HEADER PROTEIN BINDING 18-JUN-10 2KZJ TITLE SOLUTION STRUCTURE OF THE ZHER2 AFFIBODY (ALTERNATIVE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENGINEERED PROTEIN, ZHER2 AFFIBODY; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: PAY442; SOURCE 7 OTHER_DETAILS: PET DERIVED, T7 PROMOTER KEYWDS ENGINEERED PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 23 AUTHOR T.HARD REVDAT 3 01-MAY-24 2KZJ 1 REMARK REVDAT 2 08-SEP-10 2KZJ 1 JRNL REVDAT 1 04-AUG-10 2KZJ 0 JRNL AUTH C.EIGENBROT,M.ULTSCH,A.DUBNOVITSKY,L.ABRAHMSEN,T.HARD JRNL TITL STRUCTURAL BASIS FOR HIGH-AFFINITY HER2 RECEPTOR BINDING BY JRNL TITL 2 AN ENGINEERED PROTEIN. JRNL REF PROC.NATL.ACAD.SCI.USA V. 107 15039 2010 JRNL REFN ISSN 0027-8424 JRNL PMID 20696930 JRNL DOI 10.1073/PNAS.1005025107 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2KZJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101769. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.18 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM ZHER2 AFFIBODY-1, 95% REMARK 210 H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, CCPNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 23 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-23 REMARK 465 RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 LEU A -1 REMARK 465 GLN A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 3 -61.48 -90.43 REMARK 500 1 ASP A 37 84.53 -158.46 REMARK 500 2 ASN A 3 -61.22 -90.38 REMARK 500 2 PHE A 5 47.16 -90.37 REMARK 500 2 ASP A 37 82.90 -161.98 REMARK 500 3 ASP A 2 -78.27 -67.06 REMARK 500 3 ASN A 3 -61.01 -90.28 REMARK 500 4 ASP A 2 -75.37 -74.13 REMARK 500 4 ASN A 3 -61.30 -90.12 REMARK 500 4 LYS A 4 147.97 -171.90 REMARK 500 4 ASP A 37 88.41 -151.51 REMARK 500 5 ASP A 2 -74.96 -73.74 REMARK 500 5 ASN A 3 -61.28 -90.44 REMARK 500 6 ASP A 2 -74.06 -63.64 REMARK 500 8 ASP A 37 105.35 -165.91 REMARK 500 9 ASP A 2 -74.25 -63.46 REMARK 500 9 LYS A 4 -158.23 -73.24 REMARK 500 11 ASP A 2 -75.08 -72.89 REMARK 500 11 ASN A 3 -61.44 -90.65 REMARK 500 11 PHE A 5 45.79 -83.34 REMARK 500 11 ASP A 37 88.63 -152.54 REMARK 500 12 ASP A 2 -72.88 -71.56 REMARK 500 12 ASN A 3 -61.49 -90.56 REMARK 500 12 LYS A 4 149.94 -170.33 REMARK 500 13 ASP A 2 -73.19 -69.29 REMARK 500 13 ASN A 3 -61.23 -90.02 REMARK 500 14 ASP A 2 -75.12 -64.21 REMARK 500 15 ASP A 2 -71.06 -64.46 REMARK 500 15 ASN A 3 -61.61 -90.06 REMARK 500 15 LYS A 4 148.62 -174.25 REMARK 500 15 PHE A 5 48.25 -83.54 REMARK 500 16 PHE A 5 -85.03 -62.26 REMARK 500 17 ASP A 2 -74.10 -71.63 REMARK 500 17 ASN A 3 -61.29 -90.31 REMARK 500 18 ASP A 2 -79.78 -68.86 REMARK 500 18 LYS A 4 146.36 -172.11 REMARK 500 19 ASP A 37 104.62 -161.92 REMARK 500 20 ASP A 2 -72.32 -71.13 REMARK 500 20 ASN A 3 -61.50 -90.42 REMARK 500 20 LYS A 4 149.43 -171.25 REMARK 500 20 ASP A 37 82.92 -151.31 REMARK 500 21 ASN A 3 -60.55 -91.30 REMARK 500 21 LYS A 4 158.11 179.65 REMARK 500 21 PHE A 5 43.63 -84.97 REMARK 500 22 ASN A 6 -61.51 -91.74 REMARK 500 23 ASP A 2 -74.52 -73.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KZI RELATED DB: PDB DBREF 2KZJ A -11 58 PDB 2KZJ 2KZJ -11 58 SEQRES 1 A 70 MET GLY SER SER HIS HIS HIS HIS HIS HIS LEU GLN VAL SEQRES 2 A 70 ASP ASN LYS PHE ASN LYS GLU MET ARG ASN ALA TYR TRP SEQRES 3 A 70 GLU ILE ALA LEU LEU PRO ASN LEU ASN ASN GLN GLN LYS SEQRES 4 A 70 ARG ALA PHE ILE ARG SER LEU TYR ASP ASP PRO SER GLN SEQRES 5 A 70 SER ALA ASN LEU LEU ALA GLU ALA LYS LYS LEU ASN ASP SEQRES 6 A 70 ALA GLN ALA PRO LYS HELIX 1 1 PHE A 5 LEU A 19 1 15 HELIX 2 2 ASN A 23 ASP A 37 1 15 HELIX 3 3 GLN A 40 ALA A 56 1 17 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1