HEADER MEMBRANE PROTEIN 28-JUL-10 2L1H TITLE MOUSE PRION PROTEIN FRAGMENT 121-231 AT 20 C COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 120-231; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PRNP, RP23-401J24.1-001; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PRSETA KEYWDS PRION, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR B.CHRISTEN,F.F.DAMBERGER,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH REVDAT 2 01-FEB-12 2L1H 1 JRNL REVDAT 1 10-AUG-11 2L1H 0 JRNL AUTH B.CHRISTEN,F.F.DAMBERGER,D.R.PEREZ,S.HORNEMANN,K.WUTHRICH JRNL TITL TEMPERATURE-DEPENDENT CONFORMATIONAL EXCHANGE IN THE JRNL TITL 2 CELLULAR FORM OF PRION PROTEINS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : OPALP REMARK 3 AUTHORS : LUGINBUHL, GUNTERT, BILLETER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-10. REMARK 100 THE RCSB ID CODE IS RCSB101837. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293.2 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.01 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-99% 13C; U-99% 15N] REMARK 210 PROTEIN, 10 MM [U-2H] SODIUM REMARK 210 ACETATE-2, 0.02 % SODIUM AZIDE-3, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, CARA, ATNOS/CANDID 1.2, REMARK 210 DYANA 1.0.3, MOLMOL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: TWO 13C-RESOLVED NOESYS WERE MEASURED, ONE WITH THE 13C REMARK 210 CARRIER CENTERED IN THE ALIPHATIC REGION AND ONE WITH THE 13C REMARK 210 CARRIER CENTERED IN THE AROMATIC REGION. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 3 ARG A 148 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 13 TYR A 169 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 18 VAL A 176 CA - CB - CG1 ANGL. DEV. = 12.4 DEGREES REMARK 500 18 ARG A 230 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 20 ARG A 151 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 20 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 122 55.80 -90.52 REMARK 500 1 LEU A 125 -72.27 -85.17 REMARK 500 1 ASN A 171 -178.65 72.60 REMARK 500 1 LYS A 194 -51.93 -121.62 REMARK 500 1 ARG A 230 -72.76 -56.22 REMARK 500 1 SER A 231 56.06 163.08 REMARK 500 2 LEU A 125 -75.05 -97.12 REMARK 500 2 GLN A 168 71.43 55.89 REMARK 500 2 SER A 170 21.98 -153.95 REMARK 500 2 ARG A 230 -82.94 -73.02 REMARK 500 2 SER A 231 14.77 -152.58 REMARK 500 3 SER A 120 -177.45 61.12 REMARK 500 3 VAL A 121 49.33 -77.75 REMARK 500 3 VAL A 122 50.28 38.21 REMARK 500 3 LEU A 125 -93.32 -105.94 REMARK 500 3 ASN A 153 51.07 -144.71 REMARK 500 3 GLN A 168 -40.51 74.02 REMARK 500 4 VAL A 122 44.68 24.47 REMARK 500 4 TYR A 150 -71.57 -54.42 REMARK 500 4 TYR A 155 63.20 -59.77 REMARK 500 4 ARG A 156 -59.24 -154.02 REMARK 500 4 ASP A 167 -94.01 27.38 REMARK 500 4 SER A 170 -50.62 -133.52 REMARK 500 4 LYS A 194 -60.25 -108.92 REMARK 500 4 SER A 231 77.53 50.88 REMARK 500 5 SER A 120 -179.36 61.29 REMARK 500 5 VAL A 122 49.99 -81.23 REMARK 500 5 LEU A 125 -66.23 -104.29 REMARK 500 5 ARG A 136 107.91 -50.84 REMARK 500 5 HIS A 140 75.87 -115.83 REMARK 500 5 PRO A 158 -179.82 -62.30 REMARK 500 5 GLN A 168 -159.52 58.55 REMARK 500 5 TYR A 169 -174.36 64.04 REMARK 500 5 SER A 170 26.11 -169.05 REMARK 500 5 GLN A 172 -58.75 -130.56 REMARK 500 5 THR A 191 -57.69 -146.58 REMARK 500 5 SER A 231 83.67 52.43 REMARK 500 6 LEU A 125 -56.77 -122.25 REMARK 500 6 ARG A 136 103.52 -55.29 REMARK 500 6 ASP A 167 -84.66 60.30 REMARK 500 6 GLN A 168 -49.46 -140.52 REMARK 500 6 TYR A 169 -156.17 54.82 REMARK 500 6 SER A 170 -44.85 -161.89 REMARK 500 6 THR A 188 -72.21 -79.17 REMARK 500 6 ARG A 230 -75.17 -80.18 REMARK 500 7 TYR A 155 30.99 -66.32 REMARK 500 7 ASP A 167 -34.23 -36.43 REMARK 500 7 GLN A 168 -32.22 -144.34 REMARK 500 7 TYR A 169 -95.51 27.71 REMARK 500 7 SER A 170 -74.72 -172.01 REMARK 500 REMARK 500 THIS ENTRY HAS 132 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 231 SER A 232 2 146.60 REMARK 500 SER A 231 SER A 232 4 125.52 REMARK 500 SER A 231 SER A 232 11 137.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 157 0.08 SIDE CHAIN REMARK 500 1 TYR A 169 0.06 SIDE CHAIN REMARK 500 1 TYR A 225 0.08 SIDE CHAIN REMARK 500 2 TYR A 157 0.08 SIDE CHAIN REMARK 500 2 TYR A 163 0.07 SIDE CHAIN REMARK 500 3 ARG A 151 0.09 SIDE CHAIN REMARK 500 4 TYR A 128 0.09 SIDE CHAIN REMARK 500 4 TYR A 169 0.07 SIDE CHAIN REMARK 500 4 ARG A 208 0.12 SIDE CHAIN REMARK 500 5 ARG A 156 0.09 SIDE CHAIN REMARK 500 6 ARG A 148 0.10 SIDE CHAIN REMARK 500 6 ARG A 208 0.10 SIDE CHAIN REMARK 500 7 ARG A 151 0.11 SIDE CHAIN REMARK 500 8 ARG A 136 0.10 SIDE CHAIN REMARK 500 8 ARG A 151 0.08 SIDE CHAIN REMARK 500 8 TYR A 163 0.07 SIDE CHAIN REMARK 500 8 TYR A 225 0.08 SIDE CHAIN REMARK 500 9 ARG A 208 0.09 SIDE CHAIN REMARK 500 10 TYR A 155 0.08 SIDE CHAIN REMARK 500 10 TYR A 157 0.07 SIDE CHAIN REMARK 500 11 TYR A 150 0.10 SIDE CHAIN REMARK 500 11 TYR A 225 0.07 SIDE CHAIN REMARK 500 11 ARG A 229 0.08 SIDE CHAIN REMARK 500 11 ARG A 230 0.08 SIDE CHAIN REMARK 500 12 TYR A 150 0.08 SIDE CHAIN REMARK 500 12 TYR A 157 0.11 SIDE CHAIN REMARK 500 13 PHE A 141 0.08 SIDE CHAIN REMARK 500 13 TYR A 225 0.07 SIDE CHAIN REMARK 500 13 ARG A 230 0.10 SIDE CHAIN REMARK 500 14 ARG A 164 0.08 SIDE CHAIN REMARK 500 14 TYR A 169 0.09 SIDE CHAIN REMARK 500 14 ARG A 230 0.11 SIDE CHAIN REMARK 500 15 ARG A 148 0.13 SIDE CHAIN REMARK 500 15 ARG A 156 0.08 SIDE CHAIN REMARK 500 15 ARG A 164 0.09 SIDE CHAIN REMARK 500 15 TYR A 218 0.06 SIDE CHAIN REMARK 500 17 TYR A 169 0.07 SIDE CHAIN REMARK 500 18 TYR A 150 0.08 SIDE CHAIN REMARK 500 18 ARG A 208 0.08 SIDE CHAIN REMARK 500 20 TYR A 150 0.07 SIDE CHAIN REMARK 500 20 TYR A 218 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L1D RELATED DB: PDB REMARK 900 RELATED ID: 2L1E RELATED DB: PDB REMARK 900 RELATED ID: 2L1K RELATED DB: PDB REMARK 900 RELATED ID: 17084 RELATED DB: BMRB DBREF 2L1H A 121 232 UNP Q4FJQ7 Q4FJQ7_MOUSE 120 231 SEQADV 2L1H GLY A 119 UNP Q4FJQ7 EXPRESSION TAG SEQADV 2L1H SER A 120 UNP Q4FJQ7 EXPRESSION TAG SEQRES 1 A 114 GLY SER VAL VAL GLY GLY LEU GLY GLY TYR MET LEU GLY SEQRES 2 A 114 SER ALA MET SER ARG PRO MET ILE HIS PHE GLY ASN ASP SEQRES 3 A 114 TRP GLU ASP ARG TYR TYR ARG GLU ASN MET TYR ARG TYR SEQRES 4 A 114 PRO ASN GLN VAL TYR TYR ARG PRO VAL ASP GLN TYR SER SEQRES 5 A 114 ASN GLN ASN ASN PHE VAL HIS ASP CYS VAL ASN ILE THR SEQRES 6 A 114 ILE LYS GLN HIS THR VAL THR THR THR THR LYS GLY GLU SEQRES 7 A 114 ASN PHE THR GLU THR ASP VAL LYS MET MET GLU ARG VAL SEQRES 8 A 114 VAL GLU GLN MET CYS VAL THR GLN TYR GLN LYS GLU SER SEQRES 9 A 114 GLN ALA TYR TYR ASP GLY ARG ARG SER SER HELIX 1 1 ASN A 143 MET A 154 1 12 HELIX 2 2 TYR A 155 TYR A 157 5 3 HELIX 3 3 PRO A 165 TYR A 169 5 5 HELIX 4 4 GLN A 172 THR A 190 1 19 HELIX 5 5 THR A 199 SER A 232 1 34 SHEET 1 A 2 MET A 129 LEU A 130 0 SHEET 2 A 2 TYR A 162 TYR A 163 -1 O TYR A 163 N MET A 129 SSBOND 1 CYS A 179 CYS A 214 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1