HEADER SIGNALING PROTEIN 18-AUG-10 2L2G TITLE SOLUTION STRUCTURE OF OPOSSUM DOMAIN 11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGF2R DOMAIN 11; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MONODELPHIS DOMESTICA; SOURCE 3 ORGANISM_TAXID: 13616; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26A KEYWDS INSULIN-LIKE GROWTH FACTOR 2, MANNOSE 6 PHOSPHATE RECEPTOR, GENOMIC KEYWDS 2 IMPRINTING, PROTEIN EVOLUTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.WILLIAMS,H.HOPPE,D.REZGUI,M.REZGUI,S.FRAGO,R.Z.ELLIS,P.WATTANA- AUTHOR 2 AMORN,S.N.PRINCE,O.J.ZACCHEO,B.FORBES,E.Y.JONES,M.P.CRUMP,A.H.BASSIM REVDAT 3 25-FEB-15 2L2G 1 AUTHOR REVDAT 2 12-DEC-12 2L2G 1 JRNL REVDAT 1 15-FEB-12 2L2G 0 JRNL AUTH C.WILLIAMS,H.J.HOPPE,D.REZGUI,M.STRICKLAND,B.E.FORBES, JRNL AUTH 2 F.GRUTZNER,S.FRAGO,R.Z.ELLIS,P.WATTANA-AMORN,S.N.PRINCE, JRNL AUTH 3 O.J.ZACCHEO,C.M.NOLAN,A.J.MUNGALL,E.Y.JONES,M.P.CRUMP, JRNL AUTH 4 A.B.HASSAN JRNL TITL AN EXON SPLICE ENHANCER PRIMES IGF2:IGF2R BINDING SITE JRNL TITL 2 STRUCTURE AND FUNCTION EVOLUTION. JRNL REF SCIENCE V. 338 1209 2012 JRNL REFN ISSN 0036-8075 JRNL PMID 23197533 JRNL DOI 10.1126/SCIENCE.1228633 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2, CNS 1.2, ICING R765 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS), VUISTER, REMARK 3 DORELEIJERS, SOUSA DA SILVA (ICING) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ARIA1.2 PROTOCOL. COOL_1 AND COOL_2 REMARK 3 STEPS INCREASED TO 40K AND COOL_2, ARIA1.2 WATER REFINEMENT REMARK 3 MODIFIED WITH RECOORD WATER REFINEMENT PARAMETERS REMARK 4 REMARK 4 2L2G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB101872. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 5 % D2O, 20 MM SODIUM ACETATE, REMARK 210 0.1 MM EDTA, 100 UM SODIUM AZIDE, REMARK 210 0.5-1 MM [U-98% 15N] IGF2R DOMAIN REMARK 210 11, 95% H2O/5% D2O; 5 MM D2O, 20 REMARK 210 MM SODIUM ACETATE, 0.1 MM EDTA, REMARK 210 100 UM SODIUM AZIDE, 0.5-1 MM [U- REMARK 210 98% 13C; U-98% 15N] IGF2R DOMAIN REMARK 210 11, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D HNHA; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMRJ, ARIA 1.2, NMRPIPE, CNS REMARK 210 1.2, CCPNMR 2.13, TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 1671 REMARK 465 HIS A 1672 REMARK 465 HIS A 1673 REMARK 465 HIS A 1674 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG12 ILE A 1528 HG2 MET A 1598 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A1525 157.81 69.96 REMARK 500 1 GLU A1560 -89.22 -72.69 REMARK 500 1 LYS A1561 32.73 -147.49 REMARK 500 1 CYS A1569 18.32 52.42 REMARK 500 1 ASN A1589 108.35 -52.11 REMARK 500 1 TRP A1593 124.71 -39.50 REMARK 500 1 LYS A1617 -60.35 -130.94 REMARK 500 1 ASN A1638 -80.03 65.70 REMARK 500 1 LYS A1639 124.71 -172.46 REMARK 500 2 ASP A1530 -97.03 -164.52 REMARK 500 2 ASN A1531 70.64 -175.41 REMARK 500 2 GLU A1560 -82.18 -98.03 REMARK 500 2 CYS A1569 13.77 59.54 REMARK 500 2 ASN A1589 109.78 -55.15 REMARK 500 2 ASN A1618 -66.57 73.50 REMARK 500 2 HIS A1632 2.59 -64.15 REMARK 500 2 ASP A1633 -164.00 -74.28 REMARK 500 2 ASN A1638 -76.55 65.05 REMARK 500 2 LYS A1639 106.70 -173.59 REMARK 500 2 PRO A1667 -179.70 -63.53 REMARK 500 3 GLU A1560 -80.00 -110.60 REMARK 500 3 LYS A1561 22.50 -153.57 REMARK 500 3 LYS A1587 69.37 60.08 REMARK 500 3 ASN A1589 109.29 -49.74 REMARK 500 3 ASP A1610 61.83 62.92 REMARK 500 3 SER A1616 -54.55 -146.09 REMARK 500 3 LEU A1620 -163.98 -100.32 REMARK 500 3 HIS A1632 2.46 -66.32 REMARK 500 3 ASP A1633 -171.69 -66.96 REMARK 500 3 ASN A1638 -82.85 60.14 REMARK 500 3 LYS A1639 113.05 -173.25 REMARK 500 4 GLU A1560 -89.77 -71.22 REMARK 500 4 LYS A1561 22.20 -146.86 REMARK 500 4 LYS A1587 69.43 60.95 REMARK 500 4 ASN A1589 108.89 -48.27 REMARK 500 4 TRP A1593 124.56 -39.28 REMARK 500 4 ASN A1618 -167.02 -164.30 REMARK 500 4 HIS A1632 1.73 -67.15 REMARK 500 4 ASN A1638 -82.58 63.26 REMARK 500 4 LYS A1639 124.22 -173.24 REMARK 500 4 THR A1649 19.70 -140.05 REMARK 500 5 ASP A1530 33.64 -89.10 REMARK 500 5 LYS A1549 104.33 -50.20 REMARK 500 5 SER A1559 0.01 -64.38 REMARK 500 5 GLU A1560 -82.03 -87.06 REMARK 500 5 LYS A1561 14.56 -152.75 REMARK 500 5 TRP A1593 122.99 -38.61 REMARK 500 5 SER A1616 -63.20 -95.26 REMARK 500 5 ASN A1618 -156.07 -150.17 REMARK 500 5 LEU A1620 -168.24 -102.02 REMARK 500 REMARK 500 THIS ENTRY HAS 212 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 3 TRP A1593 24.6 L L OUTSIDE RANGE REMARK 500 7 TRP A1593 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CNJ RELATED DB: PDB REMARK 900 RELATED ID: 1GP0 RELATED DB: PDB REMARK 900 RELATED ID: 17134 RELATED DB: BMRB REMARK 900 RELATED ID: 2L2H RELATED DB: PDB DBREF 2L2G A 1524 1674 PDB 2L2G 2L2G 1524 1674 SEQRES 1 A 151 MET LYS SER ASN ILE GLN ASP ASN CYS GLN VAL THR ASN SEQRES 2 A 151 PRO ALA THR GLY HIS LEU PHE ASP LEU ASN SER LEU LYS SEQRES 3 A 151 ASN ASP SER GLY TYR SER VAL ALA TYR SER GLU LYS GLY SEQRES 4 A 151 LEU ILE TYR ILE GLY ILE CYS GLY GLY THR LYS ASN CYS SEQRES 5 A 151 PRO SER GLY VAL GLY VAL CYS PHE GLY LEU THR LYS ILE SEQRES 6 A 151 ASN ALA GLY SER TRP ASN SER GLN LEU MET TYR VAL ASP SEQRES 7 A 151 GLN VAL LEU GLN LEU VAL TYR ASP ASP GLY ALA PRO CYS SEQRES 8 A 151 PRO SER LYS ASN ALA LEU LYS TYR LYS SER VAL ILE SER SEQRES 9 A 151 PHE VAL CYS THR HIS ASP SER GLY ALA ASN ASN LYS PRO SEQRES 10 A 151 VAL PHE VAL SER LEU ASP LYS GLN THR CYS THR LEU TYR SEQRES 11 A 151 PHE SER TRP HIS THR PRO LEU ALA CYS GLU LYS GLU GLU SEQRES 12 A 151 PRO ARG HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 1546 LYS A 1549 5 4 HELIX 2 2 PRO A 1659 CYS A 1662 5 4 SHEET 1 A 2 GLN A1533 THR A1535 0 SHEET 2 A 2 LEU A1542 ASP A1544 -1 O PHE A1543 N VAL A1534 SHEET 1 B 4 TYR A1554 TYR A1558 0 SHEET 2 B 4 GLY A1562 ILE A1566 -1 O ILE A1566 N TYR A1554 SHEET 3 B 4 VAL A1579 PHE A1583 -1 O CYS A1582 N TYR A1565 SHEET 4 B 4 ASN A1589 SER A1592 -1 O GLY A1591 N VAL A1581 SHEET 1 C 5 LEU A1597 VAL A1600 0 SHEET 2 C 5 VAL A1603 TYR A1608 -1 O VAL A1603 N VAL A1600 SHEET 3 C 5 LYS A1623 CYS A1630 -1 O PHE A1628 N LEU A1604 SHEET 4 C 5 THR A1651 THR A1658 1 O TRP A1656 N VAL A1629 SHEET 5 C 5 PRO A1640 ASP A1646 -1 N VAL A1641 O SER A1655 SSBOND 1 CYS A 1532 CYS A 1569 1555 1555 2.02 SSBOND 2 CYS A 1575 CYS A 1582 1555 1555 2.05 SSBOND 3 CYS A 1614 CYS A 1650 1555 1555 2.03 SSBOND 4 CYS A 1630 CYS A 1662 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1