HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 11-AUG-10 2L25 TITLE NP_888769.1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORDETELLA BRONCHISEPTICA; SOURCE 3 ORGANISM_TAXID: 518; SOURCE 4 GENE: BB2225, BB3495; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PSPEEDET KEYWDS JCSG, STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 JOINT CENTER FOR STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR A.WAHAB,P.SERRANO,M.GERALT,I.WILSON,K.WUTHRICH,JOINT CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS (JCSG) REVDAT 4 14-JUN-23 2L25 1 REMARK REVDAT 3 05-FEB-20 2L25 1 REMARK SEQADV REVDAT 2 03-AUG-11 2L25 1 VERSN KEYWDS REVDAT 1 25-AUG-10 2L25 0 JRNL AUTH A.WAHAB,P.SERRANO,M.GERALT,K.WUTHRICH JRNL TITL NMR STRUCTURE OF PROTEIN NP_888769.1, A PHAGE-RELATED JRNL TITL 2 PROTEIN IN THE BORDETELLA BRONCHISEPTICA GENOME JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UNIO 2.0.0, OPALP REMARK 3 AUTHORS : TORSTEN HERRMANN (UNIO), LUGINBUHL, GUNTERT, REMARK 3 BILLETER AND WUTHRICH (OPALP) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ENERGY MINIMIZATION USING AMBER FORCE REMARK 3 FIELD REMARK 4 REMARK 4 2L25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-10. REMARK 100 THE DEPOSITION ID IS D_1000101861. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.11 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-98% 13C; U-98% 15N] REMARK 210 NP_888769.1, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 4.5 MM SODIUM AZIDE, 5 % D2O, REMARK 210 20 MM SODIUM PHOSPHATE BUFFER, REMARK 210 50 MM NACL PH 6.0, 95% H2O, 5% REMARK 210 D2O, 0.005 MM NAN3 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 15N-1H HSQC; 4D APSY-HACANH; REMARK 210 5D APSY-HACACONH; 5D APSY- REMARK 210 CBCACONH; 15N-RESOLVED [1H,1H]- REMARK 210 NOESY; 13C(ALIPHATIC)-RESOLVED REMARK 210 [1H,1H]-NOESY; 13C(AROMATIC)- REMARK 210 RESOLVED [1H,1H]-NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UNIO 2.0.0, CYANA 3.0, TOPSPIN REMARK 210 1.3, MOLMOL 2K.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 80 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP A 135 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 -79.91 45.35 REMARK 500 1 ALA A 25 88.78 46.21 REMARK 500 1 ASN A 32 -1.01 50.13 REMARK 500 1 THR A 53 -170.57 -69.47 REMARK 500 1 SER A 55 -154.35 52.70 REMARK 500 1 ARG A 56 102.18 52.74 REMARK 500 1 HIS A 62 -175.06 177.58 REMARK 500 1 ARG A 63 170.33 74.65 REMARK 500 1 ASP A 79 126.74 56.65 REMARK 500 1 PHE A 95 78.17 -118.45 REMARK 500 1 ARG A 111 -66.45 64.66 REMARK 500 1 THR A 121 168.15 65.01 REMARK 500 1 ALA A 124 17.75 -164.78 REMARK 500 1 PHE A 138 39.71 -149.10 REMARK 500 2 MET A 2 -73.07 -126.54 REMARK 500 2 SER A 3 -71.24 63.53 REMARK 500 2 ALA A 25 92.85 44.78 REMARK 500 2 ASN A 32 -10.48 56.57 REMARK 500 2 THR A 36 156.47 74.04 REMARK 500 2 THR A 53 42.74 -88.24 REMARK 500 2 SER A 55 179.97 64.60 REMARK 500 2 ALA A 58 63.91 -161.19 REMARK 500 2 ALA A 59 14.33 -157.88 REMARK 500 2 SER A 81 -169.07 -66.25 REMARK 500 2 VAL A 97 16.38 -67.39 REMARK 500 2 LEU A 99 82.53 46.56 REMARK 500 2 SER A 103 -154.55 -141.64 REMARK 500 2 LEU A 106 166.08 175.01 REMARK 500 2 ARG A 111 -67.76 64.68 REMARK 500 2 PRO A 113 -168.67 -70.36 REMARK 500 2 ALA A 124 14.85 -143.99 REMARK 500 2 TYR A 139 166.15 64.05 REMARK 500 3 MET A 2 43.30 -87.84 REMARK 500 3 SER A 3 -69.88 65.70 REMARK 500 3 ALA A 25 105.64 58.05 REMARK 500 3 TRP A 30 -178.86 -64.71 REMARK 500 3 GLN A 31 -77.48 -53.88 REMARK 500 3 ALA A 52 135.97 68.96 REMARK 500 3 ASP A 61 40.25 -143.02 REMARK 500 3 ARG A 63 -167.21 49.24 REMARK 500 3 SER A 81 -68.61 61.42 REMARK 500 3 ARG A 82 2.75 54.12 REMARK 500 3 VAL A 97 12.32 -61.56 REMARK 500 3 VAL A 100 89.21 -68.11 REMARK 500 3 ARG A 111 -42.56 69.78 REMARK 500 3 ALA A 124 34.51 -156.07 REMARK 500 4 MET A 2 66.01 -153.78 REMARK 500 4 SER A 3 -80.05 57.40 REMARK 500 4 ALA A 25 95.19 46.15 REMARK 500 4 GLN A 31 123.09 71.13 REMARK 500 REMARK 500 THIS ENTRY HAS 356 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 136 GLN A 137 7 142.03 REMARK 500 PRO A 140 GLU A 141 13 147.89 REMARK 500 PRO A 24 ALA A 25 14 -148.13 REMARK 500 ARG A 66 GLY A 67 14 149.15 REMARK 500 GLY A 122 ASP A 123 14 -143.92 REMARK 500 GLN A 64 TYR A 65 18 144.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 22 0.08 SIDE CHAIN REMARK 500 1 TYR A 47 0.07 SIDE CHAIN REMARK 500 1 TYR A 134 0.07 SIDE CHAIN REMARK 500 2 TYR A 139 0.08 SIDE CHAIN REMARK 500 3 ARG A 45 0.08 SIDE CHAIN REMARK 500 4 ARG A 111 0.09 SIDE CHAIN REMARK 500 5 ARG A 63 0.09 SIDE CHAIN REMARK 500 5 ARG A 82 0.11 SIDE CHAIN REMARK 500 5 TYR A 134 0.08 SIDE CHAIN REMARK 500 6 ARG A 22 0.08 SIDE CHAIN REMARK 500 6 ARG A 82 0.11 SIDE CHAIN REMARK 500 7 ARG A 111 0.12 SIDE CHAIN REMARK 500 8 ARG A 109 0.08 SIDE CHAIN REMARK 500 9 ARG A 14 0.09 SIDE CHAIN REMARK 500 10 ARG A 8 0.09 SIDE CHAIN REMARK 500 10 ARG A 45 0.16 SIDE CHAIN REMARK 500 11 ARG A 66 0.08 SIDE CHAIN REMARK 500 11 PHE A 95 0.09 SIDE CHAIN REMARK 500 12 TYR A 43 0.08 SIDE CHAIN REMARK 500 12 ARG A 82 0.10 SIDE CHAIN REMARK 500 13 ARG A 22 0.10 SIDE CHAIN REMARK 500 13 ARG A 45 0.08 SIDE CHAIN REMARK 500 13 ARG A 63 0.14 SIDE CHAIN REMARK 500 13 ARG A 66 0.15 SIDE CHAIN REMARK 500 14 ARG A 45 0.12 SIDE CHAIN REMARK 500 14 TYR A 65 0.07 SIDE CHAIN REMARK 500 14 ARG A 66 0.10 SIDE CHAIN REMARK 500 14 HIS A 126 0.10 SIDE CHAIN REMARK 500 15 ARG A 22 0.15 SIDE CHAIN REMARK 500 15 ARG A 45 0.09 SIDE CHAIN REMARK 500 15 ARG A 82 0.10 SIDE CHAIN REMARK 500 15 TYR A 134 0.07 SIDE CHAIN REMARK 500 16 ARG A 22 0.10 SIDE CHAIN REMARK 500 17 ARG A 22 0.17 SIDE CHAIN REMARK 500 18 ARG A 109 0.08 SIDE CHAIN REMARK 500 19 ARG A 82 0.10 SIDE CHAIN REMARK 500 20 ARG A 22 0.19 SIDE CHAIN REMARK 500 20 ARG A 82 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17124 RELATED DB: BMRB REMARK 900 RELATED ID: 367705 RELATED DB: TARGETDB DBREF 2L25 A 2 141 UNP Q7TTM0 Q7TTM0_BORBR 1 140 SEQADV 2L25 GLY A 1 UNP Q7TTM0 EXPRESSION TAG SEQRES 1 A 141 GLY MET SER GLN ASP LEU ILE ARG ALA ALA PHE GLU LYS SEQRES 2 A 141 ARG LEU SER ASP TRP ALA LYS ALA ARG THR PRO ALA LEU SEQRES 3 A 141 PRO VAL ALA TRP GLN ASN THR LYS PHE THR PRO PRO ALA SEQRES 4 A 141 ALA GLY VAL TYR LEU ARG ALA TYR VAL MET PRO ALA ALA SEQRES 5 A 141 THR ILE SER ARG ASP ALA ALA GLY ASP HIS ARG GLN TYR SEQRES 6 A 141 ARG GLY VAL PHE GLN VAL ASN VAL VAL MET PRO ILE GLY SEQRES 7 A 141 ASP GLY SER ARG SER ALA GLU GLN VAL ALA ALA GLU LEU SEQRES 8 A 141 ASP ALA LEU PHE PRO VAL ASN LEU VAL MET GLN SER GLY SEQRES 9 A 141 GLY LEU ALA VAL ARG VAL ARG THR PRO ILE SER ASN GLY SEQRES 10 A 141 GLN PRO THR THR GLY ASP ALA ASP HIS THR VAL PRO ILE SEQRES 11 A 141 SER LEU GLY TYR ASP VAL GLN PHE TYR PRO GLU HELIX 1 1 SER A 3 ARG A 22 1 20 HELIX 2 2 SER A 83 PHE A 95 1 13 SHEET 1 A 6 VAL A 28 ALA A 29 0 SHEET 2 A 6 TYR A 43 MET A 49 1 O ALA A 46 N ALA A 29 SHEET 3 A 6 GLY A 67 PRO A 76 -1 O GLN A 70 N TYR A 47 SHEET 4 A 6 ASP A 125 VAL A 136 -1 O TYR A 134 N GLY A 67 SHEET 5 A 6 ALA A 107 ARG A 109 -1 N ARG A 109 O ASP A 135 SHEET 6 A 6 MET A 101 GLN A 102 -1 N MET A 101 O VAL A 108 CISPEP 1 THR A 36 PRO A 37 1 -4.57 CISPEP 2 THR A 36 PRO A 37 2 -6.08 CISPEP 3 THR A 36 PRO A 37 3 -18.34 CISPEP 4 THR A 36 PRO A 37 4 -3.58 CISPEP 5 THR A 36 PRO A 37 5 11.46 CISPEP 6 THR A 36 PRO A 37 6 3.62 CISPEP 7 THR A 36 PRO A 37 7 -2.00 CISPEP 8 THR A 36 PRO A 37 8 -3.60 CISPEP 9 THR A 36 PRO A 37 9 -12.36 CISPEP 10 THR A 36 PRO A 37 10 -7.89 CISPEP 11 THR A 36 PRO A 37 11 -13.63 CISPEP 12 THR A 36 PRO A 37 12 11.31 CISPEP 13 THR A 36 PRO A 37 13 5.22 CISPEP 14 THR A 36 PRO A 37 14 0.54 CISPEP 15 THR A 36 PRO A 37 15 5.93 CISPEP 16 THR A 36 PRO A 37 16 -6.34 CISPEP 17 THR A 36 PRO A 37 17 -3.56 CISPEP 18 THR A 36 PRO A 37 18 -6.39 CISPEP 19 THR A 36 PRO A 37 19 -3.86 CISPEP 20 THR A 36 PRO A 37 20 -11.48 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1