HEADER TRANSCRIPTION 22-SEP-10 2L3T TITLE SOLUTION STRUCTURE OF TANDEM SH2 DOMAIN FROM SPT6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION FACTOR SPT6; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH2 DOMAIN, UNP RESIDUES 1250-1440; COMPND 5 SYNONYM: CHROMATIN ELONGATION FACTOR SPT6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SPT6, CRE2, SSN20, YGR116W, G6169; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET22B(+) KEYWDS SH2, SPT6, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.LIU,J.ZHANG,J.WU,Y.SHI REVDAT 1 15-JUN-11 2L3T 0 JRNL AUTH J.LIU JRNL TITL SOLUTION STRUCTURE OF THE TANDEM SH2 DOMAINS FROM SPT6 AND JRNL TITL 2 THEIR BINDING TO THE PHOSPHORYLATED RNA POLYMERASE II JRNL TITL 3 C-TERMINAL DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.24 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L3T COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB101921. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 0.175 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN-1, 25 MM POTASSIUM REMARK 210 PHOSPHATE-2, 150 MM SODIUM REMARK 210 CHLORIDE-3, 1 MM EDTA-4, 1 MM DTT REMARK 210 -5, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HCACO; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 2D 1H-1H NOESY; 2D 1H-1H REMARK 210 TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.24 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 1 H HIS A 2 1.42 REMARK 500 O LYS A 50 H LEU A 52 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 2 5.27 58.87 REMARK 500 1 ASP A 39 -40.19 73.66 REMARK 500 1 LEU A 48 -74.23 -95.85 REMARK 500 1 LYS A 50 -152.92 43.81 REMARK 500 1 ASP A 51 63.64 -64.74 REMARK 500 1 GLU A 62 25.20 82.07 REMARK 500 1 ASN A 77 18.68 56.75 REMARK 500 1 LYS A 106 39.97 -89.22 REMARK 500 1 VAL A 171 56.98 35.46 REMARK 500 1 HIS A 195 25.84 46.35 REMARK 500 1 HIS A 197 -92.93 51.24 REMARK 500 2 ASP A 39 -64.62 56.01 REMARK 500 2 LEU A 48 -68.74 -99.57 REMARK 500 2 ASP A 49 -153.19 -137.32 REMARK 500 2 GLU A 62 42.89 70.66 REMARK 500 2 ASN A 77 16.03 57.63 REMARK 500 2 LYS A 106 41.09 -89.87 REMARK 500 2 ASN A 137 170.83 -44.08 REMARK 500 2 VAL A 171 59.61 35.94 REMARK 500 2 HIS A 198 -128.13 -159.09 REMARK 500 3 HIS A 2 -49.98 -149.61 REMARK 500 3 PRO A 12 109.57 -58.88 REMARK 500 3 ASP A 39 -51.33 67.54 REMARK 500 3 LEU A 48 -82.08 -105.77 REMARK 500 3 GLU A 62 35.36 74.05 REMARK 500 3 ASN A 77 19.96 57.98 REMARK 500 3 LYS A 106 39.12 -87.99 REMARK 500 3 ASN A 137 -172.82 -67.56 REMARK 500 3 VAL A 171 64.52 34.74 REMARK 500 4 HIS A 2 10.71 -149.32 REMARK 500 4 ASP A 39 -54.60 72.64 REMARK 500 4 LEU A 48 -66.25 -97.27 REMARK 500 4 LYS A 106 39.70 -87.61 REMARK 500 4 VAL A 171 62.66 33.19 REMARK 500 4 HIS A 196 149.85 57.31 REMARK 500 5 HIS A 2 8.75 50.94 REMARK 500 5 ASP A 39 3.41 -57.57 REMARK 500 5 LEU A 48 -72.35 -98.00 REMARK 500 5 LYS A 50 -141.32 41.81 REMARK 500 5 LYS A 106 41.10 -94.73 REMARK 500 5 VAL A 171 51.87 37.88 REMARK 500 5 HIS A 196 160.60 57.02 REMARK 500 5 HIS A 198 81.64 40.36 REMARK 500 6 ARG A 3 23.60 -148.78 REMARK 500 6 ILE A 5 12.85 -59.94 REMARK 500 6 ASN A 6 32.70 -161.53 REMARK 500 6 ASP A 39 -50.62 64.75 REMARK 500 6 ASP A 49 -138.91 -162.89 REMARK 500 6 LYS A 50 -104.05 -53.76 REMARK 500 6 GLU A 62 52.24 72.51 REMARK 500 REMARK 500 THIS ENTRY HAS 187 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2L3T A 1 191 UNP P23615 SPT6_YEAST 1250 1440 SEQADV 2L3T LEU A 192 UNP P23615 EXPRESSION TAG SEQADV 2L3T GLU A 193 UNP P23615 EXPRESSION TAG SEQADV 2L3T HIS A 194 UNP P23615 EXPRESSION TAG SEQADV 2L3T HIS A 195 UNP P23615 EXPRESSION TAG SEQADV 2L3T HIS A 196 UNP P23615 EXPRESSION TAG SEQADV 2L3T HIS A 197 UNP P23615 EXPRESSION TAG SEQADV 2L3T HIS A 198 UNP P23615 EXPRESSION TAG SEQADV 2L3T HIS A 199 UNP P23615 EXPRESSION TAG SEQRES 1 A 199 THR HIS ARG VAL ILE ASN HIS PRO TYR TYR PHE PRO PHE SEQRES 2 A 199 ASN GLY ARG GLN ALA GLU ASP TYR LEU ARG SER LYS GLU SEQRES 3 A 199 ARG GLY GLU PHE VAL ILE ARG GLN SER SER ARG GLY ASP SEQRES 4 A 199 ASP HIS LEU VAL ILE THR TRP LYS LEU ASP LYS ASP LEU SEQRES 5 A 199 PHE GLN HIS ILE ASP ILE GLN GLU LEU GLU LYS GLU ASN SEQRES 6 A 199 PRO LEU ALA LEU GLY LYS VAL LEU ILE VAL ASP ASN GLN SEQRES 7 A 199 LYS TYR ASN ASP LEU ASP GLN ILE ILE VAL GLU TYR LEU SEQRES 8 A 199 GLN ASN LYS VAL ARG LEU LEU ASN GLU MET THR SER SER SEQRES 9 A 199 GLU LYS PHE LYS SER GLY THR LYS LYS ASP VAL VAL LYS SEQRES 10 A 199 PHE ILE GLU ASP TYR SER ARG VAL ASN PRO ASN LYS SER SEQRES 11 A 199 VAL TYR TYR PHE SER LEU ASN HIS ASP ASN PRO GLY TRP SEQRES 12 A 199 PHE TYR LEU MET PHE LYS ILE ASN ALA ASN SER LYS LEU SEQRES 13 A 199 TYR THR TRP ASN VAL LYS LEU THR ASN THR GLY TYR PHE SEQRES 14 A 199 LEU VAL ASN TYR ASN TYR PRO SER VAL ILE GLN LEU CYS SEQRES 15 A 199 ASN GLY PHE LYS THR LEU LEU LYS SER LEU GLU HIS HIS SEQRES 16 A 199 HIS HIS HIS HIS HELIX 1 1 ASN A 14 LYS A 25 1 12 HELIX 2 2 ASP A 82 SER A 103 1 22 HELIX 3 3 THR A 111 ASN A 126 1 16 HELIX 4 4 SER A 177 HIS A 195 1 19 SHEET 1 A 5 PHE A 30 GLN A 34 0 SHEET 2 A 5 HIS A 41 LYS A 47 -1 O VAL A 43 N ARG A 33 SHEET 3 A 5 PHE A 53 LEU A 61 -1 O ILE A 58 N LEU A 42 SHEET 4 A 5 VAL A 72 VAL A 75 -1 O VAL A 72 N LEU A 61 SHEET 5 A 5 GLN A 78 TYR A 80 -1 O GLN A 78 N VAL A 75 SHEET 1 B 5 VAL A 131 LEU A 136 0 SHEET 2 B 5 PHE A 144 LYS A 149 -1 O MET A 147 N TYR A 133 SHEET 3 B 5 TYR A 157 THR A 164 -1 O TRP A 159 N LEU A 146 SHEET 4 B 5 GLY A 167 LEU A 170 -1 O PHE A 169 N LYS A 162 SHEET 5 B 5 TYR A 173 TYR A 175 -1 O TYR A 173 N LEU A 170 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1