data_2KY2 # _entry.id 2KY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.356 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2KY2 pdb_00002ky2 10.2210/pdb2ky2/pdb RCSB RCSB101716 ? ? WWPDB D_1000101716 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 2KXZ unspecified . PDB 2KY0 unspecified . PDB 2KY1 unspecified . BMRB 16950 unspecified . BMRB 16951 unspecified . BMRB 16952 unspecified . BMRB 16953 unspecified . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2KY2 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-05-13 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hammond, N.B.' 1 'Kennedy, S.D.' 2 'Turner, D.H.' 3 # _citation.id primary _citation.title ;RNA internal loops with tandem AG pairs: the structure of the 5'GAGU/3'UGAG loop can be dramatically different from others, including 5'AAGU/3'UGAA. ; _citation.journal_abbrev Biochemistry _citation.journal_volume 49 _citation.page_first 5817 _citation.page_last 5827 _citation.year 2010 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20481618 _citation.pdbx_database_id_DOI 10.1021/bi100332r # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Hammond, N.B.' 1 ? primary 'Tolbert, B.S.' 2 ? primary 'Kierzek, R.' 3 ? primary 'Turner, D.H.' 4 ? primary 'Kennedy, S.D.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description "5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3'" _entity.formula_weight 2910.807 _entity.pdbx_number_of_molecules 2 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUAGGCCA _entity_poly.pdbx_seq_one_letter_code_can GGUAGGCCA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 A n 1 5 G n 1 6 G n 1 7 C n 1 8 C n 1 9 A n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2KY2 _struct_ref.pdbx_db_accession 2KY2 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGUAGGCCA _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2KY2 A 1 ? 9 ? 2KY2 1 ? 9 ? 1 9 2 1 2KY2 B 1 ? 9 ? 2KY2 10 ? 18 ? 10 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 1 '2D 1H-13C HSQC' 1 3 2 '2D 1H-1H TOCSY' 1 4 2 '2D DQF-COSY' 1 5 2 '2D 1H-31P HETCOR' 1 6 2 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.1 _pdbx_nmr_exptl_sample_conditions.pH 6.1 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 274 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;1 mM RNA (5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3')-1, 80 mM sodium chloride-2, 10 mM sodium phosphate-3, 0.5 mM EDTA-4, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;1 mM RNA (5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3')-5, 80 mM sodium chloride-6, 10 mM sodium phosphate-7, 0.5 mM EDTA-8, 100% D2O ; 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Varian INOVA 1 'Varian INOVA' 500 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2KY2 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations' _pdbx_nmr_ensemble.conformers_calculated_total_number 40 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2KY2 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2KY2 _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Goddard 'chemical shift assignment' Sparky 3.12 1 Goddard 'data analysis' Sparky 3.12 2 Varian collection VNMR 6.1C 3 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.2 4 'Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm' refinement Amber 9 5 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details 'Tandem AG pairs with UG closing pairs: r(GGUAGGCCA)2' _exptl.entry_id 2KY2 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2KY2 _struct.title ;The Structure of RNA Internal Loops with Tandem AG Pairs: 5'UAGG/3'GGAU ; _struct.pdbx_model_details 'closest to the average, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2KY2 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'tandem AG pairs, thermodynamics, imino AG pair, dual syn GG pair, extrahelical U, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 1 B C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 2 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 2 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 2 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B G 6 O6 ? ? A U 3 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 B G 6 N1 ? ? A U 3 B G 15 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 B G 5 N1 ? ? A A 4 B G 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 B G 5 O6 ? ? A A 4 B G 14 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog11 hydrog ? ? A G 5 N1 ? ? ? 1_555 B A 4 N1 ? ? A G 5 B A 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 B A 4 N6 ? ? A G 5 B A 13 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A G 6 N1 ? ? ? 1_555 B U 3 O2 ? ? A G 6 B U 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 B U 3 N3 ? ? A G 6 B U 12 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 7 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 7 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 7 B G 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 8 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 8 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 8 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2KY2 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 G 6 6 6 G G A . n A 1 7 C 7 7 7 C C A . n A 1 8 C 8 8 8 C C A . n A 1 9 A 9 9 9 A A A . n B 1 1 G 1 10 10 G G B . n B 1 2 G 2 11 11 G G B . n B 1 3 U 3 12 12 U U B . n B 1 4 A 4 13 13 A A B . n B 1 5 G 5 14 14 G G B . n B 1 6 G 6 15 15 G G B . n B 1 7 C 7 16 16 C C B . n B 1 8 C 8 17 17 C C B . n B 1 9 A 9 18 18 A A B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-06-02 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2022-03-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' database_2 2 3 'Structure model' pdbx_nmr_software 3 3 'Structure model' pdbx_struct_assembly 4 3 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id ;RNA (5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3')-1 ; 1 ? mM ? 1 'sodium chloride-2' 80 ? mM ? 1 'sodium phosphate-3' 10 ? mM ? 1 EDTA-4 0.5 ? mM ? 1 ;RNA (5'-R(*GP*GP*UP*AP*GP*GP*CP*CP*A)-3')-5 ; 1 ? mM ? 2 'sodium chloride-6' 80 ? mM ? 2 'sodium phosphate-7' 10 ? mM ? 2 EDTA-8 0.5 ? mM ? 2 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.91 117.00 -3.09 0.50 N 2 1 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.21 117.70 3.51 0.50 N 3 1 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.16 118.60 -4.44 0.60 N 4 1 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 116.89 121.90 -5.01 0.70 N 5 1 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 112.77 108.50 4.27 0.70 N 6 1 N1 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 122.53 118.90 3.63 0.60 N 7 1 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.78 121.90 -5.12 0.70 N 8 1 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.91 117.00 -3.09 0.50 N 9 1 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.26 117.70 3.56 0.50 N 10 1 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.45 118.60 -5.15 0.60 N 11 1 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.91 117.00 -3.09 0.50 N 12 1 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.37 117.70 3.67 0.50 N 13 1 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.14 118.60 -4.46 0.60 N 14 1 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 116.93 121.90 -4.97 0.70 N 15 1 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.82 121.90 -5.08 0.70 N 16 1 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.29 117.70 3.59 0.50 N 17 1 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.39 118.60 -5.21 0.60 N 18 2 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.89 117.00 -3.11 0.50 N 19 2 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.28 117.70 3.58 0.50 N 20 2 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.16 118.60 -4.44 0.60 N 21 2 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.19 121.90 -4.71 0.70 N 22 2 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.99 121.90 -4.91 0.70 N 23 2 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.65 117.00 -3.35 0.50 N 24 2 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.58 117.70 3.88 0.50 N 25 2 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.04 118.60 -5.56 0.60 N 26 2 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 120.88 117.70 3.18 0.50 N 27 2 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.51 118.60 -4.09 0.60 N 28 2 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 117.13 121.90 -4.77 0.70 N 29 2 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.86 121.90 -5.04 0.70 N 30 2 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.62 117.00 -3.38 0.50 N 31 2 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.28 117.70 3.58 0.50 N 32 2 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.14 118.60 -5.46 0.60 N 33 3 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.37 117.70 3.67 0.50 N 34 3 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.62 118.60 -3.98 0.60 N 35 3 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 116.65 121.90 -5.25 0.70 N 36 3 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 117.18 121.90 -4.72 0.70 N 37 3 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.99 117.00 -3.01 0.50 N 38 3 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.19 117.70 3.49 0.50 N 39 3 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.50 118.60 -5.10 0.60 N 40 3 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.38 117.70 3.68 0.50 N 41 3 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.50 118.60 -4.10 0.60 N 42 3 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 117.04 121.90 -4.86 0.70 N 43 3 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.92 121.90 -4.98 0.70 N 44 3 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.34 117.70 3.64 0.50 N 45 3 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.30 118.60 -5.30 0.60 N 46 4 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.37 117.70 3.67 0.50 N 47 4 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.32 118.60 -4.28 0.60 N 48 4 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.24 121.90 -4.66 0.70 N 49 4 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.89 121.90 -5.01 0.70 N 50 4 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.98 117.00 -3.02 0.50 N 51 4 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.36 117.70 3.66 0.50 N 52 4 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.29 118.60 -5.31 0.60 N 53 4 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.33 117.70 3.63 0.50 N 54 4 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.89 118.60 -3.71 0.60 N 55 4 N1 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 122.57 118.90 3.67 0.60 N 56 4 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 116.69 121.90 -5.21 0.70 N 57 4 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.79 121.90 -5.11 0.70 N 58 4 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.64 117.00 -3.36 0.50 N 59 4 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.16 117.70 3.46 0.50 N 60 4 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.41 118.60 -5.19 0.60 N 61 5 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.09 117.70 3.39 0.50 N 62 5 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.42 118.60 -4.18 0.60 N 63 5 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.07 121.90 -4.83 0.70 N 64 5 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 117.19 121.90 -4.71 0.70 N 65 5 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.62 117.00 -3.38 0.50 N 66 5 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.35 117.70 3.65 0.50 N 67 5 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 112.94 118.60 -5.66 0.60 N 68 5 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.84 117.00 -3.16 0.50 N 69 5 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.50 117.70 3.80 0.50 N 70 5 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.05 118.60 -4.55 0.60 N 71 5 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 117.05 121.90 -4.85 0.70 N 72 5 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.59 121.90 -5.31 0.70 N 73 5 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.77 117.00 -3.23 0.50 N 74 5 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.52 117.70 3.82 0.50 N 75 5 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.10 118.60 -5.50 0.60 N 76 6 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.97 117.00 -3.03 0.50 N 77 6 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.48 117.70 3.78 0.50 N 78 6 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.37 118.60 -4.23 0.60 N 79 6 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.35 121.90 -4.55 0.70 N 80 6 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.84 121.90 -5.06 0.70 N 81 6 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.81 117.00 -3.19 0.50 N 82 6 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.12 117.70 3.42 0.50 N 83 6 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.24 118.60 -5.36 0.60 N 84 6 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.95 117.00 -3.05 0.50 N 85 6 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.31 117.70 3.61 0.50 N 86 6 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.42 118.60 -4.18 0.60 N 87 6 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 116.94 121.90 -4.96 0.70 N 88 6 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 117.02 121.90 -4.88 0.70 N 89 6 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.58 117.00 -3.42 0.50 N 90 6 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.39 117.70 3.69 0.50 N 91 6 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.13 118.60 -5.47 0.60 N 92 7 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.35 117.70 3.65 0.50 N 93 7 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.09 118.60 -4.51 0.60 N 94 7 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.15 121.90 -4.75 0.70 N 95 7 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.79 121.90 -5.11 0.70 N 96 7 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.97 117.00 -3.03 0.50 N 97 7 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.10 117.70 3.40 0.50 N 98 7 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.54 118.60 -5.06 0.60 N 99 7 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.32 117.70 3.62 0.50 N 100 7 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.00 118.60 -4.60 0.60 N 101 7 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 117.36 121.90 -4.54 0.70 N 102 7 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 117.15 121.90 -4.75 0.70 N 103 7 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.58 117.00 -3.42 0.50 N 104 7 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.28 117.70 3.58 0.50 N 105 7 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.16 118.60 -5.44 0.60 N 106 8 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.10 117.70 3.40 0.50 N 107 8 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 113.68 118.60 -4.92 0.60 N 108 8 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 116.89 121.90 -5.01 0.70 N 109 8 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.78 121.90 -5.12 0.70 N 110 8 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.91 117.00 -3.09 0.50 N 111 8 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.48 117.70 3.78 0.50 N 112 8 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.07 118.60 -5.53 0.60 N 113 8 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.85 117.00 -3.15 0.50 N 114 8 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.40 117.70 3.70 0.50 N 115 8 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 114.66 118.60 -3.94 0.60 N 116 8 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 116.75 121.90 -5.15 0.70 N 117 8 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.99 121.90 -4.91 0.70 N 118 8 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.91 117.00 -3.09 0.50 N 119 8 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.38 117.70 3.68 0.50 N 120 8 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.25 118.60 -5.35 0.60 N 121 9 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.25 117.70 3.55 0.50 N 122 9 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.28 118.60 -4.32 0.60 N 123 9 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 116.67 121.90 -5.23 0.70 N 124 9 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.91 121.90 -4.99 0.70 N 125 9 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.68 117.00 -3.32 0.50 N 126 9 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.61 117.70 3.91 0.50 N 127 9 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.08 118.60 -5.52 0.60 N 128 9 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.84 117.00 -3.16 0.50 N 129 9 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.48 117.70 3.78 0.50 N 130 9 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.77 118.60 -4.83 0.60 N 131 9 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 117.10 121.90 -4.80 0.70 N 132 9 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.83 121.90 -5.07 0.70 N 133 9 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.85 117.00 -3.15 0.50 N 134 9 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.25 117.70 3.55 0.50 N 135 9 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.17 118.60 -5.43 0.60 N 136 10 C4 A A 4 ? ? C5 A A 4 ? ? C6 A A 4 ? ? 113.97 117.00 -3.03 0.50 N 137 10 C5 A A 4 ? ? C6 A A 4 ? ? N1 A A 4 ? ? 121.16 117.70 3.46 0.50 N 138 10 N1 A A 4 ? ? C6 A A 4 ? ? N6 A A 4 ? ? 114.45 118.60 -4.15 0.60 N 139 10 N3 A C 7 ? ? C2 A C 7 ? ? O2 A C 7 ? ? 117.09 121.90 -4.81 0.70 N 140 10 "O4'" A C 8 ? ? "C1'" A C 8 ? ? N1 A C 8 ? ? 112.79 108.50 4.29 0.70 N 141 10 N3 A C 8 ? ? C2 A C 8 ? ? O2 A C 8 ? ? 116.89 121.90 -5.01 0.70 N 142 10 C4 A A 9 ? ? C5 A A 9 ? ? C6 A A 9 ? ? 113.96 117.00 -3.04 0.50 N 143 10 C5 A A 9 ? ? C6 A A 9 ? ? N1 A A 9 ? ? 121.25 117.70 3.55 0.50 N 144 10 N1 A A 9 ? ? C6 A A 9 ? ? N6 A A 9 ? ? 113.36 118.60 -5.24 0.60 N 145 10 C4 B A 13 ? ? C5 B A 13 ? ? C6 B A 13 ? ? 113.98 117.00 -3.02 0.50 N 146 10 C5 B A 13 ? ? C6 B A 13 ? ? N1 B A 13 ? ? 121.29 117.70 3.59 0.50 N 147 10 N1 B A 13 ? ? C6 B A 13 ? ? N6 B A 13 ? ? 113.96 118.60 -4.64 0.60 N 148 10 N3 B C 16 ? ? C2 B C 16 ? ? O2 B C 16 ? ? 117.30 121.90 -4.60 0.70 N 149 10 N3 B C 17 ? ? C2 B C 17 ? ? O2 B C 17 ? ? 116.95 121.90 -4.95 0.70 N 150 10 C4 B A 18 ? ? C5 B A 18 ? ? C6 B A 18 ? ? 113.94 117.00 -3.06 0.50 N 151 10 C5 B A 18 ? ? C6 B A 18 ? ? N1 B A 18 ? ? 121.22 117.70 3.52 0.50 N 152 10 N1 B A 18 ? ? C6 B A 18 ? ? N6 B A 18 ? ? 113.54 118.60 -5.06 0.60 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 8 _pdbx_validate_planes.auth_comp_id G _pdbx_validate_planes.auth_asym_id B _pdbx_validate_planes.auth_seq_id 11 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.058 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2KY2 'double helix' 2KY2 'a-form double helix' 2KY2 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 8 1_555 -0.598 -0.166 -0.212 -10.430 -12.341 -0.404 1 A_G1:C17_B A 1 ? B 17 ? 19 1 1 A G 2 1_555 B C 7 1_555 -0.376 -0.068 -0.118 -13.661 -14.050 0.895 2 A_G2:C16_B A 2 ? B 16 ? 19 1 1 A U 3 1_555 B G 6 1_555 2.323 -0.324 0.233 -8.276 -5.656 1.242 3 A_U3:G15_B A 3 ? B 15 ? 28 1 1 A A 4 1_555 B G 5 1_555 -0.041 1.624 -0.259 -2.933 -6.014 -17.122 4 A_A4:G14_B A 4 ? B 14 ? 8 1 1 A G 5 1_555 B A 4 1_555 -0.026 1.664 -0.162 -1.574 -2.858 -18.740 5 A_G5:A13_B A 5 ? B 13 ? 8 1 1 A G 6 1_555 B U 3 1_555 -2.377 -0.417 0.226 9.661 -5.867 -2.587 6 A_G6:U12_B A 6 ? B 12 ? 28 1 1 A C 7 1_555 B G 2 1_555 0.401 -0.071 -0.103 13.715 -13.597 0.428 7 A_C7:G11_B A 7 ? B 11 ? 19 1 1 A C 8 1_555 B G 1 1_555 0.672 -0.169 -0.154 8.929 -12.951 0.738 8 A_C8:G10_B A 8 ? B 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 8 1_555 A G 2 1_555 B C 7 1_555 0.184 -1.916 3.385 0.286 7.598 32.089 -4.632 -0.277 2.870 13.509 -0.508 32.954 1 AA_G1G2:C16C17_BB A 1 ? B 17 ? A 2 ? B 16 ? 1 A G 2 1_555 B C 7 1_555 A U 3 1_555 B G 6 1_555 0.417 -1.753 3.237 0.834 2.843 40.762 -2.814 -0.509 3.120 4.076 -1.196 40.865 2 AA_G2U3:G15C16_BB A 2 ? B 16 ? A 3 ? B 15 ? 1 A U 3 1_555 B G 6 1_555 A A 4 1_555 B G 5 1_555 -1.232 -2.333 3.244 8.592 3.972 20.667 -7.151 5.782 2.091 10.395 -22.489 22.710 3 AA_U3A4:G14G15_BB A 3 ? B 15 ? A 4 ? B 14 ? 1 A A 4 1_555 B G 5 1_555 A G 5 1_555 B A 4 1_555 0.107 -3.193 3.535 0.704 5.117 13.240 -17.178 0.156 2.156 21.170 -2.913 14.208 4 AA_A4G5:A13G14_BB A 4 ? B 14 ? A 5 ? B 13 ? 1 A G 5 1_555 B A 4 1_555 A G 6 1_555 B U 3 1_555 1.500 -2.698 3.205 -5.629 2.526 16.935 -9.848 -7.534 2.174 8.232 18.339 18.016 5 AA_G5G6:U12A13_BB A 5 ? B 13 ? A 6 ? B 12 ? 1 A G 6 1_555 B U 3 1_555 A C 7 1_555 B G 2 1_555 -0.363 -1.726 3.285 -1.158 1.664 42.079 -2.572 0.387 3.226 2.315 1.612 42.125 6 AA_G6C7:G11U12_BB A 6 ? B 12 ? A 7 ? B 11 ? 1 A C 7 1_555 B G 2 1_555 A C 8 1_555 B G 1 1_555 0.030 -1.960 3.401 -0.542 6.662 32.343 -4.558 -0.143 2.949 11.802 0.961 33.009 7 AA_C7C8:G10G11_BB A 7 ? B 11 ? A 8 ? B 10 ? #