HEADER PROTEIN TRANSPORT 23-JUL-10 2L16 TITLE SOLUTION STRUCTURE OF BACILLUS SUBTILITS TATAD PROTEIN IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATAD; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: TATAD, YCZB, BSU02630; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21A(+) KEYWDS MEMBRANE PROTEIN, PROTEIN TRANSPORT EXPDTA SOLUTION NMR NUMMDL 40 AUTHOR Y.HU,C.JIN REVDAT 3 01-MAY-24 2L16 1 REMARK SEQADV REVDAT 2 23-FEB-11 2L16 1 JRNL REVDAT 1 08-SEP-10 2L16 0 JRNL AUTH Y.HU,E.ZHAO,H.LI,B.XIA,C.JIN JRNL TITL SOLUTION NMR STRUCTURE OF THE TATA COMPONENT OF THE JRNL TITL 2 TWIN-ARGININE PROTEIN TRANSPORT SYSTEM FROM GRAM-POSITIVE JRNL TITL 3 BACTERIUM BACILLUS SUBTILIS JRNL REF J.AM.CHEM.SOC. V. 132 15942 2010 JRNL REFN ISSN 0002-7863 JRNL PMID 20726548 JRNL DOI 10.1021/JA1053785 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, X-PLOR NIH REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L16 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000101826. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 308 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 0.3; 0.6 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-15N] TATAD-1, 90 % H2O REMARK 210 -2, 10 % D2O-3, 0.01 % DSS-4, 50 REMARK 210 MM SODIUM PHOSPHATE-5, 5 % DPC-6, REMARK 210 0.01 % SODIUM AZIDE-7, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-13C; U-15N] REMARK 210 TATAD-8, 90 % H2O-9, 10 % D2O-10, REMARK 210 0.01 % DSS-11, 50 MM SODIUM REMARK 210 PHOSPHATE-12, 5 % [U-2H] DPC-13, REMARK 210 0.01 % SODIUM AZIDE-14, 90% H2O/ REMARK 210 10% D2O; 1 MM [U-15N] TATAD-15, REMARK 210 90 % H2O-16, 10 % D2O-17, 100 MM REMARK 210 POTASSIUM PHOSPHATE-18, 5 % DPC- REMARK 210 19, 0.01 % SODIUM AZIDE-20, 9.0 REMARK 210 MG IN UP TO 500 UL G-TETRA DNA- REMARK 210 21, 90% H2O/10% D2O; 1 MM [U-15N] REMARK 210 TATAD-22, 90 % H2O-23, 10 % D2O- REMARK 210 24, 100 MM POTASSIUM PHOSPHATE- REMARK 210 25, 5 % DPC-26, 0.01 % SODIUM REMARK 210 AZIDE-27, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HNCO; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 COSY; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D HN(CA) REMARK 210 CO; 2D 1H-15N IPAP REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, X-PLOR NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 40 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST ENERGY AS REMARK 210 WELL AS GOOD CORRELATION WITH REMARK 210 RDC DATA REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-40 REMARK 465 RES C SSSEQI REMARK 465 LYS A 53 REMARK 465 GLU A 54 REMARK 465 GLU A 55 REMARK 465 LYS A 56 REMARK 465 SER A 57 REMARK 465 ALA A 58 REMARK 465 GLU A 59 REMARK 465 LEU A 60 REMARK 465 THR A 61 REMARK 465 ALA A 62 REMARK 465 VAL A 63 REMARK 465 LYS A 64 REMARK 465 GLN A 65 REMARK 465 ASP A 66 REMARK 465 LYS A 67 REMARK 465 ASN A 68 REMARK 465 ALA A 69 REMARK 465 GLY A 70 REMARK 465 LEU A 71 REMARK 465 GLU A 72 REMARK 465 HIS A 73 REMARK 465 HIS A 74 REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 8 -38.61 -39.48 REMARK 500 1 PHE A 21 -72.43 -95.74 REMARK 500 2 PHE A 21 -67.53 -98.77 REMARK 500 3 PHE A 21 -76.64 -95.14 REMARK 500 3 VAL A 48 -154.37 -55.88 REMARK 500 3 SER A 49 32.83 -67.68 REMARK 500 4 PHE A 2 23.43 38.48 REMARK 500 4 PHE A 21 -71.30 -93.80 REMARK 500 5 PHE A 21 -76.37 -83.69 REMARK 500 6 PRO A 8 -38.86 -34.01 REMARK 500 6 PHE A 21 -71.29 -95.58 REMARK 500 7 PHE A 2 21.63 36.79 REMARK 500 7 PHE A 21 -79.57 -99.23 REMARK 500 8 PHE A 21 -75.74 -99.76 REMARK 500 8 SER A 49 74.98 38.65 REMARK 500 9 PRO A 8 -32.51 -33.12 REMARK 500 9 PHE A 21 -71.34 -78.83 REMARK 500 10 PRO A 8 -36.68 -39.34 REMARK 500 10 PHE A 21 -74.05 -97.64 REMARK 500 11 PHE A 21 -72.39 -95.63 REMARK 500 12 PHE A 21 -71.67 -99.47 REMARK 500 13 PHE A 21 -72.95 -95.38 REMARK 500 13 VAL A 48 150.73 -44.38 REMARK 500 13 SER A 49 7.73 55.19 REMARK 500 14 PRO A 8 -43.42 -28.83 REMARK 500 14 PHE A 21 -75.73 -94.17 REMARK 500 14 VAL A 48 162.46 -40.26 REMARK 500 14 SER A 49 72.65 -51.62 REMARK 500 14 ASP A 51 81.28 -171.40 REMARK 500 15 PHE A 21 -73.25 -96.71 REMARK 500 16 PHE A 21 -75.54 -79.42 REMARK 500 16 SER A 49 97.19 -162.87 REMARK 500 17 PHE A 2 19.89 38.73 REMARK 500 17 PHE A 21 -75.78 -99.30 REMARK 500 17 SER A 49 97.73 -173.17 REMARK 500 18 PHE A 21 -70.86 -95.86 REMARK 500 19 PRO A 8 -38.10 -39.43 REMARK 500 19 PHE A 21 -72.78 -96.40 REMARK 500 20 PHE A 21 -79.91 -86.31 REMARK 500 20 SER A 49 5.93 54.18 REMARK 500 21 PRO A 8 -37.67 -38.75 REMARK 500 21 PHE A 21 -73.82 -79.71 REMARK 500 21 SER A 49 29.94 48.17 REMARK 500 22 PHE A 21 -69.15 -94.29 REMARK 500 23 PHE A 21 -73.48 -80.81 REMARK 500 23 ASP A 51 93.52 43.06 REMARK 500 24 PHE A 21 -74.90 -82.39 REMARK 500 24 VAL A 48 129.10 -38.36 REMARK 500 24 SER A 49 -57.45 66.24 REMARK 500 25 PHE A 21 -72.64 -78.58 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17075 RELATED DB: BMRB DBREF 2L16 A 1 70 UNP O31467 TATAD_BACSU 1 70 SEQADV 2L16 LEU A 71 UNP O31467 EXPRESSION TAG SEQADV 2L16 GLU A 72 UNP O31467 EXPRESSION TAG SEQADV 2L16 HIS A 73 UNP O31467 EXPRESSION TAG SEQADV 2L16 HIS A 74 UNP O31467 EXPRESSION TAG SEQADV 2L16 HIS A 75 UNP O31467 EXPRESSION TAG SEQADV 2L16 HIS A 76 UNP O31467 EXPRESSION TAG SEQADV 2L16 HIS A 77 UNP O31467 EXPRESSION TAG SEQADV 2L16 HIS A 78 UNP O31467 EXPRESSION TAG SEQRES 1 A 78 MET PHE SER ASN ILE GLY ILE PRO GLY LEU ILE LEU ILE SEQRES 2 A 78 PHE VAL ILE ALA LEU ILE ILE PHE GLY PRO SER LYS LEU SEQRES 3 A 78 PRO GLU ILE GLY ARG ALA ALA GLY ARG THR LEU LEU GLU SEQRES 4 A 78 PHE LYS SER ALA THR LYS SER LEU VAL SER GLY ASP GLU SEQRES 5 A 78 LYS GLU GLU LYS SER ALA GLU LEU THR ALA VAL LYS GLN SEQRES 6 A 78 ASP LYS ASN ALA GLY LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 GLY A 6 PHE A 21 1 16 HELIX 2 2 LYS A 25 GLY A 50 1 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1