HEADER PROTEIN BINDING 30-JUN-10 2L06 TITLE SOLUTION NMR STRUCTURE OF THE PBS LINKER POLYPEPTIDE DOMAIN (FRAGMENT TITLE 2 254-400) OF PHYCOBILISOME LINKER PROTEIN APCE FROM SYNECHOCYSTIS SP. TITLE 3 PCC 6803. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SGR209C COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHYCOBILISOME LCM CORE-MEMBRANE LINKER POLYPEPTIDE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 254-401; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCYSTIS SP.; SOURCE 3 ORGANISM_TAXID: 1148; SOURCE 4 STRAIN: PCC 6803; SOURCE 5 GENE: APCE, SLR0335; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21-23C KEYWDS ALPHA, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.A.RAMELOT,Y.YANG,J.R.CORT,K.HAMILTON,C.CICCOSANTI,D.LEE,T.B.ACTON, AUTHOR 2 R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 4 14-JUN-23 2L06 1 REMARK REVDAT 3 05-FEB-20 2L06 1 REMARK SEQADV REVDAT 2 15-JUN-11 2L06 1 TITLE REVDAT 1 25-AUG-10 2L06 0 JRNL AUTH T.A.RAMELOT,Y.YANG,J.R.CORT,K.HAMILTON,C.CICCOSANTI,D.LEE, JRNL AUTH 2 T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF THE PBS LINKER POLYPEPTIDE DOMAIN JRNL TITL 2 OF PHYCOBILISOME LINKER PROTEIN APCE FROM SYNECHOCYSTIS SP. JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET SGR209C JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE LINUX9, X-PLOR NIH 2.25 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CNS WATER REFINEMENT REMARK 4 REMARK 4 2L06 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101790. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 100 MM DTT, 0.02 % SODIUM AZIDE, REMARK 210 1.4 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 95% H2O/5% D2O; 20 MM REMARK 210 MES, 100 MM SODIUM CHLORIDE, 5 REMARK 210 MM CALCIUM CHLORIDE, 100 MM DTT, REMARK 210 0.02 % SODIUM AZIDE, 1.4 MM [U- REMARK 210 100% 13C; U-100% 15N] PROTEIN, REMARK 210 100% D2O; 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 100 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 1.2 MM [U-5% 13C; REMARK 210 U-100% 15N] PROTEIN, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPH; 4D 1H-13C NOESY; 3D HNCO; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D (H) REMARK 210 CC(CO)NH-TOCSY; 3D HCCH-TOCSY; REMARK 210 3D HCCH-COSY; 3D H(CC)(CO)NH- REMARK 210 TOCSY; 3D 1H-13C NOESY AROM; (H) REMARK 210 CCH-TOCSY; 3D HN(CO)CA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ; 500 MHZ; 750 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, TOPSPIN 2.1.4, REMARK 210 AUTOSTRUCTURE 2.2.1, X-PLOR NIH REMARK 210 2.25, SPARKY 3.113, PSVS 1.4, REMARK 210 AUTOASSIGN 2.3.0, PDBSTAT 5.0, REMARK 210 CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 125 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 23.47 -149.84 REMARK 500 1 TYR A 4 78.39 58.91 REMARK 500 1 GLU A 38 25.76 45.75 REMARK 500 1 LYS A 43 -86.96 56.03 REMARK 500 1 SER A 46 -156.36 -161.23 REMARK 500 1 GLN A 47 -81.06 67.73 REMARK 500 1 PHE A 81 -35.59 -141.48 REMARK 500 1 HIS A 153 173.65 71.97 REMARK 500 2 SER A 3 46.68 -76.73 REMARK 500 2 TYR A 4 -85.85 62.32 REMARK 500 2 PHE A 5 -58.04 69.81 REMARK 500 2 ALA A 9 -166.89 -161.34 REMARK 500 2 LYS A 43 -125.43 51.40 REMARK 500 2 TYR A 45 97.34 -65.30 REMARK 500 2 SER A 46 19.46 -156.38 REMARK 500 2 GLN A 47 -83.55 -65.05 REMARK 500 2 PRO A 102 108.03 -52.30 REMARK 500 2 PRO A 143 118.86 -25.35 REMARK 500 2 LEU A 145 -167.60 -105.11 REMARK 500 2 ARG A 146 178.10 73.86 REMARK 500 2 LEU A 148 87.12 53.46 REMARK 500 3 TYR A 4 -80.71 64.80 REMARK 500 3 GLN A 12 168.15 64.93 REMARK 500 3 THR A 42 104.84 -59.87 REMARK 500 3 ALA A 44 -23.67 170.35 REMARK 500 3 PHE A 81 -71.66 -89.60 REMARK 500 3 PHE A 84 -83.37 -87.46 REMARK 500 3 ILE A 85 155.53 167.89 REMARK 500 3 PRO A 143 107.92 -56.80 REMARK 500 3 ARG A 146 -70.98 -143.77 REMARK 500 3 HIS A 151 -110.24 67.06 REMARK 500 3 HIS A 152 -71.53 65.13 REMARK 500 4 GLN A 2 -95.07 56.53 REMARK 500 4 TYR A 4 170.47 68.39 REMARK 500 4 ALA A 8 -73.64 -141.91 REMARK 500 4 ALA A 9 -90.21 58.71 REMARK 500 4 LYS A 10 -60.70 -130.44 REMARK 500 4 GLU A 38 15.00 57.42 REMARK 500 4 GLN A 47 -41.59 69.83 REMARK 500 4 GLU A 82 104.04 61.22 REMARK 500 4 PRO A 83 65.53 -63.70 REMARK 500 4 TYR A 144 -90.54 -119.67 REMARK 500 4 LEU A 145 79.30 -68.48 REMARK 500 4 ARG A 146 -33.55 -145.56 REMARK 500 5 SER A 3 -55.47 69.54 REMARK 500 5 ASN A 6 -102.51 60.61 REMARK 500 5 ALA A 7 -84.56 55.08 REMARK 500 5 LYS A 10 87.56 63.72 REMARK 500 5 THR A 42 -53.01 -173.84 REMARK 500 5 SER A 46 -169.71 56.79 REMARK 500 REMARK 500 THIS ENTRY HAS 228 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SGR209C RELATED DB: TARGETDB REMARK 900 RELATED ID: 17031 RELATED DB: BMRB DBREF 2L06 A 1 148 UNP Q55544 Q55544_SYNY3 254 401 SEQADV 2L06 GLU A 149 UNP Q55544 EXPRESSION TAG SEQADV 2L06 HIS A 150 UNP Q55544 EXPRESSION TAG SEQADV 2L06 HIS A 151 UNP Q55544 EXPRESSION TAG SEQADV 2L06 HIS A 152 UNP Q55544 EXPRESSION TAG SEQADV 2L06 HIS A 153 UNP Q55544 EXPRESSION TAG SEQADV 2L06 HIS A 154 UNP Q55544 EXPRESSION TAG SEQADV 2L06 HIS A 155 UNP Q55544 EXPRESSION TAG SEQRES 1 A 155 PRO GLN SER TYR PHE ASN ALA ALA ALA LYS ARG GLN LYS SEQRES 2 A 155 TYR ALA MET LYS PRO GLY LEU SER ALA LEU GLU LYS ASN SEQRES 3 A 155 ALA VAL ILE LYS ALA ALA TYR ARG GLN ILE PHE GLU ARG SEQRES 4 A 155 ASP ILE THR LYS ALA TYR SER GLN SER ILE SER TYR LEU SEQRES 5 A 155 GLU SER GLN VAL ARG ASN GLY ASP ILE SER MET LYS GLU SEQRES 6 A 155 PHE VAL ARG ARG LEU ALA LYS SER PRO LEU TYR ARG LYS SEQRES 7 A 155 GLN PHE PHE GLU PRO PHE ILE ASN SER ARG ALA LEU GLU SEQRES 8 A 155 LEU ALA PHE ARG HIS ILE LEU GLY ARG GLY PRO SER SER SEQRES 9 A 155 ARG GLU GLU VAL GLN LYS TYR PHE SER ILE VAL SER SER SEQRES 10 A 155 GLY GLY LEU PRO ALA LEU VAL ASP ALA LEU VAL ASP SER SEQRES 11 A 155 GLN GLU TYR ALA ASP TYR PHE GLY GLU GLU THR VAL PRO SEQRES 12 A 155 TYR LEU ARG GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 SER A 21 PHE A 37 1 17 HELIX 2 2 GLN A 47 ASN A 58 1 12 HELIX 3 3 SER A 62 LYS A 72 1 11 HELIX 4 4 SER A 73 PHE A 80 1 8 HELIX 5 5 ILE A 85 LEU A 98 1 14 HELIX 6 6 SER A 104 GLY A 118 1 15 HELIX 7 7 GLY A 119 ASP A 129 1 11 HELIX 8 8 SER A 130 TYR A 136 1 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1