HEADER CELL ADHESION 14-MAY-10 2KY5 TITLE SOLUTION STRUCTURE OF THE PECAM-1 CYTOPLASMIC TAIL WITH DPC COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET ENDOTHELIAL CELL ADHESION MOLECULE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 685-737; COMPND 5 SYNONYM: PECAM-1, ENDOCAM, GPIIA', PECA1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PECAM-1, PECAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21[PREP4]; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE30T KEYWDS PECAM-1, ITIM, SIGNAL TRANSDUCTION, MEMBRANE ASSOCIATION, STRUCTURAL KEYWDS 2 GENOMICS, PROTEIN STRUCTURE INITIATIVE, PSI, CENTER FOR EUKARYOTIC KEYWDS 3 STRUCTURAL GENOMICS, CELL ADHESION, CESG EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.L.LYTLE,F.C.PETERSON,B.F.VOLKMAN,C.PADDOCK,D.K.NEWMAN,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 5 14-JUN-23 2KY5 1 REMARK REVDAT 4 05-FEB-20 2KY5 1 REMARK SEQADV REVDAT 3 22-JUN-11 2KY5 1 JRNL REVDAT 2 27-APR-11 2KY5 1 JRNL REVDAT 1 26-MAY-10 2KY5 0 JRNL AUTH C.PADDOCK,B.L.LYTLE,F.C.PETERSON,T.HOLYST,P.J.NEWMAN, JRNL AUTH 2 B.F.VOLKMAN,D.K.NEWMAN JRNL TITL RESIDUES WITHIN A LIPID-ASSOCIATED SEGMENT OF THE PECAM-1 JRNL TITL 2 CYTOPLASMIC DOMAIN ARE SUSCEPTIBLE TO INDUCIBLE, SEQUENTIAL JRNL TITL 3 PHOSPHORYLATION. JRNL REF BLOOD V. 117 6012 2011 JRNL REFN ISSN 0006-4971 JRNL PMID 21464369 JRNL DOI 10.1182/BLOOD-2010-11-317867 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XPLOR-NIH 2.9.3 REMARK 3 AUTHORS : REMARK 3 SCHWIETERS,C.D.,KUSZEWSKI,J.J.,TJANDRA,N.,CLORE,G.M. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON A TOTAL OF 164 REMARK 3 NOE CONSTRAINTS ( 81 INTRA, 42 SEQUENTIAL, 41 MEDIUM AND 0 LONG REMARK 3 RANGE CONSTRAINTS) AND 33 PHI AND PSI DIHEDRAL ANGLE REMARK 3 CONSTRAINTS.FINAL STRUCTURES WERE OBTAINED BY MOLECULAR DYNAMICS REMARK 3 IN EXPLICIT SOLVENT. REMARK 4 REMARK 4 2KY5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101719. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 52 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PECAM-1, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 600 MM [U-100% 2H] DPC, 95% H2O, REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY (AROMATIC) REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, NMRPIPE 2009, XEASY REMARK 210 1.3, GARANT 2.1, CYANA 2.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: AUTOMATED METHODS WERE USED FOR BACKBONE CHEMICAL SHIFT REMARK 210 ASSIGNMENT AND ITERATIVE NOE REFINEMENT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 657 REMARK 465 SER A 658 REMARK 465 SER A 659 REMARK 465 ASP A 660 REMARK 465 VAL A 661 REMARK 465 GLN A 662 REMARK 465 TYR A 663 REMARK 465 THR A 664 REMARK 465 GLU A 665 REMARK 465 VAL A 666 REMARK 465 GLN A 667 REMARK 465 VAL A 668 REMARK 465 SER A 669 REMARK 465 SER A 670 REMARK 465 ALA A 671 REMARK 465 GLU A 672 REMARK 465 SER A 673 REMARK 465 HIS A 674 REMARK 465 LYS A 675 REMARK 465 ASP A 676 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 679 80.96 64.18 REMARK 500 1 SER A 707 -174.23 65.11 REMARK 500 1 LEU A 708 -70.47 -121.51 REMARK 500 1 ASP A 709 95.61 -179.27 REMARK 500 2 LYS A 679 88.96 61.23 REMARK 500 2 LYS A 680 -77.34 62.15 REMARK 500 2 ASP A 681 128.00 173.89 REMARK 500 2 GLU A 705 97.26 67.24 REMARK 500 2 SER A 707 145.08 -172.64 REMARK 500 3 LEU A 708 175.96 68.52 REMARK 500 3 ASP A 709 93.59 62.60 REMARK 500 4 LYS A 680 77.34 63.91 REMARK 500 4 ASP A 681 -156.81 -105.38 REMARK 500 4 TYR A 701 99.25 -62.26 REMARK 500 4 ASP A 709 -176.66 68.68 REMARK 500 5 LYS A 679 -176.40 65.02 REMARK 500 5 ASP A 681 -51.55 -159.48 REMARK 500 5 TYR A 701 83.34 -66.01 REMARK 500 5 SER A 702 -65.87 176.19 REMARK 500 6 LYS A 680 -54.31 -168.69 REMARK 500 7 LYS A 680 95.22 62.42 REMARK 500 7 TYR A 701 94.88 -68.24 REMARK 500 7 GLU A 705 -74.15 -83.41 REMARK 500 8 LYS A 680 -67.48 -164.68 REMARK 500 8 ASP A 681 -81.99 -158.69 REMARK 500 8 TYR A 701 90.63 -66.95 REMARK 500 8 SER A 702 105.68 66.20 REMARK 500 8 THR A 704 -84.56 -84.65 REMARK 500 9 LYS A 680 77.02 -176.61 REMARK 500 9 ASP A 681 -165.78 -109.32 REMARK 500 9 THR A 704 177.59 60.31 REMARK 500 9 GLU A 705 167.30 70.18 REMARK 500 10 LYS A 680 -68.39 -109.94 REMARK 500 10 ASP A 681 94.76 50.39 REMARK 500 10 ARG A 703 109.37 63.92 REMARK 500 10 GLU A 705 99.43 -58.30 REMARK 500 10 ASP A 709 110.65 -162.55 REMARK 500 11 ARG A 703 109.14 69.42 REMARK 500 11 SER A 707 101.76 65.04 REMARK 500 12 ARG A 703 -84.22 -105.74 REMARK 500 12 THR A 704 85.92 -152.73 REMARK 500 13 GLU A 705 83.95 63.82 REMARK 500 13 ASP A 709 104.07 66.68 REMARK 500 14 ASP A 681 -152.41 -94.11 REMARK 500 14 LEU A 708 82.33 62.71 REMARK 500 15 TYR A 701 103.12 -58.93 REMARK 500 15 ARG A 703 82.76 66.86 REMARK 500 15 ASP A 709 87.30 59.89 REMARK 500 16 LYS A 679 -61.22 -108.71 REMARK 500 16 ASP A 681 -77.84 33.17 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16935 RELATED DB: BMRB DBREF 2KY5 A 659 711 UNP P16284 PECA1_HUMAN 686 738 SEQADV 2KY5 GLY A 657 UNP P16284 EXPRESSION TAG SEQADV 2KY5 SER A 658 UNP P16284 EXPRESSION TAG SEQRES 1 A 55 GLY SER SER ASP VAL GLN TYR THR GLU VAL GLN VAL SER SEQRES 2 A 55 SER ALA GLU SER HIS LYS ASP LEU GLY LYS LYS ASP THR SEQRES 3 A 55 GLU THR VAL TYR SER GLU VAL ARG LYS ALA VAL PRO ASP SEQRES 4 A 55 ALA VAL GLU SER ARG TYR SER ARG THR GLU GLY SER LEU SEQRES 5 A 55 ASP GLY THR HELIX 1 1 ASP A 681 SER A 702 1 22 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1