HEADER PROTEIN BINDING 06-SEP-10 2L34 TITLE STRUCTURE OF THE DAP12 TRANSMEMBRANE HOMODIMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: TYRO PROTEIN TYROSINE KINASE-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 35-67; COMPND 5 SYNONYM: DNAX-ACTIVATION PROTEIN 12, KILLER-ACTIVATING RECEPTOR- COMPND 6 ASSOCIATED PROTEIN, KAR-ASSOCIATED PROTEIN; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TYROBP, DAP12, KARAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: TRPLE KEYWDS IMMUNORECEPTOR, TRANSMEMBRANE ASSEMBLY, DAP12, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR M.E.CALL,K.W.WUCHERPFENNIG,J.J.CHOU REVDAT 1 03-NOV-10 2L34 0 JRNL AUTH M.E.CALL,K.W.WUCHERPFENNIG,J.J.CHOU JRNL TITL THE STRUCTURAL BASIS FOR INTRAMEMBRANE ASSEMBLY OF AN JRNL TITL 2 ACTIVATING IMMUNORECEPTOR COMPLEX. JRNL REF NAT.IMMUNOL. V. 11 1023 2010 JRNL REFN ISSN 1529-2908 JRNL PMID 20890284 JRNL DOI 10.1038/NI.1943 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L34 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-SEP-10. REMARK 100 THE RCSB ID CODE IS RCSB101896. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 (DIMER) MM [U-100% 13C; U- REMARK 210 100% 15N; U-80% 2H] DAP12 REMARK 210 TRANSMEMBRANE PEPTIDE-1, 20 MM REMARK 210 SODIUM PHOSPHATE-2, 25 MM SDS-3, REMARK 210 250 MM FOSCHOLINE-14-4, 95% H2O/ REMARK 210 5% D2O; 0.5 (DIMER) MM [U-100% REMARK 210 13C; U-100% 15N] DAP12 REMARK 210 TRANSMEMBRANE PEPTIDE-5, 20 MM REMARK 210 SODIUM PHOSPHATE-6, 25 MM [U-100% REMARK 210 2H] SDS-7, 250 MM [U-100% 2H] REMARK 210 FOSCHOLINE-14-8, 95% H2O/5% D2O; REMARK 210 0.5 (MONOMER) MM [U-100% 15N; U- REMARK 210 100% 2H] DAP12 TRANSMEMBRANE REMARK 210 PEPTIDE-9, 0.5 (MONOMER) MM [U- REMARK 210 100% 13C] DAP12 TRANSMEMBRANE REMARK 210 PEPTIDE-10, 25 MM [U-100% 2H] SDS REMARK 210 -11, 250 MM [U-100% 2H] REMARK 210 FOSCHOLINE-14-12, 20 MM SODIUM REMARK 210 PHOSPHATE-13, 95% H2O/5% D2O; 0.5 REMARK 210 (DIMER) MM [U-10% 13C] DAP12 REMARK 210 TRANSMEMBRANE PEPTIDE-14, 25 MM REMARK 210 [U-100% 2H] SDS-15, 250 MM [U- REMARK 210 100% 2H] FOSCHOLINE-14-16, 20 MM REMARK 210 SODIUM PHOSPHATE-17, 95% H2O/5% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D HN(COCA)CB; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 75 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-15 REMARK 470 RES CSSEQI ATOMS REMARK 470 LEU A 33 O REMARK 470 LEU B 33 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 4 -76.01 56.64 REMARK 500 1 SER A 5 79.95 69.26 REMARK 500 1 LEU A 30 78.06 -174.11 REMARK 500 1 ARG A 32 93.42 -49.53 REMARK 500 1 SER B 2 -2.89 64.51 REMARK 500 1 THR B 3 -7.18 66.89 REMARK 500 1 VAL B 4 49.05 31.24 REMARK 500 1 SER B 5 55.95 -156.65 REMARK 500 1 ARG B 32 80.29 49.20 REMARK 500 2 THR A 3 -98.98 -62.76 REMARK 500 2 LEU A 30 78.10 -174.38 REMARK 500 2 ARG A 32 101.35 -54.82 REMARK 500 2 SER B 2 15.40 46.18 REMARK 500 2 THR B 3 160.71 56.06 REMARK 500 2 SER B 5 81.10 -156.54 REMARK 500 2 ARG B 32 86.33 51.00 REMARK 500 3 VAL A 4 -7.23 -58.81 REMARK 500 3 SER A 5 60.35 63.94 REMARK 500 3 LEU A 30 78.71 -175.15 REMARK 500 3 SER B 2 134.39 63.81 REMARK 500 3 THR B 3 113.80 -160.09 REMARK 500 3 SER B 5 48.52 -173.31 REMARK 500 3 PRO B 6 88.11 -66.95 REMARK 500 3 ARG B 32 87.14 -60.16 REMARK 500 4 THR A 3 -82.07 52.56 REMARK 500 4 SER A 5 69.51 39.62 REMARK 500 4 LEU A 30 78.02 -174.48 REMARK 500 4 SER B 2 26.48 47.40 REMARK 500 4 THR B 3 120.78 59.34 REMARK 500 4 SER B 5 71.99 -172.56 REMARK 500 4 PRO B 6 86.45 -46.31 REMARK 500 5 SER A 2 -74.21 -76.59 REMARK 500 5 THR A 3 -87.63 -167.27 REMARK 500 5 VAL A 4 96.80 41.23 REMARK 500 5 PRO A 6 69.59 -64.80 REMARK 500 5 LEU A 30 78.73 -175.39 REMARK 500 5 SER B 2 -17.34 71.77 REMARK 500 5 VAL B 4 29.53 34.20 REMARK 500 5 SER B 5 72.46 -166.59 REMARK 500 6 LEU A 30 77.57 -173.71 REMARK 500 6 SER B 2 -30.66 73.65 REMARK 500 6 THR B 3 99.61 54.71 REMARK 500 6 ARG B 32 80.13 50.98 REMARK 500 7 SER A 2 -88.18 -151.14 REMARK 500 7 THR A 3 -144.97 -62.84 REMARK 500 7 LEU A 30 76.47 -172.40 REMARK 500 7 SER B 2 24.90 44.51 REMARK 500 7 VAL B 4 72.34 39.06 REMARK 500 7 PRO B 6 101.29 -46.13 REMARK 500 7 ARG B 32 87.11 -64.36 REMARK 500 REMARK 500 THIS ENTRY HAS 99 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2HAC RELATED DB: PDB REMARK 900 STRUCTURE OF ZETA-ZETA TRANSMEMBRANE DIMER REMARK 900 RELATED ID: 2K4F RELATED DB: PDB REMARK 900 MOUSE CD3EPSILON CYTOPLASMIC TAIL REMARK 900 RELATED ID: 2L35 RELATED DB: PDB DBREF 2L34 A 1 33 UNP O43914 TYOBP_HUMAN 35 67 DBREF 2L34 B 1 33 UNP O43914 TYOBP_HUMAN 35 67 SEQADV 2L34 VAL A 14 UNP O43914 MET 48 CONFLICT SEQADV 2L34 VAL B 14 UNP O43914 MET 48 CONFLICT SEQRES 1 A 33 CYS SER THR VAL SER PRO GLY VAL LEU ALA GLY ILE VAL SEQRES 2 A 33 VAL GLY ASP LEU VAL LEU THR VAL LEU ILE ALA LEU ALA SEQRES 3 A 33 VAL TYR PHE LEU GLY ARG LEU SEQRES 1 B 33 CYS SER THR VAL SER PRO GLY VAL LEU ALA GLY ILE VAL SEQRES 2 B 33 VAL GLY ASP LEU VAL LEU THR VAL LEU ILE ALA LEU ALA SEQRES 3 B 33 VAL TYR PHE LEU GLY ARG LEU HELIX 1 1 PRO A 6 GLY A 31 1 26 HELIX 2 2 CYS B 1 SER B 5 5 5 HELIX 3 3 PRO B 6 ARG B 32 1 27 SSBOND 1 CYS A 1 CYS B 1 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1