HEADER HYDROLASE 13-SEP-10 2L3H TITLE NMR STRUCTURE IN A MEMBRANE ENVIRONMENT REVEALS PUTATIVE AMYLOIDOGENIC TITLE 2 REGIONS OF THE SEVI PRECURSOR PEPTIDE PAP248-286 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROSTATIC ACID PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 248-286; COMPND 5 EC: 3.1.3.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 OTHER_DETAILS: ACPP KEYWDS SEVI, PAP248-286, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 8 AUTHOR A.RAMAMOORTHY,R.NANGA,J.BRENDER,S.VIVEKANANDAN,N.POPOVYCH REVDAT 2 01-MAY-24 2L3H 1 REMARK REVDAT 1 06-OCT-10 2L3H 0 JRNL AUTH R.P.NANGA,J.R.BRENDER,S.VIVEKANANDAN,N.POPOVYCH, JRNL AUTH 2 A.RAMAMOORTHY JRNL TITL NMR STRUCTURE IN A MEMBRANE ENVIRONMENT REVEALS PUTATIVE JRNL TITL 2 AMYLOIDOGENIC REGIONS OF THE SEVI PRECURSOR PEPTIDE JRNL TITL 3 PAP(248-286). JRNL REF J.AM.CHEM.SOC. V. 131 17972 2009 JRNL REFN ISSN 0002-7863 JRNL PMID 19995078 JRNL DOI 10.1021/JA908170S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X-PLOR REMARK 3 NIH), SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000101909. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 7.3 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.5 MM PAP248-286-1, 120 MM REMARK 210 SODIUM CHLORIDE-2, 20 MM SODIUM REMARK 210 PHOSPHATE-3, 200 MM [U-99% 2H] REMARK 210 SDS-4, 10 % [U-99% 2H] D2O-5, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.16, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 8 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 262 H ASN A 265 1.58 REMARK 500 O LEU A 268 N HIS A 270 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 257 -13.64 80.99 REMARK 500 1 VAL A 262 -38.32 -33.43 REMARK 500 1 ASN A 269 -39.11 -17.88 REMARK 500 1 HIS A 270 -83.54 -58.22 REMARK 500 1 ARG A 273 -164.08 41.56 REMARK 500 1 GLN A 276 21.51 -67.61 REMARK 500 1 ILE A 277 103.67 -36.73 REMARK 500 1 SER A 279 104.72 -176.35 REMARK 500 1 TYR A 280 -73.58 -66.91 REMARK 500 1 LYS A 282 -38.06 -24.03 REMARK 500 1 ILE A 284 -49.84 -16.34 REMARK 500 2 LYS A 251 -83.15 -71.01 REMARK 500 2 LYS A 255 -114.68 -57.03 REMARK 500 2 VAL A 262 -35.03 -31.34 REMARK 500 2 ASN A 269 -41.27 -16.65 REMARK 500 2 ARG A 273 -115.74 -51.65 REMARK 500 2 SER A 279 104.06 -176.00 REMARK 500 2 TYR A 280 -74.30 -65.81 REMARK 500 2 LYS A 282 -37.28 -36.04 REMARK 500 2 ILE A 284 -41.81 -23.34 REMARK 500 3 LYS A 251 -77.37 -64.89 REMARK 500 3 SER A 256 70.95 18.15 REMARK 500 3 ARG A 257 -36.92 -29.71 REMARK 500 3 VAL A 262 -28.12 -37.36 REMARK 500 3 ASN A 269 -40.67 -17.10 REMARK 500 3 ARG A 273 -83.73 -55.03 REMARK 500 3 ILE A 277 98.08 -26.56 REMARK 500 3 SER A 279 104.36 -176.19 REMARK 500 3 TYR A 280 -73.66 -68.32 REMARK 500 3 LYS A 282 -40.49 -23.06 REMARK 500 3 ILE A 284 -46.83 -16.69 REMARK 500 4 LYS A 251 -72.66 -32.81 REMARK 500 4 SER A 256 -93.27 45.13 REMARK 500 4 ARG A 257 -89.06 46.09 REMARK 500 4 VAL A 264 -33.81 -39.44 REMARK 500 4 ASN A 269 -41.34 -16.52 REMARK 500 4 ILE A 277 92.27 30.43 REMARK 500 4 LYS A 282 -36.67 -29.94 REMARK 500 4 ILE A 284 -47.05 -16.58 REMARK 500 5 ILE A 249 -37.10 -27.56 REMARK 500 5 HIS A 250 -32.57 -36.68 REMARK 500 5 LYS A 251 -86.31 -57.99 REMARK 500 5 SER A 256 -56.24 -150.14 REMARK 500 5 ASN A 269 -36.34 -19.36 REMARK 500 5 THR A 275 3.34 -61.05 REMARK 500 5 ILE A 277 103.14 -30.11 REMARK 500 5 SER A 279 104.59 -176.30 REMARK 500 5 TYR A 280 -72.87 -64.63 REMARK 500 5 LYS A 282 -36.18 -27.39 REMARK 500 5 ILE A 284 -49.51 -15.13 REMARK 500 REMARK 500 THIS ENTRY HAS 78 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2L3H A 248 286 UNP P15309 PPAP_HUMAN 248 286 SEQRES 1 A 39 GLY ILE HIS LYS GLN LYS GLU LYS SER ARG LEU GLN GLY SEQRES 2 A 39 GLY VAL LEU VAL ASN GLU ILE LEU ASN HIS MET LYS ARG SEQRES 3 A 39 ALA THR GLN ILE PRO SER TYR LYS LYS LEU ILE MET TYR HELIX 1 1 GLY A 261 ASN A 269 1 9 HELIX 2 2 LYS A 281 MET A 285 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1