data_2L2J # _entry.id 2L2J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2L2J RCSB RCSB101875 WWPDB D_1000101875 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 2L2K _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L2J _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-08-20 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Oberstrass, F.F.' 1 'Allain, F.H.-T.' 2 'Stefl, R.' 3 # _citation.id primary _citation.title 'The Solution Structure of the ADAR2 dsRBM-RNA Complex Reveals a Sequence-Specific Readout of the Minor Groove.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 143 _citation.page_first 225 _citation.page_last 237 _citation.year 2010 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 20946981 _citation.pdbx_database_id_DOI 10.1016/j.cell.2010.09.026 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Stefl, R.' 1 primary 'Oberstrass, F.C.' 2 primary 'Hood, J.L.' 3 primary 'Jourdan, M.' 4 primary 'Zimmermann, M.' 5 primary 'Skrisovska, L.' 6 primary 'Maris, C.' 7 primary 'Peng, L.' 8 primary 'Hofr, C.' 9 primary 'Emeson, R.B.' 10 primary 'Allain, F.H.' 11 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'RNA (42-MER)' _entity.formula_weight 13470.015 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGUAAGGUGGGUGGAAUCCUUCGGGAUCCCACCUACCCUGCC _entity_poly.pdbx_seq_one_letter_code_can GGUAAGGUGGGUGGAAUCCUUCGGGAUCCCACCUACCCUGCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 A n 1 5 A n 1 6 G n 1 7 G n 1 8 U n 1 9 G n 1 10 G n 1 11 G n 1 12 U n 1 13 G n 1 14 G n 1 15 A n 1 16 A n 1 17 U n 1 18 C n 1 19 C n 1 20 U n 1 21 U n 1 22 C n 1 23 G n 1 24 G n 1 25 G n 1 26 A n 1 27 U n 1 28 C n 1 29 C n 1 30 C n 1 31 A n 1 32 C n 1 33 C n 1 34 U n 1 35 A n 1 36 C n 1 37 C n 1 38 C n 1 39 U n 1 40 G n 1 41 C n 1 42 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2L2J _struct_ref.pdbx_db_accession 2L2J _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code GGUAAGGUGGGUGGAAUCCUUCGGGAUCCCACCUACCCUGCC _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L2J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 42 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2L2J _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 42 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 42 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 2 '3D 1H-13C NOESY' 1 3 2 '2D 1H-13C HSQC' 1 4 1 '2D 1H-1H TOCSY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 20 _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.pressure AMBIENT _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 278 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1.5 mM RNA (42-MER)-1, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1.5 mM RNA (42-MER)-2, 100% D2O' 2 '100% D2O' '1.5 mM RNA (42-MER)-3, 100% D2O' 3 '100% D2O' '1.5 mM RNA (42-MER)-4, 100% D2O' 4 '100% D2O' # _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model 'DRX, AVANCE' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'BRUKER DRX, AVANCE' # _pdbx_nmr_refine.entry_id 2L2J _pdbx_nmr_refine.method 'TORSION ANGLE DYNAMICS, SIMULATED ANNEALING' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L2J _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L2J _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'CASE, D.A. ET AL.' refinement AMBER ? 1 'Bruker Biospin' 'structure solution' TOPSPIN 2.0 2 Goddard 'structure solution' SPARKY ? 3 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 4 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L2J _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L2J _struct.title 'Solution NMR structure of the lower part of the R/G stem loop RNA' _struct.pdbx_descriptor 'RNA (42-MER)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L2J _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'RNA, STEM-LOOP, RNA-EDITING, AC MISMATCH' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 42 N3 ? ? A G 1 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 42 O2 ? ? A G 1 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 42 N4 ? ? A G 1 A C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 41 N3 ? ? A G 2 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 41 O2 ? ? A G 2 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 41 N4 ? ? A G 2 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 A G 40 O6 ? ? A U 3 A G 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog8 hydrog ? ? A U 3 O2 ? ? ? 1_555 A G 40 N1 ? ? A U 3 A G 40 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog9 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 39 N3 ? ? A A 4 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 39 O4 ? ? A A 4 A U 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 A C 38 N3 ? ? A A 5 A C 38 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 6 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 6 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 6 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 7 N1 ? ? ? 1_555 A C 36 N3 ? ? A G 7 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 7 N2 ? ? ? 1_555 A C 36 O2 ? ? A G 7 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 7 O6 ? ? ? 1_555 A C 36 N4 ? ? A G 7 A C 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 8 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 8 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 34 O2 ? ? A G 9 A U 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog21 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 34 N3 ? ? A G 9 A U 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 10 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 10 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 10 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 32 N3 ? ? A G 11 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 32 O2 ? ? A G 11 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 32 N4 ? ? A G 11 A C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 31 N1 ? ? A U 12 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 31 N6 ? ? A U 12 A A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 13 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 13 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 13 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 14 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 14 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 14 A C 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A A 15 N6 ? ? ? 1_555 A C 28 N3 ? ? A A 15 A C 28 1_555 ? ? ? ? ? ? 'A-C MISPAIR' ? ? hydrog37 hydrog ? ? A A 16 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 16 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A A 16 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 16 A U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A U 17 N3 ? ? ? 1_555 A A 26 N1 ? ? A U 17 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A U 17 O4 ? ? ? 1_555 A A 26 N6 ? ? A U 17 A A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog41 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 25 N1 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog42 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 25 O6 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog43 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 25 N2 ? ? A C 18 A G 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog44 hydrog ? ? A C 19 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 19 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 19 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 19 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 23 N1 ? ? A U 20 A G 23 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 2L2J _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 G 7 7 7 G G A . n A 1 8 U 8 8 8 U U A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 A 15 15 15 A A A . n A 1 16 A 16 16 16 A A A . n A 1 17 U 17 17 17 U U A . n A 1 18 C 18 18 18 C C A . n A 1 19 C 19 19 19 C C A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 C 22 22 22 C C A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 G 25 25 25 G G A . n A 1 26 A 26 26 26 A A A . n A 1 27 U 27 27 27 U U A . n A 1 28 C 28 28 28 C C A . n A 1 29 C 29 29 29 C C A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 C 33 33 33 C C A . n A 1 34 U 34 34 34 U U A . n A 1 35 A 35 35 35 A A A . n A 1 36 C 36 36 36 C C A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n A 1 39 U 39 39 39 U U A . n A 1 40 G 40 40 40 G G A . n A 1 41 C 41 41 41 C C A . n A 1 42 C 42 42 42 C C A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-27 2 'Structure model' 1 1 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Version format compliance' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'RNA (42-MER)-1' 1.5 ? mM ? 1 'RNA (42-MER)-2' 1.5 ? mM ? 2 'RNA (42-MER)-3' 1.5 ? mM ? 3 'RNA (42-MER)-4' 1.5 ? mM ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 6 "O4'" A G 23 ? ? "C1'" A G 23 ? ? N9 A G 23 ? ? 112.83 108.50 4.33 0.70 N 2 7 "O4'" A G 23 ? ? "C1'" A G 23 ? ? N9 A G 23 ? ? 113.36 108.50 4.86 0.70 N 3 8 "O4'" A G 23 ? ? "C1'" A G 23 ? ? N9 A G 23 ? ? 113.06 108.50 4.56 0.70 N 4 20 "O4'" A G 23 ? ? "C1'" A G 23 ? ? N9 A G 23 ? ? 113.19 108.50 4.69 0.70 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2L2J 'double helix' 2L2J 'a-form double helix' 2L2J tetraloop 2L2J 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 42 1_555 -0.561 -0.210 0.293 0.091 -14.674 -0.646 1 A_G1:C42_A A 1 ? A 42 ? 19 1 1 A G 2 1_555 A C 41 1_555 -0.125 -0.129 0.598 2.726 -11.566 -1.669 2 A_G2:C41_A A 2 ? A 41 ? 19 1 1 A U 3 1_555 A G 40 1_555 1.666 -0.551 0.677 -2.988 -15.458 -6.118 3 A_U3:G40_A A 3 ? A 40 ? 28 1 1 A A 4 1_555 A U 39 1_555 -0.141 -0.118 0.176 3.733 -13.697 -3.721 4 A_A4:U39_A A 4 ? A 39 ? 20 1 1 A A 5 1_555 A C 38 1_555 -2.101 -0.180 0.024 0.180 -10.929 -0.590 5 A_A5:C38_A A 5 ? A 38 ? ? ? 1 A G 6 1_555 A C 37 1_555 -0.617 -0.197 0.367 0.406 -9.746 -0.289 6 A_G6:C37_A A 6 ? A 37 ? 19 1 1 A G 7 1_555 A C 36 1_555 -0.419 -0.245 0.238 -8.315 -15.792 -3.302 7 A_G7:C36_A A 7 ? A 36 ? 19 1 1 A U 8 1_555 A A 35 1_555 -0.210 -0.157 0.803 -9.003 -8.731 1.493 8 A_U8:A35_A A 8 ? A 35 ? 20 1 1 A G 9 1_555 A U 34 1_555 -1.433 -0.548 0.876 5.338 -18.089 -7.929 9 A_G9:U34_A A 9 ? A 34 ? 28 1 1 A G 10 1_555 A C 33 1_555 -0.157 -0.252 0.766 3.718 -16.486 -3.792 10 A_G10:C33_A A 10 ? A 33 ? 19 1 1 A G 11 1_555 A C 32 1_555 -0.161 -0.215 0.553 -4.299 -21.300 -4.470 11 A_G11:C32_A A 11 ? A 32 ? 19 1 1 A U 12 1_555 A A 31 1_555 -0.355 -0.095 0.708 -6.804 -12.741 -2.086 12 A_U12:A31_A A 12 ? A 31 ? 20 1 1 A G 13 1_555 A C 30 1_555 -0.333 -0.214 0.583 2.690 -13.307 -2.664 13 A_G13:C30_A A 13 ? A 30 ? 19 1 1 A G 14 1_555 A C 29 1_555 -0.656 -0.309 0.437 0.057 -14.374 -2.318 14 A_G14:C29_A A 14 ? A 29 ? 19 1 1 A A 15 1_555 A C 28 1_555 -1.882 -0.174 0.264 2.959 -9.177 -1.130 15 A_A15:C28_A A 15 ? A 28 ? ? ? 1 A A 16 1_555 A U 27 1_555 0.356 -0.059 0.156 -0.968 -6.816 -2.480 16 A_A16:U27_A A 16 ? A 27 ? 20 1 1 A U 17 1_555 A A 26 1_555 -0.237 -0.039 0.309 -5.111 -8.496 2.331 17 A_U17:A26_A A 17 ? A 26 ? 20 1 1 A C 18 1_555 A G 25 1_555 0.329 -0.053 0.026 -3.390 -1.189 1.033 18 A_C18:G25_A A 18 ? A 25 ? 19 1 1 A C 19 1_555 A G 24 1_555 0.507 -0.216 -0.396 4.301 3.764 -1.137 19 A_C19:G24_A A 19 ? A 24 ? 19 1 1 A U 20 1_555 A G 23 1_555 0.845 -5.509 -0.168 0.122 -17.779 -103.010 20 A_U20:G23_A A 20 ? A 23 ? ? 6 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 42 1_555 A G 2 1_555 A C 41 1_555 -0.015 -1.361 3.118 -2.470 2.448 31.371 -2.929 -0.403 2.998 4.510 4.550 31.558 1 AA_G1G2:C41C42_AA A 1 ? A 42 ? A 2 ? A 41 ? 1 A G 2 1_555 A C 41 1_555 A U 3 1_555 A G 40 1_555 -0.364 -1.714 3.319 0.837 5.199 41.652 -2.924 0.594 3.085 7.277 -1.171 41.968 2 AA_G2U3:G40C41_AA A 2 ? A 41 ? A 3 ? A 40 ? 1 A U 3 1_555 A G 40 1_555 A A 4 1_555 A U 39 1_555 0.454 -1.929 2.699 5.887 7.674 24.317 -5.839 0.204 2.056 17.363 -13.320 26.143 3 AA_U3A4:U39G40_AA A 3 ? A 40 ? A 4 ? A 39 ? 1 A A 4 1_555 A U 39 1_555 A A 5 1_555 A C 38 1_555 0.479 -2.262 3.116 -1.466 7.561 23.249 -7.311 -1.513 2.244 18.134 3.516 24.475 4 AA_A4A5:C38U39_AA A 4 ? A 39 ? A 5 ? A 38 ? 1 A A 5 1_555 A C 38 1_555 A G 6 1_555 A C 37 1_555 -0.427 -1.845 3.260 -4.987 -3.948 38.152 -2.285 0.011 3.453 -5.989 7.565 38.659 5 AA_A5G6:C37C38_AA A 5 ? A 38 ? A 6 ? A 37 ? 1 A G 6 1_555 A C 37 1_555 A G 7 1_555 A C 36 1_555 -0.572 -1.881 3.446 -0.339 2.478 33.359 -3.690 0.937 3.307 4.309 0.590 33.450 6 AA_G6G7:C36C37_AA A 6 ? A 37 ? A 7 ? A 36 ? 1 A G 7 1_555 A C 36 1_555 A U 8 1_555 A A 35 1_555 0.327 -1.740 3.326 -3.298 -1.301 30.993 -2.983 -1.249 3.343 -2.425 6.146 31.190 7 AA_G7U8:A35C36_AA A 7 ? A 36 ? A 8 ? A 35 ? 1 A U 8 1_555 A A 35 1_555 A G 9 1_555 A U 34 1_555 -0.370 -1.825 2.565 -0.849 -2.374 27.376 -3.369 0.609 2.720 -5.002 1.789 27.490 8 AA_U8G9:U34A35_AA A 8 ? A 35 ? A 9 ? A 34 ? 1 A G 9 1_555 A U 34 1_555 A G 10 1_555 A C 33 1_555 0.218 -1.555 3.285 -0.220 -5.015 36.887 -1.747 -0.371 3.459 -7.880 0.346 37.215 9 AA_G9G10:C33U34_AA A 9 ? A 34 ? A 10 ? A 33 ? 1 A G 10 1_555 A C 33 1_555 A G 11 1_555 A C 32 1_555 0.024 -1.764 3.375 0.860 -0.357 33.567 -2.993 0.103 3.392 -0.618 -1.489 33.579 10 AA_G10G11:C32C33_AA A 10 ? A 33 ? A 11 ? A 32 ? 1 A G 11 1_555 A C 32 1_555 A U 12 1_555 A A 31 1_555 0.089 -1.758 3.253 -1.538 -2.293 31.483 -2.798 -0.452 3.362 -4.216 2.828 31.600 11 AA_G11U12:A31C32_AA A 11 ? A 32 ? A 12 ? A 31 ? 1 A U 12 1_555 A A 31 1_555 A G 13 1_555 A C 30 1_555 -0.060 -1.486 2.833 -0.233 -0.637 30.914 -2.680 0.073 2.862 -1.195 0.438 30.921 12 AA_U12G13:C30A31_AA A 12 ? A 31 ? A 13 ? A 30 ? 1 A G 13 1_555 A C 30 1_555 A G 14 1_555 A C 29 1_555 -0.144 -1.839 3.112 -1.407 5.268 33.294 -3.948 0.040 2.800 9.118 2.435 33.725 13 AA_G13G14:C29C30_AA A 13 ? A 30 ? A 14 ? A 29 ? 1 A G 14 1_555 A C 29 1_555 A A 15 1_555 A C 28 1_555 0.095 -2.088 2.874 -1.866 7.490 27.328 -5.630 -0.536 2.223 15.466 3.853 28.377 14 AA_G14A15:C28C29_AA A 14 ? A 29 ? A 15 ? A 28 ? 1 A A 15 1_555 A C 28 1_555 A A 16 1_555 A U 27 1_555 -0.001 -2.002 3.301 -1.105 3.989 39.379 -3.414 -0.126 3.090 5.900 1.635 39.588 15 AA_A15A16:U27C28_AA A 15 ? A 28 ? A 16 ? A 27 ? 1 A A 16 1_555 A U 27 1_555 A U 17 1_555 A A 26 1_555 0.288 -2.348 3.300 -0.807 -0.532 29.930 -4.433 -0.726 3.332 -1.029 1.563 29.945 16 AA_A16U17:A26U27_AA A 16 ? A 27 ? A 17 ? A 26 ? 1 A U 17 1_555 A A 26 1_555 A C 18 1_555 A G 25 1_555 -0.150 -2.120 3.065 1.628 4.987 32.718 -4.464 0.507 2.711 8.783 -2.868 33.124 17 AA_U17C18:G25A26_AA A 17 ? A 26 ? A 18 ? A 25 ? 1 A C 18 1_555 A G 25 1_555 A C 19 1_555 A G 24 1_555 -0.523 -1.867 3.033 2.475 10.226 27.346 -5.514 1.475 2.155 20.685 -5.007 29.265 18 AA_C18C19:G24G25_AA A 18 ? A 25 ? A 19 ? A 24 ? 1 A C 19 1_555 A G 24 1_555 A U 20 1_555 A G 23 1_555 -0.446 -1.450 3.122 11.151 11.437 97.352 -1.133 0.465 2.936 7.577 -7.387 98.326 19 AA_C19U20:G23G24_AA A 19 ? A 24 ? A 20 ? A 23 ? #