HEADER DNA BINDING PROTEIN 19-SEP-10 2L3N TITLE SOLUTION STRUCTURE OF RAP1-TAZ1 FUSION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA-BINDING PROTEIN RAP1,TELOMERE LENGTH REGULATOR TAZ1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 639-693, 362-395; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THE FUSION PROTEIN OF DNA-BINDING PROTEIN RAP1 (639- COMPND 7 693), LINKER (GGSGGSKLGGSGGS) AND TELOMERE LENGTH REGULATOR TAZ1 COMPND 8 (362-395) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHIZOSACCHAROMYCES POMBE (STRAIN 972 / ATCC SOURCE 3 24843); SOURCE 4 ORGANISM_COMMON: FISSION YEAST; SOURCE 5 ORGANISM_TAXID: 284812; SOURCE 6 STRAIN: 972 / ATCC 24843; SOURCE 7 GENE: RAP1, SPBC1778.02, TAZ1, MYB, MYB1, SPAC16A10.07C; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PET-28A-SUMO KEYWDS RAP1, TAZ1, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Z.R.ZHOU,F.WANG,Y.CHEN,M.LEI,H.HU REVDAT 4 01-MAY-24 2L3N 1 REMARK REVDAT 3 01-JAN-20 2L3N 1 COMPND SOURCE DBREF SEQADV REVDAT 2 18-DEC-19 2L3N 1 JRNL REMARK SEQADV REVDAT 1 12-JAN-11 2L3N 0 JRNL AUTH Y.CHEN,R.RAI,Z.R.ZHOU,J.KANOH,C.RIBEYRE,Y.YANG,H.ZHENG, JRNL AUTH 2 P.DAMAY,F.WANG,H.TSUJII,Y.HIRAOKA,D.SHORE,H.Y.HU,S.CHANG, JRNL AUTH 3 M.LEI JRNL TITL A CONSERVED MOTIF WITHIN RAP1 HAS DIVERSIFIED ROLES IN JRNL TITL 2 TELOMERE PROTECTION AND REGULATION IN DIFFERENT ORGANISMS. JRNL REF NAT.STRUCT.MOL.BIOL. V. 18 213 2011 JRNL REFN ESSN 1545-9985 JRNL PMID 21217703 JRNL DOI 10.1038/NSMB.1974 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-OCT-10. REMARK 100 THE DEPOSITION ID IS D_1000101915. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 0.07; NULL REMARK 210 PRESSURE : AMBIENT ATM; NULL REMARK 210 SAMPLE CONTENTS : 1.1 MM [U-99% 13C; U-99% 15N] REMARK 210 SPRT6-1, 20 MM SODIUM PHOSPHATE- REMARK 210 2, 50 MM SODIUM CHLORIDE-3, 1 MM REMARK 210 DTT-4, 90% H2O/10% D2O; 0.6 MM REMARK 210 [U-99% 15N] SPRT6-5, 20 MM REMARK 210 SODIUM PHOSPHATE-6, 50 MM SODIUM REMARK 210 CHLORIDE-7, 1 MM DTT-8, 93% H2O/ REMARK 210 7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HNCACO; REMARK 210 3D C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HNHA; 2D 1H-15N REMARK 210 IPAP HSQC; 3D CCH-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 2 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 3 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 4 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 4 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 4 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 5 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 95 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 7 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 7 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 8 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 9 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 9 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 11 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 11 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 12 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 12 ARG A 44 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 12 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 12 ARG A 91 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 12 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 13 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 13 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 13 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 14 ARG A 42 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 14 ARG A 42 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 14 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 15 ARG A 71 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 15 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 16 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 16 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 17 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 17 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 18 ARG A 6 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 18 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 18 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 19 ARG A 12 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 19 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 20 ARG A 91 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 20 ARG A 93 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 20 ARG A 95 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 74 -178.41 59.97 REMARK 500 1 ASP A 84 -25.60 55.80 REMARK 500 2 SER A 56 150.57 62.29 REMARK 500 2 SER A 62 -173.95 57.23 REMARK 500 2 ASP A 84 26.91 -77.91 REMARK 500 3 SER A 83 -12.13 59.21 REMARK 500 4 VAL A 76 -2.33 54.03 REMARK 500 4 SER A 99 -98.22 49.24 REMARK 500 5 GLN A 54 44.10 -74.75 REMARK 500 5 THR A 55 -9.80 -157.16 REMARK 500 5 ASP A 82 171.30 60.45 REMARK 500 5 SER A 83 47.37 -76.15 REMARK 500 6 ASN A 26 17.09 55.81 REMARK 500 6 LEU A 80 172.21 59.52 REMARK 500 6 ASP A 84 -50.66 -139.32 REMARK 500 7 SER A 7 171.81 59.11 REMARK 500 7 LEU A 74 -169.06 55.50 REMARK 500 7 SER A 83 49.55 -85.98 REMARK 500 8 SER A 7 -149.18 47.54 REMARK 500 8 LYS A 53 -60.08 57.51 REMARK 500 9 GLN A 102 37.10 -74.98 REMARK 500 10 ALA A 101 -143.03 48.07 REMARK 500 11 SER A 7 -105.74 40.03 REMARK 500 14 LYS A 72 165.57 59.50 REMARK 500 14 SER A 103 -177.69 58.15 REMARK 500 15 ASP A 73 36.21 -78.12 REMARK 500 16 SER A 67 168.97 60.84 REMARK 500 16 THR A 100 -33.91 -138.07 REMARK 500 17 SER A 7 162.97 62.27 REMARK 500 17 LYS A 77 13.23 54.94 REMARK 500 17 MET A 79 37.08 -79.73 REMARK 500 17 ASP A 84 37.73 -75.41 REMARK 500 18 LYS A 72 39.03 -84.41 REMARK 500 18 ASP A 82 54.99 -143.58 REMARK 500 20 SER A 8 -39.35 65.49 REMARK 500 20 GLN A 54 -167.28 55.13 REMARK 500 20 LYS A 77 150.66 63.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 91 0.11 SIDE CHAIN REMARK 500 13 ARG A 91 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 17199 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE FUSION PROTEIN OF DNA-BINDING PROTEIN RAP1 (639-693), LINKER REMARK 999 (GGSGGSKLGGSGGS) AND TELOMERE LENGTH REGULATOR TAZ1 (362-395) DBREF 2L3N A 2 56 UNP Q96TL7 RAP1_SCHPO 639 693 DBREF 2L3N A 71 104 UNP P79005 TAZ1_SCHPO 362 395 SEQADV 2L3N SER A 1 UNP Q96TL7 EXPRESSION TAG SEQADV 2L3N GLY A 57 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 58 UNP Q96TL7 LINKER SEQADV 2L3N SER A 59 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 60 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 61 UNP Q96TL7 LINKER SEQADV 2L3N SER A 62 UNP Q96TL7 LINKER SEQADV 2L3N LYS A 63 UNP Q96TL7 LINKER SEQADV 2L3N LEU A 64 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 65 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 66 UNP Q96TL7 LINKER SEQADV 2L3N SER A 67 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 68 UNP Q96TL7 LINKER SEQADV 2L3N GLY A 69 UNP Q96TL7 LINKER SEQADV 2L3N SER A 70 UNP Q96TL7 LINKER SEQRES 1 A 104 SER VAL SER ILE LEU ARG SER SER VAL ASN HIS ARG GLU SEQRES 2 A 104 VAL ASP GLU ALA ILE ASP ASN ILE LEU ARG TYR THR ASN SEQRES 3 A 104 SER THR GLU GLN GLN PHE LEU GLU ALA MET GLU SER THR SEQRES 4 A 104 GLY GLY ARG VAL ARG ILE ALA ILE ALA LYS LEU LEU SER SEQRES 5 A 104 LYS GLN THR SER GLY GLY SER GLY GLY SER LYS LEU GLY SEQRES 6 A 104 GLY SER GLY GLY SER ARG LYS ASP LEU SER VAL LYS GLY SEQRES 7 A 104 MET LEU TYR ASP SER ASP SER GLN GLN ILE LEU ASN ARG SEQRES 8 A 104 LEU ARG GLU ARG VAL SER GLY SER THR ALA GLN SER ALA HELIX 1 1 VAL A 9 ASN A 26 1 18 HELIX 2 2 THR A 28 GLY A 40 1 13 HELIX 3 3 ARG A 42 SER A 52 1 11 HELIX 4 4 ASP A 84 SER A 99 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1