HEADER RIBOSOMAL PROTEIN 16-JUN-10 2KZF TITLE SOLUTION NMR STRUCTURE OF THE THERMOTOGA MARITIMA PROTEIN TM0855 A TITLE 2 PUTATIVE RIBOSOME BINDING FACTOR A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBOSOME-BINDING FACTOR A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-105; COMPND 5 SYNONYM: RBFA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: RBFA, TM_0855; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET25B KEYWDS JCSG, JOINT CENTER STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, PSI, RIBOSOMAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR P.SERRANO,K.JAUDZEMS,R.HORST,I.A.WILSON,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 3 20-MAR-13 2KZF 1 REMARK REVDAT 2 03-AUG-11 2KZF 1 VERSN KEYWDS REVDAT 1 11-AUG-10 2KZF 0 JRNL AUTH P.SERRANO,K.JAUDZEMS,R.HORST,I.A.WILSON,K.WUTHRICH JRNL TITL SOLUTION NMR STRUCTURE OF THE THERMOTOGA MARITIMA PROTEIN JRNL TITL 2 TM0855 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 3.0, OPAL OPALP REMARK 3 AUTHORS : G NTERT P. (CYANA), LUGINBUHL, GUNTERT, BILLETER REMARK 3 AND WUTHRICH (OPAL) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-10. REMARK 100 THE RCSB ID CODE IS RCSB101765. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.12 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2 MM TM0855, 5 MM SODIUM REMARK 210 AZIDE, 20 MM SODIUM PHOSPHATE, 50 REMARK 210 MM SODIUM CHLORIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-13C NOESY (ALI); 3D 1H-13C REMARK 210 NOESY (ARO); 3D 1H-15N NOESY; 4D REMARK 210 APSY-HACANH; 5D APSY-HACACONH; 5D REMARK 210 APSY-CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 TYR A 53 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 2 TYR A 88 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 3 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 4 TYR A 6 CB - CG - CD1 ANGL. DEV. = -6.0 DEGREES REMARK 500 7 TYR A 88 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 8 ARG A 63 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 8 TYR A 88 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 9 VAL A 54 CA - CB - CG1 ANGL. DEV. = 9.4 DEGREES REMARK 500 10 VAL A 54 CA - CB - CG1 ANGL. DEV. = 12.3 DEGREES REMARK 500 12 TYR A 6 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 13 TYR A 6 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 15 VAL A 54 CA - CB - CG1 ANGL. DEV. = 9.7 DEGREES REMARK 500 18 VAL A 41 CA - CB - CG2 ANGL. DEV. = 10.9 DEGREES REMARK 500 18 VAL A 52 CA - CB - CG2 ANGL. DEV. = 9.4 DEGREES REMARK 500 18 TYR A 88 CB - CG - CD1 ANGL. DEV. = -5.3 DEGREES REMARK 500 19 ARG A 78 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 20 VAL A 54 CA - CB - CG1 ANGL. DEV. = 13.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 -63.06 -135.57 REMARK 500 1 LYS A 8 -76.09 -107.93 REMARK 500 1 ARG A 27 -51.41 66.87 REMARK 500 1 ASP A 28 166.71 63.80 REMARK 500 1 ARG A 30 83.63 -162.78 REMARK 500 1 SER A 39 -66.41 -104.88 REMARK 500 1 LYS A 47 19.24 52.50 REMARK 500 1 TYR A 88 -74.89 -58.46 REMARK 500 1 ILE A 93 92.84 -69.15 REMARK 500 1 ASP A 98 78.00 45.73 REMARK 500 1 ALA A 103 -41.83 -169.32 REMARK 500 1 VAL A 105 -74.34 -139.16 REMARK 500 2 MET A 2 71.39 53.85 REMARK 500 2 ASN A 3 162.40 61.85 REMARK 500 2 LYS A 32 75.49 -67.04 REMARK 500 2 SER A 55 50.70 -91.29 REMARK 500 2 ALA A 73 3.60 -68.42 REMARK 500 2 TYR A 88 -69.48 -90.52 REMARK 500 2 LYS A 99 -42.74 -145.30 REMARK 500 2 SER A 104 57.03 -154.06 REMARK 500 3 MET A 2 80.42 51.96 REMARK 500 3 ASN A 3 145.66 71.99 REMARK 500 3 ALA A 5 144.39 62.33 REMARK 500 3 ARG A 7 -58.00 -138.88 REMARK 500 3 ARG A 30 -58.65 -125.09 REMARK 500 3 TYR A 88 -85.05 -65.75 REMARK 500 3 GLU A 97 54.44 -107.12 REMARK 500 3 GLU A 102 -60.59 -155.80 REMARK 500 3 SER A 104 -71.24 -84.45 REMARK 500 4 ALA A 5 -169.25 54.36 REMARK 500 4 LEU A 26 91.90 -60.83 REMARK 500 4 ASP A 28 157.36 65.49 REMARK 500 4 ARG A 30 82.61 -161.75 REMARK 500 4 SER A 39 -64.04 -125.61 REMARK 500 4 TYR A 88 -73.95 67.66 REMARK 500 4 GLU A 97 38.51 -82.20 REMARK 500 4 ASP A 98 14.98 52.78 REMARK 500 5 ALA A 5 -86.20 -155.96 REMARK 500 5 TYR A 6 -86.03 -143.18 REMARK 500 5 ARG A 27 -71.71 -45.50 REMARK 500 5 ASP A 28 84.92 43.35 REMARK 500 5 LYS A 32 96.14 -64.23 REMARK 500 5 ARG A 86 11.06 58.47 REMARK 500 5 TYR A 88 -63.85 63.81 REMARK 500 5 GLU A 97 30.89 -83.95 REMARK 500 5 ASP A 98 86.05 51.74 REMARK 500 5 LYS A 99 -43.82 73.43 REMARK 500 5 ALA A 103 76.48 -159.18 REMARK 500 6 MET A 2 -85.33 -93.36 REMARK 500 6 ALA A 5 179.98 59.88 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 48 0.11 SIDE CHAIN REMARK 500 1 TYR A 49 0.12 SIDE CHAIN REMARK 500 2 ARG A 27 0.08 SIDE CHAIN REMARK 500 2 TYR A 88 0.10 SIDE CHAIN REMARK 500 2 TYR A 96 0.09 SIDE CHAIN REMARK 500 3 ARG A 40 0.09 SIDE CHAIN REMARK 500 3 ARG A 48 0.08 SIDE CHAIN REMARK 500 3 TYR A 49 0.07 SIDE CHAIN REMARK 500 3 ARG A 63 0.08 SIDE CHAIN REMARK 500 4 ARG A 48 0.09 SIDE CHAIN REMARK 500 4 ARG A 63 0.09 SIDE CHAIN REMARK 500 4 ARG A 72 0.09 SIDE CHAIN REMARK 500 4 TYR A 88 0.09 SIDE CHAIN REMARK 500 4 ARG A 94 0.20 SIDE CHAIN REMARK 500 6 TYR A 53 0.10 SIDE CHAIN REMARK 500 6 ARG A 72 0.08 SIDE CHAIN REMARK 500 7 ARG A 40 0.11 SIDE CHAIN REMARK 500 7 ARG A 78 0.08 SIDE CHAIN REMARK 500 8 ARG A 40 0.08 SIDE CHAIN REMARK 500 8 ARG A 63 0.08 SIDE CHAIN REMARK 500 9 TYR A 49 0.07 SIDE CHAIN REMARK 500 9 ARG A 94 0.10 SIDE CHAIN REMARK 500 10 TYR A 96 0.07 SIDE CHAIN REMARK 500 12 ARG A 40 0.09 SIDE CHAIN REMARK 500 12 TYR A 88 0.08 SIDE CHAIN REMARK 500 13 ARG A 30 0.10 SIDE CHAIN REMARK 500 13 ARG A 63 0.18 SIDE CHAIN REMARK 500 13 ARG A 78 0.09 SIDE CHAIN REMARK 500 14 ARG A 78 0.13 SIDE CHAIN REMARK 500 14 ARG A 94 0.08 SIDE CHAIN REMARK 500 15 TYR A 49 0.09 SIDE CHAIN REMARK 500 15 ARG A 63 0.09 SIDE CHAIN REMARK 500 16 TYR A 53 0.09 SIDE CHAIN REMARK 500 17 TYR A 53 0.13 SIDE CHAIN REMARK 500 18 ARG A 27 0.08 SIDE CHAIN REMARK 500 18 ARG A 30 0.10 SIDE CHAIN REMARK 500 20 ARG A 27 0.11 SIDE CHAIN REMARK 500 20 ARG A 40 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 356556 RELATED DB: TARGETDB DBREF 2KZF A 2 106 UNP Q9WZV9 RBFA_THEMA 1 105 SEQADV 2KZF GLY A 1 UNP Q9WZV9 EXPRESSION TAG SEQRES 1 A 106 GLY MET ASN PRO ALA TYR ARG LYS ALA MET LEU GLU SER SEQRES 2 A 106 GLU ILE GLN LYS LEU LEU MET GLU ALA LEU GLN GLN LEU SEQRES 3 A 106 ARG ASP PRO ARG LEU LYS LYS ASP PHE VAL THR PHE SER SEQRES 4 A 106 ARG VAL GLU LEU SER LYS ASP LYS ARG TYR ALA ASP VAL SEQRES 5 A 106 TYR VAL SER PHE LEU GLY THR PRO GLU GLU ARG LYS GLU SEQRES 6 A 106 THR VAL GLU ILE LEU ASN ARG ALA LYS GLY PHE PHE ARG SEQRES 7 A 106 THR PHE ILE ALA LYS ASN LEU ARG LEU TYR VAL ALA PRO SEQRES 8 A 106 GLU ILE ARG PHE TYR GLU ASP LYS GLY ILE GLU ALA SER SEQRES 9 A 106 VAL LYS HELIX 1 1 LYS A 8 GLN A 25 1 18 HELIX 2 2 LYS A 32 VAL A 36 5 5 HELIX 3 3 THR A 59 LEU A 85 1 27 SHEET 1 A 3 PHE A 38 LEU A 43 0 SHEET 2 A 3 TYR A 49 VAL A 54 -1 O ASP A 51 N GLU A 42 SHEET 3 A 3 GLU A 92 TYR A 96 1 O TYR A 96 N VAL A 54 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1