HEADER PROTEIN BINDING 25-MAY-10 2KYG TITLE STRUCTURE OF THE AML1-ETO NERVY DOMAIN - PKA(RIIA) COMPLEX AND ITS TITLE 2 CONTRIBUTION TO AML1-ETO ACTIVITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE II-ALPHA REGULATORY COMPND 3 SUBUNIT; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN CBFA2T1; COMPND 8 CHAIN: C; COMPND 9 SYNONYM: PROTEIN MTG8, PROTEIN ETO, EIGHT TWENTY ONE PROTEIN, CYCLIN- COMPND 10 D-RELATED PROTEIN, ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 2; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PRKAR2A, PKR2, PRKAR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS PARALLEL 2; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 GENE: RUNX1T1, AML1T1, CBFA2T1, CDR, ETO, MTG8, ZMYND2; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET-32A KEYWDS PROTEIN/PROTEIN, HOMODIMER BOUND TO MONOMER, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR T.A.CORPORA,T.CIERPECKI,J.BUSHWELLER REVDAT 3 14-JUN-23 2KYG 1 REMARK REVDAT 2 05-FEB-20 2KYG 1 REMARK SEQADV REVDAT 1 20-OCT-10 2KYG 0 JRNL AUTH T.CORPORA,L.ROUDAIA,Z.M.OO,W.CHEN,E.MANUYLOVA,X.CAI, JRNL AUTH 2 M.J.CHEN,T.CIERPICKI,N.A.SPECK,J.H.BUSHWELLER JRNL TITL STRUCTURE OF THE AML1-ETO NHR3-PKA(RIIALPHA) COMPLEX AND ITS JRNL TITL 2 CONTRIBUTION TO AML1-ETO ACTIVITY. JRNL REF J.MOL.BIOL. V. 402 560 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 20708017 JRNL DOI 10.1016/J.JMB.2010.08.007 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, A. ET AL. (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KYG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101730. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : 0.0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM [U-99% 13C; U-99% 15N] REMARK 210 NHR3, 2 MM [U-99% 13C; U-99% 15N] REMARK 210 PKA(RIIA), 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCO; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D HNHA; 3D H(CCO)NH; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRDRAW, SPARKY, TALOS, PROCHECK REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING A COMBINATION OF NOE REMARK 210 AND RESIDUAL DIPOLAR COUPLING DATA. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A -6 -173.35 -58.97 REMARK 500 1 MET A -5 -45.18 -139.89 REMARK 500 1 ILE A 3 -54.66 -125.20 REMARK 500 1 GLN A 4 119.01 38.98 REMARK 500 1 ILE A 5 104.65 -46.26 REMARK 500 1 GLN A 24 71.24 56.31 REMARK 500 1 ALA B -6 -55.80 -169.35 REMARK 500 1 MET B -5 30.98 -99.12 REMARK 500 1 SER B -3 98.82 -171.10 REMARK 500 1 MET B -2 34.53 -143.87 REMARK 500 1 SER B -1 -30.87 86.02 REMARK 500 1 ILE B 3 -87.09 83.02 REMARK 500 1 GLN B 4 69.71 180.00 REMARK 500 1 GLN B 24 85.98 57.70 REMARK 500 1 ARG B 43 -168.68 -121.50 REMARK 500 1 MET C 579 -59.27 -169.51 REMARK 500 1 ALA C 580 32.96 -169.28 REMARK 500 1 SER C 584 112.35 -171.35 REMARK 500 1 SER C 586 -164.77 59.43 REMARK 500 1 TYR C 588 -169.71 -175.94 REMARK 500 1 VAL C 589 118.87 74.70 REMARK 500 1 PRO C 590 -156.77 -53.13 REMARK 500 1 GLU C 591 -78.87 -91.06 REMARK 500 2 ALA A -6 138.07 -170.74 REMARK 500 2 MET A -5 30.86 71.73 REMARK 500 2 HIS A 2 113.33 -162.98 REMARK 500 2 ILE A 3 -70.13 -149.65 REMARK 500 2 GLN A 4 105.44 67.49 REMARK 500 2 ILE A 5 102.39 -43.21 REMARK 500 2 PRO A 6 108.25 -48.60 REMARK 500 2 PRO A 7 150.87 -48.99 REMARK 500 2 GLN A 24 73.57 57.06 REMARK 500 2 SER B -3 142.11 -170.20 REMARK 500 2 HIS B 2 129.14 176.83 REMARK 500 2 GLN B 4 88.13 -165.97 REMARK 500 2 ILE B 5 100.96 -17.15 REMARK 500 2 GLN B 24 79.34 61.65 REMARK 500 2 ARG B 43 43.89 27.24 REMARK 500 2 MET C 579 -66.43 -144.73 REMARK 500 2 ALA C 580 44.02 -160.87 REMARK 500 2 SER C 584 128.92 -171.82 REMARK 500 2 ALA C 585 -73.02 -76.32 REMARK 500 2 TYR C 588 77.24 46.87 REMARK 500 2 VAL C 589 148.13 77.01 REMARK 500 2 PRO C 590 36.74 -77.52 REMARK 500 2 GLU C 591 -74.73 62.42 REMARK 500 2 LYS C 614 63.92 -158.26 REMARK 500 3 ALA A -6 -85.29 57.07 REMARK 500 3 SER A -1 -83.75 -147.27 REMARK 500 3 HIS A 2 -40.74 170.81 REMARK 500 REMARK 500 THIS ENTRY HAS 290 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16954 RELATED DB: BMRB DBREF 2KYG A -2 44 UNP P13861 KAP2_HUMAN 1 45 DBREF 2KYG B -2 44 UNP P13861 KAP2_HUMAN 1 45 DBREF 2KYG C 585 615 UNP Q06455 MTG8_HUMAN 437 467 SEQADV 2KYG GLY A -7 UNP P13861 EXPRESSION TAG SEQADV 2KYG ALA A -6 UNP P13861 EXPRESSION TAG SEQADV 2KYG MET A -5 UNP P13861 EXPRESSION TAG SEQADV 2KYG GLY A -4 UNP P13861 EXPRESSION TAG SEQADV 2KYG SER A -3 UNP P13861 EXPRESSION TAG SEQADV 2KYG GLY B -7 UNP P13861 EXPRESSION TAG SEQADV 2KYG ALA B -6 UNP P13861 EXPRESSION TAG SEQADV 2KYG MET B -5 UNP P13861 EXPRESSION TAG SEQADV 2KYG GLY B -4 UNP P13861 EXPRESSION TAG SEQADV 2KYG SER B -3 UNP P13861 EXPRESSION TAG SEQADV 2KYG ALA C 578 UNP Q06455 EXPRESSION TAG SEQADV 2KYG MET C 579 UNP Q06455 EXPRESSION TAG SEQADV 2KYG ALA C 580 UNP Q06455 EXPRESSION TAG SEQADV 2KYG ASP C 581 UNP Q06455 EXPRESSION TAG SEQADV 2KYG ILE C 582 UNP Q06455 EXPRESSION TAG SEQADV 2KYG GLY C 583 UNP Q06455 EXPRESSION TAG SEQADV 2KYG SER C 584 UNP Q06455 EXPRESSION TAG SEQRES 1 A 50 GLY ALA MET GLY SER MET SER HIS ILE GLN ILE PRO PRO SEQRES 2 A 50 GLY LEU THR GLU LEU LEU GLN GLY TYR THR VAL GLU VAL SEQRES 3 A 50 LEU ARG GLN GLN PRO PRO ASP LEU VAL GLU PHE ALA VAL SEQRES 4 A 50 GLU TYR PHE THR ARG LEU ARG GLU ALA ARG ALA SEQRES 1 B 50 GLY ALA MET GLY SER MET SER HIS ILE GLN ILE PRO PRO SEQRES 2 B 50 GLY LEU THR GLU LEU LEU GLN GLY TYR THR VAL GLU VAL SEQRES 3 B 50 LEU ARG GLN GLN PRO PRO ASP LEU VAL GLU PHE ALA VAL SEQRES 4 B 50 GLU TYR PHE THR ARG LEU ARG GLU ALA ARG ALA SEQRES 1 C 38 ALA MET ALA ASP ILE GLY SER ALA SER GLY TYR VAL PRO SEQRES 2 C 38 GLU GLU ILE TRP LYS LYS ALA GLU GLU ALA VAL ASN GLU SEQRES 3 C 38 VAL LYS ARG GLN ALA MET THR GLU LEU GLN LYS ALA HELIX 1 1 GLY A 8 GLN A 24 1 17 HELIX 2 2 ASP A 27 ALA A 42 1 16 HELIX 3 3 GLY B 8 GLN B 24 1 17 HELIX 4 4 ASP B 27 ARG B 43 1 17 HELIX 5 5 GLU C 591 LYS C 614 1 24 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1