HEADER HYDROLASE 19-JUL-10 2L0X TITLE SOLUTION STRUCTURE OF THE 21 KDA GTPASE RHEB BOUND TO GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTP-BINDING PROTEIN RHEB; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RAS HOMOLOG ENRICHED IN BRAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: RHEB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-30 KEYWDS GTPASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.STOLL,R.HEUMANN,C.BERGHAUS,G.KOCK REVDAT 3 10-NOV-10 2L0X 1 JRNL REVDAT 2 25-AUG-10 2L0X 1 JRNL REVDAT 1 04-AUG-10 2L0X 0 JRNL AUTH S.KARASSEK,C.BERGHAUS,M.SCHWARTEN,C.G.GOEMANS,N.OHSE,G.KOCK, JRNL AUTH 2 K.JOCKERS,S.NEUMANN,S.GOTTFRIED,C.HERRMANN,R.HEUMANN,R.STOLL JRNL TITL RAS HOMOLOG ENRICHED IN BRAIN (RHEB) ENHANCES APOPTOTIC JRNL TITL 2 SIGNALING. JRNL REF J.BIOL.CHEM. V. 285 33979 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20685651 JRNL DOI 10.1074/JBC.M109.095968 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L0X COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-10. REMARK 100 THE RCSB ID CODE IS RCSB101817. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9-1.2 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 86 H THR A 88 1.32 REMARK 500 H SER A 86 HG SER A 92 1.33 REMARK 500 HZ2 LYS A 8 HE22 GLN A 57 1.36 REMARK 500 HG SER A 130 H GLU A 133 1.43 REMARK 500 H ASP A 65 HG SER A 68 1.44 REMARK 500 H SER A 149 HG1 THR A 155 1.44 REMARK 500 H GLY A 118 O LEU A 146 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 14 -177.83 -49.31 REMARK 500 1 SER A 16 19.63 53.17 REMARK 500 1 SER A 34 96.28 33.21 REMARK 500 1 TYR A 35 41.87 -150.68 REMARK 500 1 PRO A 37 -139.62 -57.33 REMARK 500 1 ALA A 62 34.37 -144.79 REMARK 500 1 GLN A 64 -79.52 -123.26 REMARK 500 1 GLU A 66 -16.20 -45.20 REMARK 500 1 TYR A 67 -4.81 -175.56 REMARK 500 1 SER A 68 119.86 52.49 REMARK 500 1 GLN A 72 50.89 -174.59 REMARK 500 1 THR A 73 -6.67 77.34 REMARK 500 1 ILE A 76 -170.73 -51.87 REMARK 500 1 ASN A 79 17.62 -150.75 REMARK 500 1 THR A 88 -15.94 -141.92 REMARK 500 1 LYS A 109 -155.15 -93.33 REMARK 500 1 ARG A 127 88.00 38.91 REMARK 500 1 LYS A 151 5.64 -65.38 REMARK 500 1 ALA A 173 -80.55 -68.96 REMARK 500 2 TYR A 14 -158.35 -55.34 REMARK 500 2 PHE A 31 122.09 -39.88 REMARK 500 2 TYR A 35 85.91 -158.04 REMARK 500 2 PRO A 37 84.59 -26.69 REMARK 500 2 THR A 38 35.05 -68.65 REMARK 500 2 LYS A 45 117.13 -163.29 REMARK 500 2 ALA A 62 12.88 -140.66 REMARK 500 2 GLU A 66 -41.61 -21.82 REMARK 500 2 TYR A 67 5.00 -178.86 REMARK 500 2 SER A 68 93.97 36.67 REMARK 500 2 ILE A 76 -169.16 -50.53 REMARK 500 2 ASP A 77 54.28 -117.29 REMARK 500 2 ASN A 79 17.33 -151.19 REMARK 500 2 VAL A 87 21.87 -73.69 REMARK 500 2 ILE A 90 -8.40 -59.37 REMARK 500 2 LYS A 109 94.51 83.85 REMARK 500 2 PRO A 113 101.81 -51.83 REMARK 500 2 HIS A 124 -25.78 -37.53 REMARK 500 2 ARG A 127 90.65 26.68 REMARK 500 2 TYR A 131 -39.56 -39.23 REMARK 500 2 ALA A 173 -81.63 -68.94 REMARK 500 3 TYR A 14 -159.03 -54.90 REMARK 500 3 PHE A 31 92.37 -68.05 REMARK 500 3 ASP A 33 26.75 -73.00 REMARK 500 3 SER A 34 64.05 -64.62 REMARK 500 3 PRO A 37 -137.68 -56.68 REMARK 500 3 ASN A 41 -179.00 -172.33 REMARK 500 3 ALA A 62 21.01 -143.17 REMARK 500 3 GLN A 64 -125.30 -145.31 REMARK 500 3 GLU A 66 56.00 -61.63 REMARK 500 3 TYR A 67 71.67 76.50 REMARK 500 REMARK 500 THIS ENTRY HAS 435 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 MG A 185 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 186 O1B REMARK 620 2 THR A 38 OG1 108.4 REMARK 620 3 SER A 20 OG 64.7 153.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 185 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 186 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15048 RELATED DB: BMRB DBREF 2L0X A 6 174 UNP Q62639 RHEB_RAT 6 174 SEQRES 1 A 169 SER ARG LYS ILE ALA ILE LEU GLY TYR ARG SER VAL GLY SEQRES 2 A 169 LYS SER SER LEU THR ILE GLN PHE VAL GLU GLY GLN PHE SEQRES 3 A 169 VAL ASP SER TYR ASP PRO THR ILE GLU ASN THR PHE THR SEQRES 4 A 169 LYS LEU ILE THR VAL ASN GLY GLN GLU TYR HIS LEU GLN SEQRES 5 A 169 LEU VAL ASP THR ALA GLY GLN ASP GLU TYR SER ILE PHE SEQRES 6 A 169 PRO GLN THR TYR SER ILE ASP ILE ASN GLY TYR ILE LEU SEQRES 7 A 169 VAL TYR SER VAL THR SER ILE LYS SER PHE GLU VAL ILE SEQRES 8 A 169 LYS VAL ILE HIS GLY LYS LEU LEU ASP MET VAL GLY LYS SEQRES 9 A 169 VAL GLN ILE PRO ILE MET LEU VAL GLY ASN LYS LYS ASP SEQRES 10 A 169 LEU HIS MET GLU ARG VAL ILE SER TYR GLU GLU GLY LYS SEQRES 11 A 169 ALA LEU ALA GLU SER TRP ASN ALA ALA PHE LEU GLU SER SEQRES 12 A 169 SER ALA LYS GLU ASN GLN THR ALA VAL ASP VAL PHE ARG SEQRES 13 A 169 ARG ILE ILE LEU GLU ALA GLU LYS ILE ASP GLY ALA ALA HET MG A 185 1 HET GDP A 186 40 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 HELIX 1 1 GLY A 18 GLU A 28 1 11 HELIX 2 2 SER A 89 GLY A 108 1 20 HELIX 3 3 LYS A 120 HIS A 124 5 5 HELIX 4 4 SER A 130 ASN A 142 1 13 HELIX 5 5 GLU A 152 ALA A 174 1 23 SHEET 1 A 6 ASN A 41 VAL A 49 0 SHEET 2 A 6 GLN A 52 ASP A 60 -1 O LEU A 58 N PHE A 43 SHEET 3 A 6 ARG A 7 GLY A 13 1 N ILE A 11 O VAL A 59 SHEET 4 A 6 GLY A 80 SER A 86 1 O ILE A 82 N ALA A 10 SHEET 5 A 6 ILE A 114 ASN A 119 1 O MET A 115 N TYR A 81 SHEET 6 A 6 ALA A 144 GLU A 147 1 O LEU A 146 N GLY A 118 LINK MG MG A 185 O1B GDP A 186 1555 1555 2.41 LINK OG1 THR A 38 MG MG A 185 1555 1555 2.42 LINK OG SER A 20 MG MG A 185 1555 1555 2.43 SITE 1 AC1 3 SER A 20 THR A 38 GDP A 186 SITE 1 AC2 17 TYR A 14 SER A 16 VAL A 17 GLY A 18 SITE 2 AC2 17 LYS A 19 SER A 20 SER A 21 PRO A 37 SITE 3 AC2 17 THR A 38 ASN A 119 LYS A 120 ASP A 122 SITE 4 AC2 17 LEU A 123 SER A 149 ALA A 150 LYS A 151 SITE 5 AC2 17 MG A 185 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1