HEADER CELL ADHESION 09-JUN-10 2KYW TITLE SOLUTION NMR STRUCTURE OF A DOMAIN OF ADHESION EXOPROTEIN FROM TITLE 2 PEDIOCOCCUS PENTOSACEUS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET PTR41O COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADHESION EXOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1287-1365; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PEDIOCOCCUS PENTOSACEUS; SOURCE 3 ORGANISM_TAXID: 278197; SOURCE 4 STRAIN: ATCC 25745; SOURCE 5 GENE: PEPE_0118; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS STRUCTURAL GENOMICS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 GFT, PSI-2, PROTEIN STRUCTURE INITIATIVE, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR Y.HE,A.ELETSKY,J.L.MILLS,H.WANG,C.CICCOSANTI,H.JANJUA,T.B.ACTON, AUTHOR 2 R.XIAO,J.K.EVERETT,H.-W.LEE,J.H.PRESTEGARD,G.T.MONTELIONE, AUTHOR 3 T.SZYPERSKI,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KYW 1 REMARK REVDAT 2 05-FEB-20 2KYW 1 REMARK SEQADV REVDAT 1 04-AUG-10 2KYW 0 JRNL AUTH Y.HE,A.ELETSKY,J.L.MILLS,H.WANG,C.CICCOSANTI,H.JANJUA, JRNL AUTH 2 T.B.ACTON,R.XIAO,J.K.EVERETT,H.-W.LEE,J.H.PRESTEGARD, JRNL AUTH 3 G.T.MONTELIONE,T.SZYPERSKI JRNL TITL SOLUTION NMR STRUCTURE OF A DOMAIN OF ADHESION EXOPROTEIN JRNL TITL 2 FROM PEDIOCOCCUS PENTOSACEUS, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET PTR41O JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, MOLMOL REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA), REMARK 3 KORADI, BILLETER AND WUTHRICH (MOLMOL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINATION WAS PERFORMED REMARK 3 ITERATIVELY WITH CYANA V3.0 USING NOE-BASED CONSTRAINTS, PHI AND REMARK 3 PSI DIHEDRAL ANGLE CONSTRAINTS FROM TALOS+, AND RDC CONSTRAINTS. REMARK 3 THE 20 CONFORMERS OUT OF 100 WITH THE LOWEST TARGET FUNCTION REMARK 3 WERE FURTHER REFINED BY SIMULATED ANNEALING IN EXPLICIT WATER REMARK 3 BATH USING THE PROGRAM CNS WITH PARAM19 FORCE FIELD REMARK 4 REMARK 4 2KYW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101746. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 117.5 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% 15N] REMARK 210 PTR41O-1, 100 MM SODIUM CHLORIDE- REMARK 210 2, 5 MM CALCIUM CHLORIDE-3, 10 REMARK 210 MM DTT-4, 20 MM MES-5, 0.02 % REMARK 210 NAN3-6, 50 UM DSS-7, 90% H2O/10% REMARK 210 D2O; 1.2 MM [U-5% 13C; U-100% REMARK 210 15N] PTR41O-8, 100 MM SODIUM REMARK 210 CHLORIDE-9, 5 MM CALCIUM REMARK 210 CHLORIDE-10, 10 MM DTT-11, 20 MM REMARK 210 MES-12, 0.02 % NAN3-13, 50 UM REMARK 210 DSS-14, 90% H2O/10% D2O; 0.66 MM REMARK 210 [U-5% 13C; U-100% 15N] PTR41O-15, REMARK 210 66 MM SODIUM CHLORIDE-16, 3.3 REMARK 210 MM CALCIUM CHLORIDE-17, 6.6 MM REMARK 210 DTT-18, 13.2 MM MES-19, 0.0132 % REMARK 210 NAN3-20, 33 UM DSS-21, 4 % POLY REMARK 210 ETHYLENE GLYCOL-22, 83% H2O/17% REMARK 210 D2O; 0.66 MM [U-5% 13C; U-100% REMARK 210 15N] PTR41O-23, 66 MM SODIUM REMARK 210 CHLORIDE-24, 3.3 MM CALCIUM REMARK 210 CHLORIDE-25, 6.6 MM DTT-26, 13.2 REMARK 210 MM MES-27, 0.0132 % NAN3-28, 33 REMARK 210 UM DSS-29, 13.25 MG/ML PF1 PHAGE- REMARK 210 30, 83% H2O/17% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C CT REMARK 210 -HSQC ALI; 2D 1H-13C CT-HSQC ARO; REMARK 210 3D HNCO; 3D HN(CA)CO; GFT REMARK 210 CBCA(CO)NH; GFT HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY ALI; 13C/15N-NOESY; 2D REMARK 210 1H-13C CT-HSQC (METHYL); 2D J- REMARK 210 MODULATION 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.2.1, AUTOASSIGN, NMRPIPE REMARK 210 2007.030.16.06, XEASY, TOPSPIN, REMARK 210 VNMRJ 2.1B, CARA 1.8.4, TALOS+, REMARK 210 PSVS 1.3, NMRDRAW 3.0, PROSA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 69 96.89 56.42 REMARK 500 1 ASP A 70 82.39 -67.81 REMARK 500 1 ASN A 71 97.07 -69.26 REMARK 500 1 HIS A 83 84.83 62.82 REMARK 500 3 VAL A 46 -61.75 -108.69 REMARK 500 3 LEU A 80 83.61 -68.76 REMARK 500 3 GLU A 81 -80.09 30.24 REMARK 500 4 VAL A 46 -60.37 -107.09 REMARK 500 4 HIS A 83 94.98 -40.71 REMARK 500 5 ALA A 66 3.64 -69.62 REMARK 500 5 ASP A 67 45.17 -91.36 REMARK 500 6 ASP A 2 85.69 -166.77 REMARK 500 6 VAL A 46 -65.71 -100.91 REMARK 500 6 GLU A 81 85.17 50.26 REMARK 500 6 HIS A 82 -40.76 72.82 REMARK 500 7 ASP A 2 97.92 -168.46 REMARK 500 7 VAL A 46 -62.72 -102.48 REMARK 500 7 HIS A 82 85.15 -64.15 REMARK 500 8 HIS A 86 89.84 29.36 REMARK 500 9 LEU A 80 34.46 -83.87 REMARK 500 10 ASP A 68 76.36 65.21 REMARK 500 10 SER A 69 7.79 -152.18 REMARK 500 11 VAL A 46 -60.84 -101.77 REMARK 500 11 HIS A 86 74.13 47.92 REMARK 500 12 VAL A 46 -65.16 -99.21 REMARK 500 12 ALA A 66 32.67 -81.99 REMARK 500 13 LYS A 14 50.38 -118.53 REMARK 500 13 ASP A 68 29.18 -79.14 REMARK 500 13 HIS A 83 -76.07 43.25 REMARK 500 15 HIS A 82 104.70 65.15 REMARK 500 15 HIS A 86 172.58 53.69 REMARK 500 16 ASP A 70 -7.65 -34.12 REMARK 500 16 ASN A 71 99.86 -69.78 REMARK 500 16 HIS A 84 39.92 -91.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: PTR41O RELATED DB: TARGETDB REMARK 900 RELATED ID: 16988 RELATED DB: BMRB DBREF 2KYW A 1 79 UNP Q03HU7 Q03HU7_PEDPA 1287 1365 SEQADV 2KYW LEU A 80 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW GLU A 81 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW HIS A 82 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW HIS A 83 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW HIS A 84 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW HIS A 85 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW HIS A 86 UNP Q03HU7 EXPRESSION TAG SEQADV 2KYW HIS A 87 UNP Q03HU7 EXPRESSION TAG SEQRES 1 A 87 MET ASP GLU ASP ALA THR ILE THR TYR VAL ASP ASP ASP SEQRES 2 A 87 LYS GLY GLY ALA GLN VAL GLY ASP ILE VAL THR VAL THR SEQRES 3 A 87 GLY LYS THR ASP ASP SER THR THR TYR THR VAL THR ILE SEQRES 4 A 87 PRO ASP GLY TYR GLU TYR VAL GLY THR ASP GLY GLY VAL SEQRES 5 A 87 VAL SER SER ASP GLY LYS THR VAL THR ILE THR PHE ALA SEQRES 6 A 87 ALA ASP ASP SER ASP ASN VAL VAL ILE HIS LEU LYS HIS SEQRES 7 A 87 GLY LEU GLU HIS HIS HIS HIS HIS HIS SHEET 1 A 4 GLN A 18 GLY A 27 0 SHEET 2 A 4 GLU A 3 ASP A 11 -1 N ILE A 7 O VAL A 23 SHEET 3 A 4 VAL A 72 HIS A 78 1 O ILE A 74 N VAL A 10 SHEET 4 A 4 TYR A 43 ASP A 49 -1 N VAL A 46 O HIS A 75 SHEET 1 B 3 SER A 32 THR A 36 0 SHEET 2 B 3 THR A 59 THR A 63 -1 O VAL A 60 N TYR A 35 SHEET 3 B 3 VAL A 52 VAL A 53 -1 N VAL A 52 O THR A 61 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1