data_2L3U # _entry.id 2L3U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2L3U RCSB RCSB101922 WWPDB D_1000101922 # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2010-10-06 _pdbx_database_PDB_obs_spr.pdb_id 2L3U _pdbx_database_PDB_obs_spr.replace_pdb_id 2KPS _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.content_type _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.details unspecified 16568 BMRB 'Chemical shifts used in this structure determination' unspecified DhR29A TargetDB . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2L3U _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2010-09-23 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Barb, A.W.' 1 'Lee, H.' 2 'Belote, R.L.' 3 'Ciccosanti, C.' 4 'Hamilton, K.' 5 'Acton, T.B.' 6 'Xiao, R.' 7 'Everett, J.K.' 8 'Montelione, G.T.' 9 'Prestegard, J.H.' 10 'Northeast Structural Genomics Consortium (NESG)' 11 # _citation.id primary _citation.title 'Structures of domains I and IV from YbbR are representative of a widely distributed protein family.' _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 20 _citation.page_first 396 _citation.page_last 405 _citation.year 2011 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 21154411 _citation.pdbx_database_id_DOI 10.1002/pro.571 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Barb, A.W.' 1 primary 'Cort, J.R.' 2 primary 'Seetharaman, J.' 3 primary 'Lew, S.' 4 primary 'Lee, H.W.' 5 primary 'Acton, T.' 6 primary 'Xiao, R.' 7 primary 'Kennedy, M.A.' 8 primary 'Tong, L.' 9 primary 'Montelione, G.T.' 10 primary 'Prestegard, J.H.' 11 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'YbbR family protein' _entity.formula_weight 11269.006 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'sequence database residues 321-409' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MKTLYDLPIVLRNLPEDLVLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPDV TYTLKAKEDPLEHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MKTLYDLPIVLRNLPEDLVLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPDV TYTLKAKEDPLEHHHHHH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier DhR29A # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LYS n 1 3 THR n 1 4 LEU n 1 5 TYR n 1 6 ASP n 1 7 LEU n 1 8 PRO n 1 9 ILE n 1 10 VAL n 1 11 LEU n 1 12 ARG n 1 13 ASN n 1 14 LEU n 1 15 PRO n 1 16 GLU n 1 17 ASP n 1 18 LEU n 1 19 VAL n 1 20 LEU n 1 21 GLU n 1 22 LYS n 1 23 PRO n 1 24 LEU n 1 25 PRO n 1 26 GLU n 1 27 VAL n 1 28 SER n 1 29 VAL n 1 30 THR n 1 31 ILE n 1 32 ARG n 1 33 ALA n 1 34 TYR n 1 35 PRO n 1 36 GLU n 1 37 ILE n 1 38 LEU n 1 39 ASN n 1 40 ASN n 1 41 LEU n 1 42 THR n 1 43 LYS n 1 44 GLU n 1 45 GLN n 1 46 ILE n 1 47 SER n 1 48 LEU n 1 49 TRP n 1 50 ILE n 1 51 ASP n 1 52 ALA n 1 53 THR n 1 54 GLY n 1 55 LYS n 1 56 ALA n 1 57 VAL n 1 58 GLY n 1 59 GLU n 1 60 HIS n 1 61 THR n 1 62 VAL n 1 63 LYS n 1 64 ILE n 1 65 TYR n 1 66 TRP n 1 67 GLN n 1 68 LEU n 1 69 PRO n 1 70 ALA n 1 71 GLY n 1 72 ILE n 1 73 GLU n 1 74 MET n 1 75 VAL n 1 76 SER n 1 77 ILE n 1 78 PRO n 1 79 ASP n 1 80 VAL n 1 81 THR n 1 82 TYR n 1 83 THR n 1 84 LEU n 1 85 LYS n 1 86 ALA n 1 87 LYS n 1 88 GLU n 1 89 ASP n 1 90 PRO n 1 91 LEU n 1 92 GLU n 1 93 HIS n 1 94 HIS n 1 95 HIS n 1 96 HIS n 1 97 HIS n 1 98 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Dhaf_0833 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'DCB-2 / DSM 10664' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Desulfitobacterium hafniense' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272564 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector 'pET 21' _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code B8FX10_DESHD _struct_ref.pdbx_db_accession B8FX10 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;KTLYDLPIVLRNLPEDLVLEKPLPEVSVTIRAYPEILNNLTKEQISLWIDATGKAVGEHTVKIYWQLPAGIEMVSIPDVT YTLKAKEDP ; _struct_ref.pdbx_align_begin 321 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2L3U _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 90 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B8FX10 _struct_ref_seq.db_align_beg 321 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 409 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 90 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2L3U MET A 1 ? UNP B8FX10 ? ? 'INITIATING METHIONINE' 1 1 1 2L3U LEU A 91 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 91 2 1 2L3U GLU A 92 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 92 3 1 2L3U HIS A 93 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 93 4 1 2L3U HIS A 94 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 94 5 1 2L3U HIS A 95 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 95 6 1 2L3U HIS A 96 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 96 7 1 2L3U HIS A 97 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 97 8 1 2L3U HIS A 98 ? UNP B8FX10 ? ? 'EXPRESSION TAG' 98 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCACB' 1 3 1 '3D HN(CO)CA' 1 4 1 '3D H(CCO)NH' 1 5 1 '3D HCCH-TOCSY' 1 6 1 '3D 1H-15N NOESY' 1 7 1 '3D 1H-13C NOESY' 1 8 1 '3D HNCO' 1 9 2 '2D 1H-15N HSQC' 1 10 2 '3D HNCO' 1 11 3 '2D 1H-15N HSQC' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.2 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '1 mM [U-100% 13C; U-100% 15N] DhR29a, 200 mM sodium chloride, 10 % D2O, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '1 mM [U-13C] DhR29a, 10 % D2O, 200 mM sodium chloride, 1 mg Pf1 phage, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' '1 mM DhR29a, 200 mM sodium chloride, 10 % D2O, 7 % acrylamide, 90% H2O/10% D2O' 3 '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.field_strength 600 _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2L3U _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'refinement completed using XPLOR-NIH and 3 RDC datasets, NOE list, and dihedral angle constraints' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'back calculated data agree with experimental NOESY spectrum' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2L3U _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2L3U _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal Varian collection VNMRJ ? 1 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView ? 2 'Johnson, One Moon Scientific' 'data analysis' NMRView ? 3 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 4 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR_NIH ? 5 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 6 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2L3U _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2L3U _struct.title ;Solution Structure of Domain IV from the YbbR family protein of Desulfitobacterium hafniense: Northeast Structural Genomics Consortium target DhR29A ; _struct.pdbx_descriptor 'YbbR family protein' _struct.pdbx_model_details 'fewest violations, model 1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2L3U _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.text ;beta strand, figure eight, figure 8, Structural Genomics, PSI-Biology, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, UNKNOWN FUNCTION ; # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 34 ? ASN A 39 ? TYR A 34 ASN A 39 1 ? 6 HELX_P HELX_P2 2 THR A 42 ? ILE A 46 ? THR A 42 ILE A 46 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 1 -4.45 2 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 2 -4.32 3 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 3 -3.68 4 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 4 -4.23 5 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 5 -3.67 6 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 6 -5.75 7 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 7 -4.56 8 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 8 -2.55 9 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 9 -5.42 10 ILE 77 A . ? ILE 77 A PRO 78 A ? PRO 78 A 10 -4.89 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? C ? 2 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 10 ? ARG A 12 ? VAL A 10 ARG A 12 A 2 TRP A 49 ? ASP A 51 ? TRP A 49 ASP A 51 B 1 LEU A 18 ? LEU A 20 ? LEU A 18 LEU A 20 B 2 LEU A 84 ? ALA A 86 ? LEU A 84 ALA A 86 C 1 THR A 30 ? ARG A 32 ? THR A 30 ARG A 32 C 2 GLU A 73 ? SER A 76 ? GLU A 73 SER A 76 D 1 THR A 61 ? VAL A 62 ? THR A 61 VAL A 62 D 2 VAL A 80 ? THR A 81 ? VAL A 80 THR A 81 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ARG A 12 ? N ARG A 12 O ILE A 50 ? O ILE A 50 B 1 2 N VAL A 19 ? N VAL A 19 O LYS A 85 ? O LYS A 85 C 1 2 N THR A 30 ? N THR A 30 O VAL A 75 ? O VAL A 75 D 1 2 N VAL A 62 ? N VAL A 62 O VAL A 80 ? O VAL A 80 # _atom_sites.entry_id 2L3U _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 THR 3 3 3 THR THR A . n A 1 4 LEU 4 4 4 LEU LEU A . n A 1 5 TYR 5 5 5 TYR TYR A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 LEU 7 7 7 LEU LEU A . n A 1 8 PRO 8 8 8 PRO PRO A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ARG 12 12 12 ARG ARG A . n A 1 13 ASN 13 13 13 ASN ASN A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 PRO 15 15 15 PRO PRO A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ASP 17 17 17 ASP ASP A . n A 1 18 LEU 18 18 18 LEU LEU A . n A 1 19 VAL 19 19 19 VAL VAL A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 PRO 23 23 23 PRO PRO A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 PRO 25 25 25 PRO PRO A . n A 1 26 GLU 26 26 26 GLU GLU A . n A 1 27 VAL 27 27 27 VAL VAL A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 THR 30 30 30 THR THR A . n A 1 31 ILE 31 31 31 ILE ILE A . n A 1 32 ARG 32 32 32 ARG ARG A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 TYR 34 34 34 TYR TYR A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 GLU 36 36 36 GLU GLU A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 ASN 39 39 39 ASN ASN A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 LEU 41 41 41 LEU LEU A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 ILE 46 46 46 ILE ILE A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 TRP 49 49 49 TRP TRP A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 THR 53 53 53 THR THR A . n A 1 54 GLY 54 54 54 GLY GLY A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 GLU 59 59 59 GLU GLU A . n A 1 60 HIS 60 60 60 HIS HIS A . n A 1 61 THR 61 61 61 THR THR A . n A 1 62 VAL 62 62 62 VAL VAL A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 TRP 66 66 66 TRP TRP A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 LEU 68 68 68 LEU LEU A . n A 1 69 PRO 69 69 69 PRO PRO A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 GLY 71 71 71 GLY GLY A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 MET 74 74 74 MET MET A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 ILE 77 77 77 ILE ILE A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 ASP 79 79 79 ASP ASP A . n A 1 80 VAL 80 80 80 VAL VAL A . n A 1 81 THR 81 81 81 THR THR A . n A 1 82 TYR 82 82 82 TYR TYR A . n A 1 83 THR 83 83 83 THR THR A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 LYS 87 87 87 LYS LYS A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ASP 89 89 89 ASP ASP A . n A 1 90 PRO 90 90 90 PRO PRO A . n A 1 91 LEU 91 91 91 LEU LEU A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 HIS 93 93 93 HIS HIS A . n A 1 94 HIS 94 94 94 HIS HIS A . n A 1 95 HIS 95 95 95 HIS HIS A . n A 1 96 HIS 96 96 96 HIS HIS A . n A 1 97 HIS 97 97 97 HIS HIS A . n A 1 98 HIS 98 98 98 HIS HIS A . n # _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center NESG _pdbx_SG_project.project_name PSI:Biology # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2010-10-06 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-02-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Structure summary' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id DhR29a-1 1 ? mM '[U-100% 13C; U-100% 15N]' 1 'sodium chloride-2' 200 ? mM ? 1 D2O-3 10 ? % ? 1 DhR29a-4 1 ? mM '[U-13C]' 2 D2O-5 10 ? % ? 2 'sodium chloride-6' 200 ? mM ? 2 'Pf1 phage-7' 1 ? mg/mL ? 2 DhR29a-8 1 ? mM ? 3 'sodium chloride-9' 200 ? mM ? 3 D2O-10 10 ? % ? 3 acrylamide-11 7 ? % ? 3 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A THR 53 ? ? H A LYS 55 ? ? 1.48 2 3 O A THR 53 ? ? H A LYS 55 ? ? 1.59 3 6 O A THR 53 ? ? H A LYS 55 ? ? 1.59 4 8 O A THR 53 ? ? H A LYS 55 ? ? 1.34 5 9 O A THR 53 ? ? H A LYS 55 ? ? 1.48 6 10 O A THR 53 ? ? H A LYS 55 ? ? 1.49 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 3 ? ? -162.94 -21.58 2 1 TYR A 5 ? ? 48.83 80.20 3 1 LEU A 7 ? ? 60.18 151.74 4 1 ALA A 70 ? ? -166.79 -148.30 5 1 VAL A 75 ? ? -59.79 -72.82 6 1 ILE A 77 ? ? 58.95 173.82 7 1 ASP A 89 ? ? -46.42 110.00 8 1 GLU A 92 ? ? 62.49 138.61 9 1 HIS A 93 ? ? -159.05 -55.97 10 1 HIS A 95 ? ? 56.72 107.35 11 1 HIS A 97 ? ? 57.15 165.68 12 2 LEU A 4 ? ? -150.77 33.95 13 2 TYR A 5 ? ? -154.87 33.85 14 2 LEU A 7 ? ? 52.81 83.63 15 2 LEU A 24 ? ? -41.15 151.21 16 2 GLU A 26 ? ? 59.68 130.60 17 2 TRP A 66 ? ? 54.72 123.85 18 2 ALA A 70 ? ? -167.23 -157.45 19 2 VAL A 75 ? ? -60.28 -75.66 20 2 ILE A 77 ? ? 60.29 171.54 21 2 GLU A 88 ? ? -165.29 68.60 22 2 HIS A 96 ? ? 51.32 97.48 23 2 HIS A 97 ? ? -59.71 93.88 24 3 TYR A 5 ? ? -171.05 -34.88 25 3 LEU A 7 ? ? -164.96 57.23 26 3 PRO A 8 ? ? -74.14 -91.91 27 3 LEU A 24 ? ? -37.85 153.23 28 3 GLU A 26 ? ? 64.44 130.59 29 3 PRO A 69 ? ? -79.50 45.69 30 3 ALA A 70 ? ? -161.82 -144.50 31 3 VAL A 75 ? ? -60.32 -80.93 32 3 ILE A 77 ? ? 61.61 170.20 33 3 GLU A 88 ? ? -166.89 76.67 34 3 HIS A 95 ? ? 55.53 71.85 35 3 HIS A 97 ? ? 55.01 17.77 36 4 THR A 3 ? ? 50.47 16.99 37 4 TYR A 5 ? ? -60.33 91.69 38 4 PRO A 8 ? ? -67.07 -85.39 39 4 ALA A 70 ? ? -168.01 -154.71 40 4 VAL A 75 ? ? -60.99 -81.28 41 4 ILE A 77 ? ? 60.58 173.22 42 4 GLU A 88 ? ? -165.44 22.46 43 4 GLU A 92 ? ? -91.92 -81.36 44 5 TYR A 5 ? ? 53.51 -175.15 45 5 LEU A 7 ? ? 53.60 71.76 46 5 GLU A 26 ? ? 60.55 130.72 47 5 TRP A 66 ? ? 59.93 130.66 48 5 ALA A 70 ? ? -151.51 -154.82 49 5 VAL A 75 ? ? -60.25 -72.70 50 5 ILE A 77 ? ? 60.13 171.29 51 5 GLU A 88 ? ? -156.91 16.22 52 5 GLU A 92 ? ? -59.97 -77.76 53 5 HIS A 96 ? ? 52.91 92.85 54 5 HIS A 97 ? ? -167.39 -57.80 55 6 LYS A 2 ? ? 54.86 -162.91 56 6 LEU A 7 ? ? 58.80 103.41 57 6 PRO A 8 ? ? -46.80 162.80 58 6 PRO A 23 ? ? -46.05 155.04 59 6 TYR A 65 ? ? -68.07 91.44 60 6 VAL A 75 ? ? -60.21 -81.25 61 6 ILE A 77 ? ? 58.25 177.88 62 6 HIS A 93 ? ? 52.31 87.08 63 6 HIS A 96 ? ? -169.12 -54.61 64 7 LEU A 4 ? ? -65.54 -74.01 65 7 TYR A 5 ? ? -174.01 14.31 66 7 LEU A 7 ? ? 57.54 74.93 67 7 PRO A 8 ? ? -56.35 -153.47 68 7 PRO A 23 ? ? -47.63 84.37 69 7 LEU A 24 ? ? 28.94 158.31 70 7 GLU A 26 ? ? 73.11 132.13 71 7 TRP A 66 ? ? 52.89 144.02 72 7 PRO A 69 ? ? -28.81 111.06 73 7 ALA A 70 ? ? -62.09 77.35 74 7 VAL A 75 ? ? -61.09 -80.16 75 7 ILE A 77 ? ? 55.92 -179.93 76 7 GLU A 88 ? ? -164.94 85.49 77 7 GLU A 92 ? ? -61.65 91.60 78 7 HIS A 95 ? ? -168.06 -10.26 79 7 HIS A 97 ? ? 55.04 -175.38 80 8 LYS A 2 ? ? -160.99 -7.36 81 8 LEU A 4 ? ? -67.30 -157.65 82 8 LEU A 7 ? ? 14.52 72.23 83 8 PRO A 8 ? ? -81.77 -87.39 84 8 ASN A 13 ? ? 73.74 -18.14 85 8 LEU A 14 ? ? -23.32 95.66 86 8 PRO A 15 ? ? -45.29 156.04 87 8 LEU A 24 ? ? -38.67 151.88 88 8 GLU A 26 ? ? 64.23 133.39 89 8 PRO A 69 ? ? -31.97 118.35 90 8 ALA A 70 ? ? -63.64 69.81 91 8 VAL A 75 ? ? -61.46 -76.10 92 8 ILE A 77 ? ? 57.22 176.53 93 8 GLU A 88 ? ? -166.37 88.47 94 8 HIS A 93 ? ? 58.83 -76.08 95 8 HIS A 95 ? ? 54.23 85.58 96 9 THR A 3 ? ? -66.41 94.28 97 9 LEU A 7 ? ? 55.24 73.49 98 9 ASN A 13 ? ? 72.95 -15.21 99 9 LEU A 14 ? ? -24.10 91.30 100 9 PRO A 23 ? ? -48.28 156.96 101 9 GLU A 26 ? ? 64.02 132.47 102 9 TRP A 66 ? ? 61.57 127.05 103 9 VAL A 75 ? ? -60.74 -75.90 104 9 ILE A 77 ? ? 57.58 178.92 105 9 GLU A 88 ? ? -167.28 83.28 106 9 HIS A 93 ? ? -167.33 99.19 107 9 HIS A 95 ? ? -165.46 -47.47 108 10 LEU A 4 ? ? 61.15 145.10 109 10 LEU A 7 ? ? 13.73 74.30 110 10 PRO A 23 ? ? -51.45 81.83 111 10 LEU A 24 ? ? -8.19 148.88 112 10 TRP A 66 ? ? 59.64 116.32 113 10 PRO A 69 ? ? -83.03 -152.42 114 10 ALA A 70 ? ? 73.74 -169.53 115 10 VAL A 75 ? ? -59.23 -79.14 116 10 ILE A 77 ? ? 56.10 179.38 117 10 GLU A 88 ? ? -100.41 -103.27 118 10 LEU A 91 ? ? -80.52 -74.66 119 10 GLU A 92 ? ? -169.46 -66.20 120 10 HIS A 96 ? ? 51.32 95.66 #