HEADER TOXIN 21-MAY-10 2KYB TITLE SOLUTION STRUCTURE OF CPR82G FROM CLOSTRIDIUM PERFRINGENS. NORTH EAST TITLE 2 STRUCTURAL GENOMICS CONSORTIUM TARGET CPR82G COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSYL-GLYCOPROTEIN ENDO-BETA-N-ACETYLGLUCOSAMINIDASE COMPND 3 DOMAIN PROTEIN, POSSIBLE ENTEROTOXIN; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SEQUENCE DATABASE RESIDUES 300-358; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 195103; SOURCE 4 STRAIN: ATCC 13124, NCTC 8237, TYPE A; SOURCE 5 GENE: ENTD, CPF_1439; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, TOXIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR C.K.MOBLEY,H.LEE,D.LEE,C.CICCOSANTI,H.JANJUA,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERRETT,G.T.MONTELIONE,J.H.PRESTEGARD,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 2 05-FEB-20 2KYB 1 REMARK SEQADV REVDAT 1 09-JUN-10 2KYB 0 JRNL AUTH C.K.MOBLEY,H.LEE,G.T.MONTELIONE,J.H.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF CPR82G JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1.5, X-PLOR NIH 2.18 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KYB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-10. REMARK 100 THE DEPOSITION ID IS D_1000101725. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 205 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.01 MM [U-100% 13C; U-100% 15N] REMARK 210 CPR82G-1, 0.02 % SODIUM AZIDE-2, REMARK 210 100 MM DTT-3, 5 MM CALCIUM REMARK 210 CHLORIDE-4, 100 MM SODIUM REMARK 210 CHLORIDE-5, 20 MM MES-6, 95% H2O/ REMARK 210 5% D2O; 0.98 MM U-5% 13C; U-100% REMARK 210 15N CPR82G-7, 0.02 % SODIUM REMARK 210 AZIDE-8, 100 MM DTT-9, 5 MM REMARK 210 CALCIUM CHLORIDE-10, 100 MM REMARK 210 SODIUM CHLORIDE-11, 20 MM MES-12, REMARK 210 95% H2O/5% D2O; 0.67 MM [U-100% REMARK 210 13C; U-100% 15N] CPR82G-13, REMARK 210 0.016 % SODIUM AZIDE-14, 81.73 REMARK 210 MM DTT-15, 4.09 MM CALCIUM REMARK 210 CHLORIDE-16, 81.73 MM SODIUM REMARK 210 CHLORIDE-17, 16.35 MM MES-18, 4 % REMARK 210 C12E5 PEG-19, 1.25 % HEXANOL-20, REMARK 210 82.88% H2O/17.12% D2O; 0.92 MM REMARK 210 CPR82G-21, 0.018 % SODIUM AZIDE- REMARK 210 22, 91.67 MM DTT-23, 4.58 MM REMARK 210 CALCIUM CHLORIDE-24, 91.67 MM REMARK 210 SODIUM CHLORIDE-25, 18.32 MM MES- REMARK 210 26, 7 % POSITIVELY CHARGED REMARK 210 COMPRESSED POLYACRYLAMIDE GEL-27, REMARK 210 91.3% H2O/8.7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D C(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D CBCA(CO)NH; 2D REMARK 210 1H-13C HSQC; 2D 1H-15N HSQC; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 H(CCO)NH; 3D HNCACB; 2D 1H-13C REMARK 210 HSQC CT 28MS DELAY; 2D 1H-13C REMARK 210 HSQC CT 42MS DELAY; 2D 1H-13C REMARK 210 HSQC CT 56MS DELAY; NH-J- REMARK 210 MODULATION; 3D HNCO; HBCBCGCDHDA; REMARK 210 HBCBCGCDCEHEA; 2D 1H-13C HSQC REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEWJ 8.0.B17, NMRPIPE, REMARK 210 NMRDRAW, PSVS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 7 109.18 -55.77 REMARK 500 1 VAL A 8 72.28 -66.40 REMARK 500 1 SER A 9 -104.59 -85.39 REMARK 500 1 SER A 10 -28.02 -157.29 REMARK 500 1 ALA A 18 40.40 -72.97 REMARK 500 1 LYS A 23 -177.20 71.14 REMARK 500 1 ILE A 25 -22.43 -148.82 REMARK 500 1 ILE A 36 145.66 -34.49 REMARK 500 1 VAL A 37 67.54 -154.30 REMARK 500 1 ALA A 42 38.87 -77.47 REMARK 500 2 ASN A 7 83.42 -56.31 REMARK 500 2 VAL A 8 -126.25 47.71 REMARK 500 2 SER A 9 136.69 57.78 REMARK 500 2 SER A 17 -173.17 -176.28 REMARK 500 2 ALA A 18 17.24 -61.81 REMARK 500 2 LYS A 23 -163.27 66.05 REMARK 500 3 ASN A 7 -109.27 8.72 REMARK 500 3 VAL A 8 -52.25 -143.02 REMARK 500 3 SER A 9 77.75 -170.14 REMARK 500 3 SER A 17 38.85 175.86 REMARK 500 3 ALA A 18 45.39 76.07 REMARK 500 3 LYS A 23 -170.58 80.43 REMARK 500 3 ILE A 36 171.57 -50.53 REMARK 500 3 VAL A 37 -92.42 -139.29 REMARK 500 3 ALA A 42 30.41 76.46 REMARK 500 3 LYS A 49 27.47 47.49 REMARK 500 4 SER A 10 -171.80 69.54 REMARK 500 4 SER A 22 -173.82 -58.90 REMARK 500 4 ILE A 36 146.94 -34.47 REMARK 500 4 LYS A 49 10.86 56.69 REMARK 500 5 SER A 9 105.97 -52.08 REMARK 500 5 SER A 10 -122.38 60.42 REMARK 500 5 ILE A 36 160.06 -43.02 REMARK 500 5 VAL A 37 -92.50 -123.34 REMARK 500 5 ALA A 42 30.37 -84.90 REMARK 500 5 LYS A 49 16.49 59.18 REMARK 500 6 LYS A 2 -79.80 -63.84 REMARK 500 6 SER A 9 -78.88 -168.59 REMARK 500 6 SER A 10 -133.74 -131.15 REMARK 500 6 SER A 17 -177.95 175.80 REMARK 500 6 ALA A 18 42.97 -97.11 REMARK 500 6 ASN A 31 16.30 164.61 REMARK 500 6 VAL A 37 -97.86 -127.40 REMARK 500 6 GLU A 47 58.73 -95.75 REMARK 500 7 ASN A 7 102.28 -59.63 REMARK 500 7 SER A 17 -178.13 -176.74 REMARK 500 7 LYS A 23 109.90 -163.24 REMARK 500 7 VAL A 24 135.92 62.06 REMARK 500 7 ILE A 25 -17.14 -152.57 REMARK 500 7 ILE A 36 147.17 -36.75 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16944 RELATED DB: BMRB REMARK 900 RELATED ID: CPR82G RELATED DB: TARGETDB DBREF 2KYB A 2 59 UNP Q0TR56 Q0TR56_CLOP1 300 357 SEQADV 2KYB MET A 1 UNP Q0TR56 EXPRESSION TAG SEQADV 2KYB ILE A 60 UNP Q0TR56 EXPRESSION TAG SEQRES 1 A 60 MET LYS THR GLY ILE VAL ASN VAL SER SER SER LEU ASN SEQRES 2 A 60 VAL ARG SER SER ALA SER THR SER SER LYS VAL ILE GLY SEQRES 3 A 60 SER LEU SER GLY ASN THR LYS VAL THR ILE VAL GLY GLU SEQRES 4 A 60 GLU GLY ALA PHE TYR LYS ILE GLU TYR LYS GLY SER HIS SEQRES 5 A 60 GLY TYR VAL ALA LYS GLU TYR ILE HELIX 1 1 SER A 19 LYS A 23 5 5 SHEET 1 A 2 GLY A 4 ILE A 5 0 SHEET 2 A 2 LYS A 33 VAL A 34 -1 O VAL A 34 N GLY A 4 SHEET 1 B 2 ASN A 13 VAL A 14 0 SHEET 2 B 2 GLY A 26 SER A 27 -1 O GLY A 26 N VAL A 14 SHEET 1 C 3 GLU A 39 GLU A 40 0 SHEET 2 C 3 PHE A 43 LYS A 45 -1 O PHE A 43 N GLU A 40 SHEET 3 C 3 TYR A 54 ALA A 56 -1 O VAL A 55 N TYR A 44 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1