HEADER PROTEIN BINDING 01-JUL-10 2L0G TITLE SOLUTION NMR STRUCTURE OF UBIQUITIN-BINDING MOTIF (UBM2) OF HUMAN TITLE 2 POLYMERASE IOTA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA POLYMERASE IOTA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAD30 HOMOLOG B, ETA2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTEV KEYWDS TRANSLESION DNA SYNTHESIS, DNA POLYMERASE IOTA, UBIQUITIN-BINDING KEYWDS 2 MOTIF, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR G.CUI,R.BENIRSCHKE,G.MER REVDAT 4 01-MAY-24 2L0G 1 REMARK SEQADV REVDAT 3 08-DEC-10 2L0G 1 JRNL REVDAT 2 01-DEC-10 2L0G 1 JRNL REVDAT 1 03-NOV-10 2L0G 0 JRNL AUTH G.CUI,R.C.BENIRSCHKE,H.F.TUAN,N.JURANIC,S.MACURA, JRNL AUTH 2 M.V.BOTUYAN,G.MER JRNL TITL STRUCTURAL BASIS OF UBIQUITIN RECOGNITION BY TRANSLESION JRNL TITL 2 SYNTHESIS DNA POLYMERASE IOTA. JRNL REF BIOCHEMISTRY V. 49 10198 2010 JRNL REFN ISSN 0006-2960 JRNL PMID 21049971 JRNL DOI 10.1021/BI101303T REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, AMBER 8 REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), CASE, DARDEN, CHEATHAM, III, SIMMERLING, REMARK 3 WANG, DUKE, LUO, ... AND KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L0G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUL-10. REMARK 100 THE DEPOSITION ID IS D_1000101800. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.18 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 UBM2, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D HBHA(CO) REMARK 210 NH; 3D HNCO; 3D HCCH-TOCSY; 3D REMARK 210 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRVIEW, SANE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 MET A -1 17.91 46.09 REMARK 500 1 PRO A 680 -88.07 -11.46 REMARK 500 1 SER A 681 -40.27 -160.17 REMARK 500 2 MET A -1 8.46 54.88 REMARK 500 2 PRO A 680 157.86 -43.50 REMARK 500 2 ASP A 682 -70.34 -79.75 REMARK 500 3 SER A 681 26.39 46.99 REMARK 500 4 HIS A -2 169.17 62.39 REMARK 500 4 PRO A 680 -152.96 -66.29 REMARK 500 5 PRO A 680 156.20 -39.84 REMARK 500 6 MET A -1 35.08 -148.56 REMARK 500 6 ASP A 682 -85.11 -66.15 REMARK 500 7 PHE A 679 164.43 64.39 REMARK 500 7 PRO A 680 156.61 -43.59 REMARK 500 8 MET A -1 -33.77 -149.29 REMARK 500 8 PRO A 680 161.31 -42.77 REMARK 500 9 HIS A -2 -172.32 62.97 REMARK 500 9 PRO A 680 -157.80 -68.53 REMARK 500 9 ASP A 682 -58.39 -153.40 REMARK 500 10 PRO A 680 -75.38 -13.07 REMARK 500 10 SER A 681 -41.67 -160.91 REMARK 500 10 TRP A 703 0.80 -67.46 REMARK 500 11 HIS A -2 -53.26 73.52 REMARK 500 11 MET A -1 17.47 -151.21 REMARK 500 11 PRO A 680 150.29 -38.10 REMARK 500 11 ASP A 682 -81.37 -69.74 REMARK 500 12 MET A -1 -168.83 -113.06 REMARK 500 12 SER A 681 -6.35 115.11 REMARK 500 12 THR A 706 24.33 -73.38 REMARK 500 13 PRO A 680 -88.18 -12.15 REMARK 500 13 SER A 681 -39.33 -158.76 REMARK 500 13 ASP A 682 -74.22 -75.75 REMARK 500 13 TRP A 703 0.05 -68.93 REMARK 500 14 HIS A -2 -130.47 40.82 REMARK 500 14 MET A -1 -159.74 -101.26 REMARK 500 15 PRO A 680 163.28 -40.19 REMARK 500 15 ASP A 682 -68.50 -90.15 REMARK 500 16 HIS A -2 25.95 -73.85 REMARK 500 17 MET A -1 -47.91 -172.35 REMARK 500 17 PRO A 680 161.09 -39.47 REMARK 500 18 HIS A -2 2.11 52.92 REMARK 500 18 MET A -1 -1.19 -161.43 REMARK 500 18 SER A 681 24.79 46.78 REMARK 500 18 ASP A 682 41.00 32.25 REMARK 500 18 TRP A 703 0.23 -66.99 REMARK 500 19 HIS A -2 -44.43 65.19 REMARK 500 19 PRO A 680 -160.61 -62.21 REMARK 500 19 SER A 681 17.73 -148.58 REMARK 500 19 THR A 706 61.34 -116.52 REMARK 500 20 SER A 681 16.57 116.93 REMARK 500 REMARK 500 THIS ENTRY HAS 51 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L0F RELATED DB: PDB DBREF 2L0G A 679 707 UNP Q9UNA4 POLI_HUMAN 679 707 SEQADV 2L0G GLY A -3 UNP Q9UNA4 EXPRESSION TAG SEQADV 2L0G HIS A -2 UNP Q9UNA4 EXPRESSION TAG SEQADV 2L0G MET A -1 UNP Q9UNA4 EXPRESSION TAG SEQRES 1 A 32 GLY HIS MET PHE PRO SER ASP ILE ASP PRO GLN VAL PHE SEQRES 2 A 32 TYR GLU LEU PRO GLU ALA VAL GLN LYS GLU LEU LEU ALA SEQRES 3 A 32 GLU TRP LYS ARG THR GLY HELIX 1 1 ASP A 684 LEU A 691 1 8 HELIX 2 2 PRO A 692 GLY A 707 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1