HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-10 2KZV TITLE SOLUTION NMR STRUCTURE OF CV_0373(175-257) PROTEIN FROM TITLE 2 CHROMOBACTERIUM VIOLACEUM, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET CVR118A COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 175-257; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHROMOBACTERIUM VIOLACEUM; SOURCE 3 ORGANISM_TAXID: 536; SOURCE 4 GENE: CV_0373; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21-23C KEYWDS STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.A.RAMELOT,D.WANG,C.CICCOSANTI,L.MAO,H.JANJUA,T.B.ACTON, AUTHOR 2 R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 3 14-JUN-23 2KZV 1 REMARK REVDAT 2 05-FEB-20 2KZV 1 REMARK SEQADV REVDAT 1 25-AUG-10 2KZV 0 JRNL AUTH Y.YANG,T.A.RAMELOT,D.WANG,C.CICCOSANTI,L.MAO,H.JANJUA, JRNL AUTH 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF CV_0373(175-257) PROTEIN FROM JRNL TITL 2 CHROMOBACTERIUM VIOLACEUM, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET CVR118A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 2008, CNS 1.2, PSVS 1.4 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS), BHATTACHARYA AND MONTELIONE (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: XPLOR-NIH WITH HBDB REMARK 4 REMARK 4 2KZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-10. REMARK 100 THE DEPOSITION ID IS D_1000101780. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 CV_0373(175-257) PROTEIN FROM REMARK 210 CHROMOBACTERIUM VIOLACEUM, 20 MM REMARK 210 AMMONIUM ACETATE, 100 MM SODIUM REMARK 210 CHLORIDE 5 MM CALCIUM CHLORIDE, REMARK 210 10 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 90% H2O/10% D2O; 0.82 MM [U-5% REMARK 210 13C; U-100% 15N] CV_0373(175-257) REMARK 210 PROTEIN FROM CHROMOBACTERIUM REMARK 210 VIOLACEUM, 20 MM AMMONIUM REMARK 210 ACETATE, 100 MM SODIUM CHLORIDE, REMARK 210 5 MM CALCIUM CHLORIDE, 10 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 90% H2O/10% REMARK 210 D2O; 0.9 MM [U-100% 13C; U-100% REMARK 210 15N] CV_0373(175-257) PROTEIN REMARK 210 FROM CHROMOBACTERIUM VIOLACEUM, REMARK 210 20 MM AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC_CT; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D CBCA(CO)NH; 3D HN(CO) REMARK 210 CA; 3D HBHA(CO)NH; 3D H(CCO)NH; REMARK 210 3D C(CO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HCCH-COSY; 4D CC NOESY; 2D 1H- REMARK 210 15N HSQC_SWN150PPM REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.4, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.20, SPARKY 3.113, AUTOASSIGN REMARK 210 2.30, PDBSTAT 5.1, PINE SERVER REMARK 210 1.0, CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 9 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 14 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG A 69 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 4 -80.55 54.23 REMARK 500 1 GLU A 5 -72.44 60.90 REMARK 500 1 LYS A 6 108.51 54.12 REMARK 500 1 SER A 24 77.09 -179.78 REMARK 500 1 TRP A 26 -174.07 -54.70 REMARK 500 1 HIS A 87 20.31 -156.06 REMARK 500 1 HIS A 89 179.65 51.92 REMARK 500 1 HIS A 91 -79.06 -54.26 REMARK 500 2 HIS A 3 -48.62 -152.17 REMARK 500 2 ARG A 22 77.14 44.95 REMARK 500 2 ASP A 23 150.39 57.69 REMARK 500 2 SER A 24 157.93 57.98 REMARK 500 2 ASP A 40 73.13 -162.70 REMARK 500 2 ARG A 52 2.89 -67.88 REMARK 500 2 PHE A 62 20.42 -69.78 REMARK 500 2 ASP A 83 -26.65 -169.59 REMARK 500 2 LEU A 85 86.72 51.48 REMARK 500 2 GLU A 86 -73.02 -168.74 REMARK 500 2 HIS A 89 12.10 52.58 REMARK 500 3 LYS A 6 -48.59 -158.77 REMARK 500 3 HIS A 7 172.30 57.68 REMARK 500 3 ASP A 23 8.42 55.40 REMARK 500 3 ASP A 40 64.28 -153.56 REMARK 500 3 TRP A 48 24.56 -78.36 REMARK 500 3 GLU A 86 105.93 53.63 REMARK 500 3 HIS A 88 178.36 52.24 REMARK 500 4 HIS A 3 -61.07 -159.07 REMARK 500 4 LYS A 4 -73.10 59.16 REMARK 500 4 GLU A 5 -91.50 -62.50 REMARK 500 4 ALA A 21 2.82 -67.03 REMARK 500 4 ARG A 22 -146.34 61.19 REMARK 500 4 SER A 24 87.72 176.76 REMARK 500 4 TRP A 26 -174.35 -58.77 REMARK 500 4 ASP A 40 77.22 -153.76 REMARK 500 4 ARG A 52 2.75 -62.94 REMARK 500 4 ASP A 61 -65.29 57.85 REMARK 500 4 PHE A 62 19.07 -63.21 REMARK 500 4 SER A 72 28.94 -78.41 REMARK 500 4 LEU A 85 100.21 53.69 REMARK 500 4 HIS A 87 117.52 -167.15 REMARK 500 4 HIS A 91 -175.53 51.30 REMARK 500 5 PRO A 2 6.28 -64.57 REMARK 500 5 LYS A 4 37.99 -70.92 REMARK 500 5 GLU A 5 -79.10 -77.56 REMARK 500 5 LYS A 6 -110.81 50.58 REMARK 500 5 ARG A 22 -2.97 61.74 REMARK 500 5 ASP A 23 -101.41 -175.11 REMARK 500 5 SER A 24 91.96 -162.02 REMARK 500 5 TRP A 26 -178.44 -68.04 REMARK 500 5 ASP A 40 73.80 -162.81 REMARK 500 REMARK 500 THIS ENTRY HAS 235 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 22 0.16 SIDE CHAIN REMARK 500 1 ARG A 79 0.09 SIDE CHAIN REMARK 500 2 ARG A 22 0.11 SIDE CHAIN REMARK 500 3 ARG A 52 0.07 SIDE CHAIN REMARK 500 3 ARG A 69 0.14 SIDE CHAIN REMARK 500 4 ARG A 22 0.12 SIDE CHAIN REMARK 500 4 ARG A 69 0.16 SIDE CHAIN REMARK 500 5 ARG A 69 0.15 SIDE CHAIN REMARK 500 6 ARG A 69 0.08 SIDE CHAIN REMARK 500 7 ARG A 22 0.09 SIDE CHAIN REMARK 500 7 ARG A 52 0.09 SIDE CHAIN REMARK 500 7 ARG A 69 0.10 SIDE CHAIN REMARK 500 8 ARG A 22 0.12 SIDE CHAIN REMARK 500 8 ARG A 69 0.09 SIDE CHAIN REMARK 500 9 ARG A 69 0.10 SIDE CHAIN REMARK 500 10 ARG A 46 0.10 SIDE CHAIN REMARK 500 10 ARG A 69 0.15 SIDE CHAIN REMARK 500 11 ARG A 22 0.09 SIDE CHAIN REMARK 500 11 ARG A 52 0.11 SIDE CHAIN REMARK 500 11 ARG A 69 0.14 SIDE CHAIN REMARK 500 12 ARG A 22 0.16 SIDE CHAIN REMARK 500 12 ARG A 46 0.13 SIDE CHAIN REMARK 500 12 ARG A 69 0.13 SIDE CHAIN REMARK 500 12 ARG A 79 0.09 SIDE CHAIN REMARK 500 13 ARG A 46 0.11 SIDE CHAIN REMARK 500 13 ARG A 52 0.08 SIDE CHAIN REMARK 500 14 ARG A 22 0.14 SIDE CHAIN REMARK 500 14 ARG A 46 0.13 SIDE CHAIN REMARK 500 14 ARG A 69 0.20 SIDE CHAIN REMARK 500 15 ARG A 22 0.09 SIDE CHAIN REMARK 500 15 ARG A 46 0.12 SIDE CHAIN REMARK 500 15 ARG A 69 0.10 SIDE CHAIN REMARK 500 16 ARG A 22 0.16 SIDE CHAIN REMARK 500 16 ARG A 52 0.13 SIDE CHAIN REMARK 500 16 ARG A 69 0.23 SIDE CHAIN REMARK 500 16 ARG A 79 0.09 SIDE CHAIN REMARK 500 16 ARG A 81 0.09 SIDE CHAIN REMARK 500 17 ARG A 22 0.17 SIDE CHAIN REMARK 500 17 ARG A 52 0.09 SIDE CHAIN REMARK 500 17 ARG A 69 0.20 SIDE CHAIN REMARK 500 19 ARG A 46 0.13 SIDE CHAIN REMARK 500 19 ARG A 69 0.18 SIDE CHAIN REMARK 500 20 ARG A 22 0.09 SIDE CHAIN REMARK 500 20 ARG A 46 0.13 SIDE CHAIN REMARK 500 20 ARG A 69 0.13 SIDE CHAIN REMARK 500 20 ARG A 79 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17020 RELATED DB: BMRB REMARK 900 RELATED ID: CVR118A RELATED DB: TARGETDB DBREF 2KZV A 2 84 UNP Q7P141 Q7P141_CHRVO 175 257 SEQADV 2KZV MET A 1 UNP Q7P141 INITIATING METHIONINE SEQADV 2KZV LEU A 85 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV GLU A 86 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV HIS A 87 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV HIS A 88 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV HIS A 89 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV HIS A 90 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV HIS A 91 UNP Q7P141 EXPRESSION TAG SEQADV 2KZV HIS A 92 UNP Q7P141 EXPRESSION TAG SEQRES 1 A 92 MET PRO HIS LYS GLU LYS HIS PRO LEU GLN ASP MET PHE SEQRES 2 A 92 THR SER ALA ILE GLU ALA VAL ALA ARG ASP SER GLY TRP SEQRES 3 A 92 ALA GLU LEU SER ALA VAL GLY SER TYR LEU ALA LYS ASN SEQRES 4 A 92 ASP PRO SER PHE ASP PRO ARG ASN TRP GLY HIS GLY ARG SEQRES 5 A 92 LEU SER GLN MET VAL LYS LYS LEU ASP PHE LEU THR VAL SEQRES 6 A 92 GLN GLU SER ARG ASN GLY SER LYS LEU HIS SER GLU ILE SEQRES 7 A 92 ARG LEU ARG HIS ASP GLY LEU GLU HIS HIS HIS HIS HIS SEQRES 8 A 92 HIS HELIX 1 1 PRO A 8 ALA A 21 1 14 HELIX 2 2 GLU A 28 ASP A 40 1 13 HELIX 3 3 GLY A 51 LYS A 59 1 9 SHEET 1 A 2 LEU A 63 ASN A 70 0 SHEET 2 A 2 LYS A 73 LEU A 80 -1 O HIS A 75 N SER A 68 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1