HEADER OXIDOREDUCTASE 18-JUN-10 2KZN TITLE SOLUTION NMR STRUCTURE OF PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSRB TITLE 2 FROM BACILLUS SUBTILIS, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET SR10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDE METHIONINE SULFOXIDE REDUCTASE MSRB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPTIDE-METHIONINE (R)-S-OXIDE REDUCTASE; COMPND 5 EC: 1.8.4.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: BSU21680, MSRB, YPPQ; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 14-15C KEYWDS OXIDOREDUCTASE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG), KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2 EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.ERTEKIN,M.MAGLAQUI,H.JANJUA,B.COOPER,C.CICCOSANTI,B.ROST,T.B.ACTON, AUTHOR 2 R.XIAO,J.K.EVERETT,J.PRESTEGARD,H.LEE,J.M.ARAMINI,P.ROSSI, AUTHOR 3 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 6 01-MAY-24 2KZN 1 REMARK SEQADV REVDAT 5 18-JUL-12 2KZN 1 JRNL REVDAT 4 27-JUN-12 2KZN 1 JRNL REVDAT 3 18-JAN-12 2KZN 1 JRNL VERSN REVDAT 2 11-AUG-10 2KZN 1 SPRSDE REVDAT 1 07-JUL-10 2KZN 0 SPRSDE 11-AUG-10 2KZN 1XM0 JRNL AUTH O.F.LANGE,P.ROSSI,N.G.SGOURAKIS,Y.SONG,H.W.LEE,J.M.ARAMINI, JRNL AUTH 2 A.ERTEKIN,R.XIAO,T.B.ACTON,G.T.MONTELIONE,D.BAKER JRNL TITL DETERMINATION OF SOLUTION STRUCTURES OF PROTEINS UP TO 40 JRNL TITL 2 KDA USING CS-ROSETTA WITH SPARSE NMR DATA FROM DEUTERATED JRNL TITL 3 SAMPLES. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 10873 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22733734 JRNL DOI 10.1073/PNAS.1203013109 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE DETERMINED BY SPARSE REMARK 3 CONSTRAINTS FROM UNIFORMLY DEUTERATED, METHYL BACK- REMARK 3 PROTONATED(ILE,VAL,LEU). NOESY ASSIGNMENTS BY CYANA-3.0 WITH REMARK 3 RDC. 20 OF 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH REMARK 3 CYANA-3.0. SELECTED MODELS ARE FURTHER REFINED USING CNS IN REMARK 3 EXPLICIT WATER SHELL AND RDC SAMPLE ALIGNED IN PHAGE (NILGES REMARK 3 PROTOCOL WITH PARAM19). ASSIGNMENT STATS (ALL RESIDUES INCLUDED): REMARK 3 BACKBONE 72.96%, SIDECHAIN 21.00%, AROMATIC (SC) 00.00%, REMARK 3 STEREOSPECIFIC VL METHYL ASSIGNMENT 100%, UNAMBIGUOUS SIDECHAIN REMARK 3 NH2 57.14%. STRUCTURE BASED ON 603 NOE, 235 DIHE, 85 RDC. MAX REMARK 3 NOE VIOLATION: 1.85 A; MAX DIHE VIOLATION: 20.7 DEG. 50 TOTAL REMARK 3 CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR (PSVS 1.3) REMARK 3 : ORDERED RESIDUES RANGES: 4-27, 31-33, 37-59, 64-80, 84-95, 98- REMARK 3 133, 134-141 FOR [S(PHI)+S(PSI)] > 1.8. SECONDARY STRUCTURE - REMARK 3 ALPHA HELICES: 5-22, 126-132, 134-141; BETA STRANDS: 49-53, 40- REMARK 3 44, 121-125, 66-67, 113-116, 100-103, 86-90, 77-81 RMSD(ANG): REMARK 3 BACKBONE 2.1, ALL -0.45/-1.46 (RAW/Z), PROCHECK (ALL): -0.38/- REMARK 3 2.25 (RAW/Z), MOLPROBITY CLASH: 18.61/-1.67 (RAW/Z). RDC REMARK 3 STATISTICS FROM CYANA-3.0. DA = -5.404 HZ, RHOM = 0.48; CORR. REMARK 3 COEFF: 0.919 +/- 0.012, Q-FACTOR: 25.162 +/- 1.869%. AFTER CNS REMARK 3 WATER REFINEMENT WITH RDC PALES COMPUTED CORR. COEFF: 0.976 AND REMARK 3 Q-FACTOR: 14.0%. REMARK 4 REMARK 4 2KZN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101772. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.8 MM [U-100% 13C; U-100% 15N; REMARK 210 U-100% 2H] SR10, 10 MM DTT, 0.02 REMARK 210 % SODIUM AZIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM SODIUM CHLORIDE, REMARK 210 1 X PROTEASE INHIBITOR, 20 MM REMARK 210 MES, 50 UM DSS, 90% H2O/10% D2O; REMARK 210 1.2 MM [U-5% 13C; U-100% 15N] REMARK 210 SR10, 10 MM DTT, 0.02 % SODIUM REMARK 210 AZIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 100 MM SODIUM CHLORIDE, 1 X REMARK 210 PROTEASE INHIBITOR, 20 MM MES, REMARK 210 50 UM DSS, 90% H2O/10% D2O; 1.2 REMARK 210 MM [U-5% 13C; U-100% 15N] SR10, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 5 MM CALCIUM CHLORIDE, 200 MM REMARK 210 SODIUM CHLORIDE, 1 X PROTEASE REMARK 210 INHIBITOR, 20 MM MES, 50 UM DSS, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D TRHNCACB 2H REMARK 210 DEC; 3D HN(CA)CO; 2D 1H-15N HSQC REMARK 210 - T1; 2D 1H-15N HSQC - T2; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 3D REMARK 210 (N15)HSQC-NOESY-(N15)HSQC; 3D REMARK 210 (C13)HSQC-NOESY-(C13)HSQC; 3D REMARK 210 (N15)HSQC-NOESY-(C13)HSQC; 3D REMARK 210 (C13)HSQC-NOESY-(N15)HSQC; 2D 1H- REMARK 210 15N TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, NMRPIPE, TOPSPIN, REMARK 210 SPARKY, TALOS+, PALES REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT SCATTERING REMARK 210 AND BY NMR.T1/T2(CPMG) (MS/MS) = 921/57 AT 800MHZ, TAUC = 9.3(NS) REMARK 210 . CONSISTENT WITH MOLECULAR WEIGHT. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 28 97.72 -49.39 REMARK 500 1 PHE A 29 -52.74 -147.60 REMARK 500 1 GLN A 30 82.01 -46.19 REMARK 500 1 HIS A 83 87.73 -153.04 REMARK 500 1 SER A 97 -4.27 -59.74 REMARK 500 1 LEU A 99 -75.04 -47.69 REMARK 500 1 TYR A 134 -37.06 -29.69 REMARK 500 1 ASN A 142 115.00 -162.64 REMARK 500 2 TRP A 34 -24.15 73.87 REMARK 500 2 HIS A 36 85.16 72.91 REMARK 500 2 LEU A 99 -75.79 -61.30 REMARK 500 2 ASN A 117 109.78 -58.38 REMARK 500 2 TYR A 134 36.53 -86.11 REMARK 500 3 ALA A 2 80.89 62.14 REMARK 500 3 PRO A 28 106.83 -48.43 REMARK 500 3 PHE A 29 -45.37 -147.58 REMARK 500 3 ASP A 35 -66.95 -124.91 REMARK 500 3 HIS A 36 -70.09 14.33 REMARK 500 3 SER A 47 -40.39 -136.24 REMARK 500 3 HIS A 83 30.54 -78.27 REMARK 500 3 LEU A 99 -81.46 -68.66 REMARK 500 3 TYR A 134 -31.20 63.62 REMARK 500 3 ASN A 142 79.51 -103.82 REMARK 500 4 PRO A 28 95.99 -68.79 REMARK 500 4 ASP A 35 44.46 -96.82 REMARK 500 4 SER A 47 -13.91 -143.16 REMARK 500 4 PHE A 52 -179.70 179.94 REMARK 500 4 SER A 60 74.03 -103.35 REMARK 500 4 PRO A 65 117.13 -39.96 REMARK 500 4 HIS A 83 31.59 -86.63 REMARK 500 4 LEU A 99 -79.58 -55.07 REMARK 500 4 TYR A 134 -29.95 -37.98 REMARK 500 4 TYR A 137 -61.56 -108.11 REMARK 500 4 ASN A 142 87.50 48.71 REMARK 500 5 PHE A 29 -41.55 76.43 REMARK 500 5 SER A 47 -20.18 -149.94 REMARK 500 5 ASP A 56 35.82 -150.92 REMARK 500 5 CYS A 62 26.76 -74.43 REMARK 500 5 THR A 81 16.41 -153.44 REMARK 500 5 HIS A 83 35.11 -88.41 REMARK 500 5 LEU A 99 -75.86 -66.93 REMARK 500 5 TYR A 134 -57.01 53.55 REMARK 500 6 PRO A 28 94.36 -54.21 REMARK 500 6 PHE A 29 -41.81 -154.01 REMARK 500 6 GLU A 38 -176.32 -64.50 REMARK 500 6 LEU A 99 -75.96 -57.39 REMARK 500 6 TYR A 134 -41.03 -14.89 REMARK 500 7 SER A 60 72.95 -109.79 REMARK 500 7 PRO A 65 116.71 -39.92 REMARK 500 7 ARG A 91 115.42 -161.54 REMARK 500 REMARK 500 THIS ENTRY HAS 148 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 97 HIS A 98 14 -149.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1XM0 RELATED DB: PDB REMARK 900 RELATED ID: 5619 RELATED DB: BMRB REMARK 900 RELATED ID: 17008 RELATED DB: BMRB REMARK 900 RELATED ID: SR10 RELATED DB: TARGETDB DBREF 2KZN A 1 143 UNP P54155 MSRB_BACSU 1 143 SEQADV 2KZN LEU A 144 UNP P54155 EXPRESSION TAG SEQADV 2KZN GLU A 145 UNP P54155 EXPRESSION TAG SEQADV 2KZN HIS A 146 UNP P54155 EXPRESSION TAG SEQADV 2KZN HIS A 147 UNP P54155 EXPRESSION TAG SEQADV 2KZN HIS A 148 UNP P54155 EXPRESSION TAG SEQADV 2KZN HIS A 149 UNP P54155 EXPRESSION TAG SEQADV 2KZN HIS A 150 UNP P54155 EXPRESSION TAG SEQADV 2KZN HIS A 151 UNP P54155 EXPRESSION TAG SEQRES 1 A 151 MET ALA TYR ASN LYS GLU GLU LYS ILE LYS SER LEU ASN SEQRES 2 A 151 ARG MET GLN TYR GLU VAL THR GLN ASN ASN GLY THR GLU SEQRES 3 A 151 PRO PRO PHE GLN ASN GLU TYR TRP ASP HIS LYS GLU GLU SEQRES 4 A 151 GLY LEU TYR VAL ASP ILE VAL SER GLY LYS PRO LEU PHE SEQRES 5 A 151 THR SER LYS ASP LYS PHE ASP SER GLN CYS GLY TRP PRO SEQRES 6 A 151 SER PHE THR LYS PRO ILE GLU GLU GLU VAL GLU GLU LYS SEQRES 7 A 151 LEU ASP THR SER HIS GLY MET ILE ARG THR GLU VAL ARG SEQRES 8 A 151 SER ARG THR ALA ASP SER HIS LEU GLY HIS VAL PHE ASN SEQRES 9 A 151 ASP GLY PRO GLY PRO ASN GLY LEU ARG TYR CYS ILE ASN SEQRES 10 A 151 SER ALA ALA LEU ARG PHE VAL PRO LYS HIS LYS LEU LYS SEQRES 11 A 151 GLU GLU GLY TYR GLU SER TYR LEU HIS LEU PHE ASN LYS SEQRES 12 A 151 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 4 ASN A 23 1 20 HELIX 2 2 LYS A 126 GLY A 133 1 8 HELIX 3 3 GLY A 133 ASN A 142 1 10 SHEET 1 A 3 PRO A 50 THR A 53 0 SHEET 2 A 3 GLY A 40 ASP A 44 -1 N TYR A 42 O PHE A 52 SHEET 3 A 3 LEU A 121 PRO A 125 -1 O VAL A 124 N LEU A 41 SHEET 1 B 5 SER A 66 PHE A 67 0 SHEET 2 B 5 ARG A 113 ILE A 116 -1 O TYR A 114 N PHE A 67 SHEET 3 B 5 GLY A 100 PHE A 103 -1 N HIS A 101 O CYS A 115 SHEET 4 B 5 ILE A 86 VAL A 90 -1 N THR A 88 O VAL A 102 SHEET 5 B 5 GLU A 77 THR A 81 -1 N ASP A 80 O ARG A 87 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1