HEADER STRUCTURAL PROTEIN 21-SEP-10 2L3P TITLE STRUCTURE OF THE PROLYL CIS ISOMER OF THE CRK PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIS ISOMER OF CRK PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTO-ONCOGENE C-CRK, P38; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: BANTAM,CHICKENS; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: CRK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ADAPTER PROTEIN, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR C.G.KALODIMOS,P.SARKAR,T.SALEH,S.R.TZENG,R.BIRGE REVDAT 3 01-MAY-24 2L3P 1 REMARK REVDAT 2 05-JAN-11 2L3P 1 JRNL REVDAT 1 08-DEC-10 2L3P 0 JRNL AUTH P.SARKAR,T.SALEH,S.R.TZENG,R.B.BIRGE,C.G.KALODIMOS JRNL TITL STRUCTURAL BASIS FOR REGULATION OF THE CRK SIGNALING PROTEIN JRNL TITL 2 BY A PROLINE SWITCH. JRNL REF NAT.CHEM.BIOL. V. 7 51 2011 JRNL REFN ISSN 1552-4450 JRNL PMID 21131971 JRNL DOI 10.1038/NCHEMBIO.494 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000101917. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 295 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.140 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 RCKH, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCO; 3D HNCA; 3D HNCACB; 3D REMARK 210 HCCH-TOCSY; 3D HBHA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 254 HG1 THR A 255 1.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 224 109.82 -54.39 REMARK 500 1 PRO A 225 34.68 -75.20 REMARK 500 1 SER A 226 6.50 84.40 REMARK 500 1 PRO A 230 172.25 -56.22 REMARK 500 1 LEU A 231 99.56 -45.05 REMARK 500 1 ASN A 233 -164.11 69.30 REMARK 500 1 LEU A 234 -55.19 72.55 REMARK 500 1 GLN A 245 97.55 -171.33 REMARK 500 1 PRO A 249 -143.86 -97.64 REMARK 500 1 LYS A 254 -2.33 66.57 REMARK 500 1 THR A 255 84.35 63.60 REMARK 500 1 MET A 272 -163.04 63.90 REMARK 500 1 PHE A 287 133.86 -173.85 REMARK 500 1 THR A 290 2.75 -55.75 REMARK 500 1 HIS A 291 32.71 -155.90 REMARK 500 2 SER A 226 -1.75 162.07 REMARK 500 2 ILE A 227 43.76 -84.97 REMARK 500 2 ASN A 228 -150.51 67.92 REMARK 500 2 GLN A 245 98.75 -170.97 REMARK 500 2 PRO A 249 -143.22 -95.69 REMARK 500 2 THR A 255 86.60 59.41 REMARK 500 2 MET A 272 -159.78 68.53 REMARK 500 2 PHE A 287 133.96 -170.01 REMARK 500 2 THR A 290 1.19 -58.41 REMARK 500 2 HIS A 291 32.57 -155.44 REMARK 500 2 ASP A 296 79.31 -113.99 REMARK 500 3 PRO A 221 -171.29 -58.46 REMARK 500 3 ALA A 223 87.27 -41.77 REMARK 500 3 PRO A 225 44.51 -76.23 REMARK 500 3 PRO A 230 171.70 -52.27 REMARK 500 3 LEU A 231 98.71 -46.05 REMARK 500 3 PRO A 232 -75.97 -85.69 REMARK 500 3 ASN A 233 -171.51 71.41 REMARK 500 3 LEU A 234 -47.40 72.98 REMARK 500 3 GLN A 245 97.85 -170.34 REMARK 500 3 PRO A 249 -142.52 -96.14 REMARK 500 3 THR A 255 86.02 60.02 REMARK 500 3 MET A 272 -149.72 61.01 REMARK 500 3 PHE A 287 128.34 -171.57 REMARK 500 3 PRO A 288 153.67 -44.76 REMARK 500 3 THR A 290 2.42 -57.25 REMARK 500 3 HIS A 291 36.67 -161.61 REMARK 500 3 LEU A 295 -169.59 -123.48 REMARK 500 3 ASP A 296 -76.45 -74.62 REMARK 500 4 PRO A 221 150.71 -48.00 REMARK 500 4 GLN A 224 108.67 -59.52 REMARK 500 4 PRO A 225 28.85 -74.82 REMARK 500 4 PRO A 230 171.42 -55.28 REMARK 500 4 LEU A 231 97.99 -45.59 REMARK 500 4 ASN A 233 -168.80 69.64 REMARK 500 REMARK 500 THIS ENTRY HAS 270 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 223 GLN A 224 5 -144.38 REMARK 500 ALA A 223 GLN A 224 7 -148.05 REMARK 500 ALA A 223 GLN A 224 8 -147.96 REMARK 500 TYR A 222 ALA A 223 9 -147.62 REMARK 500 ALA A 223 GLN A 224 9 145.48 REMARK 500 ALA A 223 GLN A 224 12 -143.23 REMARK 500 ALA A 223 GLN A 224 18 -142.88 REMARK 500 PRO A 230 LEU A 231 18 144.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L3Q RELATED DB: PDB REMARK 900 RELATED ID: 2L3S RELATED DB: PDB DBREF 2L3P A 220 297 UNP Q04929 CRK_CHICK 220 297 SEQRES 1 A 78 GLY PRO TYR ALA GLN PRO SER ILE ASN THR PRO LEU PRO SEQRES 2 A 78 ASN LEU GLN ASN GLY PRO PHE TYR ALA ARG VAL ILE GLN SEQRES 3 A 78 LYS ARG VAL PRO ASN ALA TYR ASP LYS THR ALA LEU ALA SEQRES 4 A 78 LEU GLU VAL GLY GLU LEU VAL LYS VAL THR LYS ILE ASN SEQRES 5 A 78 MET SER GLY GLN TRP GLU GLY GLU CYS ASN GLY LYS ARG SEQRES 6 A 78 GLY HIS PHE PRO PHE THR HIS VAL ARG LEU LEU ASP GLN SHEET 1 A 4 PHE A 239 ARG A 242 0 SHEET 2 A 4 LEU A 264 LYS A 269 -1 O VAL A 265 N ALA A 241 SHEET 3 A 4 GLU A 277 CYS A 280 -1 O GLU A 279 N LYS A 266 SHEET 4 A 4 LYS A 283 HIS A 286 -1 O LYS A 283 N CYS A 280 CISPEP 1 GLY A 237 PRO A 238 1 3.74 CISPEP 2 GLY A 237 PRO A 238 2 1.29 CISPEP 3 GLY A 237 PRO A 238 3 -0.01 CISPEP 4 GLY A 237 PRO A 238 4 3.88 CISPEP 5 GLY A 237 PRO A 238 5 0.96 CISPEP 6 GLY A 237 PRO A 238 6 1.13 CISPEP 7 GLY A 237 PRO A 238 7 0.46 CISPEP 8 GLY A 237 PRO A 238 8 6.81 CISPEP 9 GLY A 237 PRO A 238 9 -2.24 CISPEP 10 GLY A 237 PRO A 238 10 -4.13 CISPEP 11 GLY A 237 PRO A 238 11 -1.88 CISPEP 12 GLY A 237 PRO A 238 12 1.49 CISPEP 13 GLY A 237 PRO A 238 13 -1.57 CISPEP 14 GLY A 237 PRO A 238 14 1.61 CISPEP 15 GLY A 237 PRO A 238 15 -0.88 CISPEP 16 GLY A 237 PRO A 238 16 0.94 CISPEP 17 GLY A 237 PRO A 238 17 6.30 CISPEP 18 GLY A 237 PRO A 238 18 -1.10 CISPEP 19 GLY A 237 PRO A 238 19 0.17 CISPEP 20 GLY A 237 PRO A 238 20 0.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1