6, X-PLOR NIH REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (AURELIA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KXV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101709. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.02 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM POTASSIUM PHOSPHATE-1, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HN(CO)CA; 3D C(CO)NH; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 3D HCCH-TOCSY; 3D HBHA(CO)NH; REMARK 210 3D HNHA; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, X-PLOR NIH, VNMR REMARK 210 5.0, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 500 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -17 REMARK 465 SER A -16 REMARK 465 VAL A -15 REMARK 465 SER A -14 REMARK 465 LEU A -13 REMARK 465 SER A -12 REMARK 465 LYS A -11 REMARK 465 GLY A -10 REMARK 465 GLY A -9 REMARK 465 ASN A -8 REMARK 465 VAL A -7 REMARK 465 SER A -6 REMARK 465 LEU A -5 REMARK 465 SER A -4 REMARK 465 LYS A -3 REMARK 465 THR A -2 REMARK 465 ALA A -1 REMARK 465 PRO A 0 REMARK 465 LEU A 175 REMARK 465 GLU A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 HIS A 180 REMARK 465 HIS A 181 REMARK 465 HIS A 182 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 17 16.18 -155.71 REMARK 500 1 ARG A 37 4.86 -66.20 REMARK 500 1 ALA A 40 -2.70 -56.30 REMARK 500 1 SER A 54 15.33 57.33 REMARK 500 1 ASN A 61 -171.57 -68.05 REMARK 500 1 THR A 63 -34.99 -157.09 REMARK 500 1 ASP A 67 43.94 -77.57 REMARK 500 1 ASP A 69 99.36 -62.25 REMARK 500 1 ASP A 70 -81.47 -50.41 REMARK 500 1 PRO A 81 174.90 -44.34 REMARK 500 1 HIS A 94 -138.76 -61.88 REMARK 500 1 ARG A 100 79.71 58.98 REMARK 500 1 GLN A 101 64.42 -150.95 REMARK 500 1 ASP A 116 -7.30 -55.88 REMARK 500 1 THR A 128 -19.48 -45.14 REMARK 500 1 SER A 132 2.93 -61.83 REMARK 500 1 GLU A 134 -150.24 -166.34 REMARK 500 1 VAL A 154 -33.12 -137.15 REMARK 500 1 ALA A 159 39.23 -71.18 REMARK 500 2 LYS A 3 -19.43 -48.55 REMARK 500 2 THR A 16 -35.21 -158.18 REMARK 500 2 ASP A 17 40.73 -158.10 REMARK 500 2 ARG A 37 1.90 -63.21 REMARK 500 2 ALA A 40 -5.14 -55.68 REMARK 500 2 PHE A 44 -162.63 -171.27 REMARK 500 2 TYR A 45 -113.17 54.05 REMARK 500 2 SER A 54 13.38 56.56 REMARK 500 2 ASN A 61 -166.50 -64.94 REMARK 500 2 THR A 63 -34.61 -153.52 REMARK 500 2 ASP A 70 -78.15 -65.57 REMARK 500 2 LEU A 77 -7.77 -53.12 REMARK 500 2 PRO A 81 176.22 -44.73 REMARK 500 2 ASP A 95 -18.14 -49.63 REMARK 500 2 ARG A 100 89.43 59.20 REMARK 500 2 ASP A 130 -73.22 -87.06 REMARK 500 2 ALA A 131 20.09 -79.48 REMARK 500 2 SER A 132 -17.52 -43.64 REMARK 500 2 THR A 135 12.12 -140.55 REMARK 500 2 HIS A 145 -117.17 -109.97 REMARK 500 2 VAL A 154 -31.77 -133.67 REMARK 500 2 ALA A 159 35.67 -84.49 REMARK 500 3 MET A 2 42.82 -174.08 REMARK 500 3 LYS A 3 -38.29 -153.07 REMARK 500 3 THR A 16 -90.35 -91.63 REMARK 500 3 GLN A 19 176.71 -56.56 REMARK 500 3 ASP A 20 -166.18 -175.92 REMARK 500 3 ALA A 40 3.33 -61.54 REMARK 500 3 ASN A 46 -10.78 -49.07 REMARK 500 3 THR A 63 -34.16 -153.52 REMARK 500 3 ASP A 70 -72.68 -56.31 REMARK 500 REMARK 500 THIS ENTRY HAS 374 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 202 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A 11 O REMARK 620 2 GLY A 64 O 89.2 REMARK 620 3 GLY A 66 O 149.9 98.6 REMARK 620 4 ASP A 70 OD1 127.9 70.6 81.9 REMARK 620 5 ASP A 70 OD2 80.5 78.2 129.5 49.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 22 OD1 REMARK 620 2 ASP A 22 OD2 50.4 REMARK 620 3 LEU A 23 O 87.1 102.3 REMARK 620 4 ASP A 24 OD1 117.9 82.8 62.9 REMARK 620 5 ASP A 60 OD1 131.1 102.7 141.8 92.2 REMARK 620 6 ASP A 60 OD2 174.4 134.4 88.8 63.1 53.2 REMARK 620 7 ASN A 61 O 74.6 85.2 149.0 148.0 61.7 107.5 REMARK 620 8 GLU A 71 OE2 117.5 163.2 62.9 96.2 94.1 57.1 103.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KXT RELATED DB: PDB DBREF 2KXV A -17 174 UNP C4XDJ3 C4XDJ3_KLEPN 1 192 SEQADV 2KXV LEU A 175 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV GLU A 176 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV HIS A 177 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV HIS A 178 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV HIS A 179 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV HIS A 180 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV HIS A 181 UNP C4XDJ3 EXPRESSION TAG SEQADV 2KXV HIS A 182 UNP C4XDJ3 EXPRESSION TAG SEQRES 1 A 200 MET SER VAL SER LEU SER LYS GLY GLY ASN VAL SER LEU SEQRES 2 A 200 SER LYS THR ALA PRO SER MET LYS ASN VAL LEU VAL GLY SEQRES 3 A 200 LEU GLY TRP ASP ALA ARG SER THR ASP GLY GLN ASP PHE SEQRES 4 A 200 ASP LEU ASP ALA SER ALA PHE LEU LEU ALA ALA ASN GLY SEQRES 5 A 200 LYS VAL ARG GLY ASP ALA ASP PHE ILE PHE TYR ASN ASN SEQRES 6 A 200 LEU LYS SER ALA ASP GLY SER VAL THR HIS THR GLY ASP SEQRES 7 A 200 ASN ARG THR GLY GLU GLY ASP GLY ASP ASP GLU SER LEU SEQRES 8 A 200 LYS ILE LYS LEU ASP ALA VAL PRO GLY ASP VAL ASP LYS SEQRES 9 A 200 ILE ILE PHE VAL VAL THR ILE HIS ASP ALA GLN ALA ARG SEQRES 10 A 200 ARG GLN SER PHE GLY GLN VAL SER GLY ALA PHE ILE ARG SEQRES 11 A 200 LEU VAL ASN ASP ASP ASN GLN THR GLU VAL ALA ARG TYR SEQRES 12 A 200 ASP LEU THR GLU ASP ALA SER THR GLU THR ALA MET LEU SEQRES 13 A 200 PHE GLY GLU LEU TYR ARG HIS ASN GLY GLU TRP LYS PHE SEQRES 14 A 200 ARG ALA VAL GLY GLN GLY TYR ALA GLY GLY LEU ALA SER SEQRES 15 A 200 VAL CYS ALA GLN TYR GLY ILE ASN ALA SER LEU GLU HIS SEQRES 16 A 200 HIS HIS HIS HIS HIS HET CA A 201 1 HET CA A 202 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 GLY A 38 PHE A 42 5 5 HELIX 2 2 LEU A 77 VAL A 80 5 4 HELIX 3 3 ASP A 95 ALA A 98 5 4 HELIX 4 4 SER A 102 VAL A 106 5 5 HELIX 5 5 ASP A 126 ALA A 131 1 6 HELIX 6 6 ALA A 163 GLN A 168 1 6 HELIX 7 7 TYR A 169 ILE A 171 5 3 SHEET 1 A 5 VAL A 55 HIS A 57 0 SHEET 2 A 5 GLU A 71 ILE A 75 -1 O LYS A 74 N THR A 56 SHEET 3 A 5 VAL A 5 GLY A 10 -1 N LEU A 9 O GLU A 71 SHEET 4 A 5 PHE A 110 VAL A 114 -1 O ARG A 112 N GLY A 8 SHEET 5 A 5 GLU A 121 ALA A 123 -1 O VAL A 122 N LEU A 113 SHEET 1 B 4 LEU A 23 LEU A 30 0 SHEET 2 B 4 LYS A 86 ILE A 93 -1 O VAL A 90 N SER A 26 SHEET 3 B 4 MET A 137 HIS A 145 -1 O LEU A 142 N ILE A 87 SHEET 4 B 4 GLU A 148 GLN A 156 -1 O ARG A 152 N GLU A 141 LINK O TRP A 11 CA CA A 202 1555 1555 2.60 LINK OD1 ASP A 22 CA CA A 201 1555 1555 2.20 LINK OD2 ASP A 22 CA CA A 201 1555 1555 2.73 LINK O LEU A 23 CA CA A 201 1555 1555 2.61 LINK OD1 ASP A 24 CA CA A 201 1555 1555 2.61 LINK OD1 ASP A 60 CA CA A 201 1555 1555 2.26 LINK OD2 ASP A 60 CA CA A 201 1555 1555 2.52 LINK O ASN A 61 CA CA A 201 1555 1555 2.62 LINK O GLY A 64 CA CA A 202 1555 1555 2.42 LINK O GLY A 66 CA CA A 202 1555 1555 2.60 LINK OD1 ASP A 70 CA CA A 202 1555 1555 2.59 LINK OD2 ASP A 70 CA CA A 202 1555 1555 2.60 LINK OE2 GLU A 71 CA CA A 201 1555 1555 2.60 SITE 1 AC1 6 ASP A 22 LEU A 23 ASP A 24 ASP A 60 SITE 2 AC1 6 ASN A 61 GLU A 71 SITE 1 AC2 4 TRP A 11 GLY A 64 GLY A 66 ASP A 70 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1