HEADER SIGNALING PROTEIN 02-JUN-10 2KYM TITLE SOLUTION STRUCTURE OF THE BEM1P SH3-CI DOMAIN FROM L.ELONGISPORUS IN TITLE 2 COMPLEX WITH STE20P PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BUD EMERGENCE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3-CI DOMAIN, UNP RESIDUES 2-117; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PEPTIDE FORM SERINE/THREONINE-PROTEIN KINASE STE20; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: PRR, UNP RESIDUES 468-483; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LODDEROMYCES ELONGISPORUS; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 379508; SOURCE 5 STRAIN: NRRL YB-4239; SOURCE 6 GENE: LELG_04233; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 13 ORGANISM_COMMON: YEAST; SOURCE 14 ORGANISM_TAXID: 4932 KEYWDS SH3 DOMAIN, BEM1P, SH3-CI, STE20P PRR, CDC42P-INTERACTING, SCAFFOLD, KEYWDS 2 SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.GORELIK,R.MUHANDIRAM,A.R.DAVIDSON REVDAT 2 05-FEB-20 2KYM 1 REMARK SEQADV REVDAT 1 23-JUN-10 2KYM 0 JRNL AUTH M.GORELIK,R.MUHANDIRAM,W.YIN,A.R.DAVIDSON JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF AN UNUSUAL SH3 JRNL TITL 2 DOMAIN FROM THE FUNGAL SCAFFOLD PROTEIN, BEM1P JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY, CYANA 2.1 REMARK 3 AUTHORS : GODDARD (SPARKY), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KYM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101736. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 BEM1 SH3-CI PROTEIN, 1.5 MM REMARK 210 STE20 PEPTIDE, 0.5 MM PMSF, 0.5 REMARK 210 MM EDTA, 0.05 % SODIUM AZIDE, 50 REMARK 210 MM HEPES, 100 MM SODIUM CHLORIDE, REMARK 210 1 MM DTT, 95% H2O/5% D2O; 0.7 REMARK 210 MM [U-99% 13C; U-99% 15N] BEM1 REMARK 210 SH3-CI PROTEIN, 1.5 MM STE20 REMARK 210 PEPTIDE, 0.5 MM PMSF, 0.5 MM REMARK 210 EDTA, 0.05 % SODIUM AZIDE, 50 MM REMARK 210 HEPES, 100 MM SODIUM CHLORIDE, 1 REMARK 210 MM DTT, 100% D2O; 0.5 MM [U-99% REMARK 210 13C; U-99% 15N] BEM1 SH3-CI REMARK 210 PROTEIN, 0.5 MM STE20 PEPTIDE, REMARK 210 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.05 % SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O; 0.5 MM [U- REMARK 210 99% 13C; U-99% 15N] BEM1 SH3-CI REMARK 210 PROTEIN, 0.5 MM STE20 PEPTIDE, REMARK 210 100 MM SODIUM CHLORIDE, 50 MM REMARK 210 SODIUM PHOSPHATE, 0.05 % SODIUM REMARK 210 AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CO)CA; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 2D 1H-13C HSQC; REMARK 210 3D HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY; REMARK 210 15N C13 FILTERED 2D 1H-1H TOCSY; REMARK 210 15N C13 FILTERED 2D 1H-1H NOESY; REMARK 210 15N C13 FILTERED 2D 1H-1H COSY; REMARK 210 13C HALF-FILTERED 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 1 79.31 -69.70 REMARK 500 1 ASP A 62 75.69 -152.19 REMARK 500 1 GLN A 105 -178.83 -173.96 REMARK 500 1 PRO B -5 78.46 -69.74 REMARK 500 1 PRO B 3 87.82 -69.80 REMARK 500 2 PRO A 1 77.46 -69.72 REMARK 500 2 GLN A 105 164.92 -48.96 REMARK 500 2 HIS A 110 99.64 -58.79 REMARK 500 2 PHE B -7 -75.00 -75.21 REMARK 500 2 ILE B -6 77.08 51.81 REMARK 500 2 PRO B -5 92.36 -69.72 REMARK 500 2 ALA B -1 80.56 64.30 REMARK 500 3 PRO A 1 95.43 -69.79 REMARK 500 3 ARG A 43B -170.77 -66.30 REMARK 500 3 ASP A 62 75.84 -152.58 REMARK 500 3 GLN A 105 -169.32 -71.46 REMARK 500 3 PHE B -7 -71.33 -68.63 REMARK 500 3 ILE B -6 74.29 51.07 REMARK 500 3 ALA B -1 80.93 57.79 REMARK 500 3 PRO B 3 96.75 -69.82 REMARK 500 4 GLN A 105 167.71 179.00 REMARK 500 4 PHE B -7 -72.00 -80.21 REMARK 500 4 ILE B -6 77.60 51.94 REMARK 500 4 PRO B -5 92.64 -69.72 REMARK 500 4 ALA B -1 108.99 -51.22 REMARK 500 5 ASN A 43A -73.84 -53.35 REMARK 500 5 LEU A 44 -74.75 -84.90 REMARK 500 5 ASP A 62 82.10 -161.45 REMARK 500 5 GLU A 101 179.81 -57.01 REMARK 500 5 HIS A 110 140.45 -175.08 REMARK 500 5 LEU A 116 -67.86 -127.06 REMARK 500 5 LYS B -8 -43.29 -133.24 REMARK 500 5 PHE B -7 -74.81 -55.43 REMARK 500 5 ILE B -6 81.00 51.83 REMARK 500 5 PRO B -5 81.43 -69.77 REMARK 500 5 SER B -4 37.27 -97.21 REMARK 500 5 PRO B -2 99.53 -69.79 REMARK 500 5 ALA B -1 108.96 -51.13 REMARK 500 6 LEU A 44 -73.03 -74.29 REMARK 500 6 ASP A 62 74.13 -151.94 REMARK 500 6 ILE A 104 -70.64 -51.48 REMARK 500 6 HIS A 110 -176.87 -60.25 REMARK 500 6 PHE B -7 -74.76 -72.04 REMARK 500 6 ILE B -6 77.97 51.31 REMARK 500 6 PRO B -5 90.96 -69.80 REMARK 500 6 ALA B -1 108.90 -51.05 REMARK 500 7 PRO A 1 78.75 -69.79 REMARK 500 7 ARG A 43B -169.43 -61.05 REMARK 500 7 ASP A 62 75.96 -155.31 REMARK 500 7 GLU A 101 174.91 -53.86 REMARK 500 REMARK 500 THIS ENTRY HAS 165 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16970 RELATED DB: BMRB DBREF 2KYM A 1 115 UNP A5E3P5 A5E3P5_LODEL 2 117 DBREF 2KYM B -9 6 UNP Q03497 STE20_YEAST 468 483 SEQADV 2KYM MET A -2 UNP A5E3P5 EXPRESSION TAG SEQADV 2KYM ALA A -1 UNP A5E3P5 EXPRESSION TAG SEQADV 2KYM LEU A 116 UNP A5E3P5 EXPRESSION TAG SEQADV 2KYM GLU A 117 UNP A5E3P5 EXPRESSION TAG SEQRES 1 A 120 MET ALA PRO LEU PHE ALA VAL THR LEU TYR GLU PHE LYS SEQRES 2 A 120 ALA GLU ARG ASP ASP GLU LEU ASP VAL SER PRO GLY GLU SEQRES 3 A 120 ASN LEU SER ILE CYS ALA HIS TYR ASP TYR GLU TRP PHE SEQRES 4 A 120 ILE ALA LYS PRO ILE ASN ARG LEU GLY GLY PRO GLY LEU SEQRES 5 A 120 VAL PRO VAL SER TYR VAL ARG ILE ILE ASP LEU MET ASP SEQRES 6 A 120 PRO ALA LYS TYR ALA SER VAL ASP THR TYR ASP ARG GLU SEQRES 7 A 120 GLN VAL MET LYS ILE ILE ASP GLU PHE LYS ILE PRO THR SEQRES 8 A 120 VAL GLU GLN TRP LYS ASP GLN THR ARG ARG TYR LYS GLU SEQRES 9 A 120 SER SER ILE GLN ILE GLY ASN GLY HIS GLY GLN SER GLN SEQRES 10 A 120 GLY LEU GLU SEQRES 1 B 16 GLY LYS PHE ILE PRO SER ARG PRO ALA PRO LYS PRO PRO SEQRES 2 B 16 SER SER ALA HELIX 1 1 ASP A 73 PHE A 84 1 12 HELIX 2 2 THR A 88 GLU A 101 1 14 SHEET 1 A 5 VAL A 50 PRO A 51 0 SHEET 2 A 5 TRP A 36 PRO A 41 -1 N PHE A 37 O VAL A 50 SHEET 3 A 5 ASN A 25 TYR A 32 -1 N ALA A 30 O ILE A 38 SHEET 4 A 5 PHE A 3 THR A 6 -1 N ALA A 4 O LEU A 26 SHEET 5 A 5 VAL A 55 ILE A 58 -1 O ARG A 56 N VAL A 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1