HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-SEP-10 2L3U TITLE SOLUTION STRUCTURE OF DOMAIN IV FROM THE YBBR FAMILY PROTEIN OF TITLE 2 DESULFITOBACTERIUM HAFNIENSE: NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET DHR29A COMPND MOL_ID: 1; COMPND 2 MOLECULE: YBBR FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 321-409; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DESULFITOBACTERIUM HAFNIENSE; SOURCE 3 ORGANISM_TAXID: 272564; SOURCE 4 STRAIN: DCB-2 / DSM 10664; SOURCE 5 GENE: DHAF_0833; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET 21 KEYWDS BETA STRAND, FIGURE EIGHT, FIGURE 8, STRUCTURAL GENOMICS, PSI- KEYWDS 2 BIOLOGY, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR A.W.BARB,H.LEE,R.L.BELOTE,C.CICCOSANTI,K.HAMILTON,T.B.ACTON,R.XIAO, AUTHOR 2 J.K.EVERETT,G.T.MONTELIONE,J.H.PRESTEGARD,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 5 01-MAY-24 2L3U 1 REMARK SEQADV REVDAT 4 22-FEB-12 2L3U 1 VERSN KEYWDS REVDAT 3 16-FEB-11 2L3U 1 JRNL REVDAT 2 19-JAN-11 2L3U 1 TITLE REVDAT 1 06-OCT-10 2L3U 0 SPRSDE 06-OCT-10 2L3U 2KPS JRNL AUTH A.W.BARB,J.R.CORT,J.SEETHARAMAN,S.LEW,H.W.LEE,T.ACTON, JRNL AUTH 2 R.XIAO,M.A.KENNEDY,L.TONG,G.T.MONTELIONE,J.H.PRESTEGARD JRNL TITL STRUCTURES OF DOMAINS I AND IV FROM YBBR ARE REPRESENTATIVE JRNL TITL 2 OF A WIDELY DISTRIBUTED PROTEIN FAMILY. JRNL REF PROTEIN SCI. V. 20 396 2011 JRNL REFN ISSN 0961-8368 JRNL PMID 21154411 JRNL DOI 10.1002/PRO.571 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMRJ, X-PLOR NIH REMARK 3 AUTHORS : VARIAN (VNMRJ), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT COMPLETED USING XPLOR-NIH REMARK 3 AND 3 RDC DATASETS, NOE LIST, AND DIHEDRAL ANGLE CONSTRAINTS REMARK 4 REMARK 4 2L3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-10. REMARK 100 THE DEPOSITION ID IS D_1000101922. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 DHR29A, 200 MM SODIUM CHLORIDE, REMARK 210 10 % D2O, 90% H2O/10% D2O; 1 MM REMARK 210 [U-13C] DHR29A, 10 % D2O, 200 MM REMARK 210 SODIUM CHLORIDE, 1 MG PF1 PHAGE, REMARK 210 90% H2O/10% D2O; 1 MM DHR29A, REMARK 210 200 MM SODIUM CHLORIDE, 10 % D2O, REMARK 210 7 % ACRYLAMIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 HN(CO)CA; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW, CYANA, NMRPIPE REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 53 H LYS A 55 1.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 -21.58 -162.94 REMARK 500 1 TYR A 5 80.20 48.83 REMARK 500 1 LEU A 7 151.74 60.18 REMARK 500 1 ALA A 70 -148.30 -166.79 REMARK 500 1 VAL A 75 -72.82 -59.79 REMARK 500 1 ILE A 77 173.82 58.95 REMARK 500 1 ASP A 89 110.00 -46.42 REMARK 500 1 GLU A 92 138.61 62.49 REMARK 500 1 HIS A 93 -55.97 -159.05 REMARK 500 1 HIS A 95 107.35 56.72 REMARK 500 1 HIS A 97 165.68 57.15 REMARK 500 2 LEU A 4 33.95 -150.77 REMARK 500 2 TYR A 5 33.85 -154.87 REMARK 500 2 LEU A 7 83.63 52.81 REMARK 500 2 LEU A 24 151.21 -41.15 REMARK 500 2 GLU A 26 130.60 59.68 REMARK 500 2 TRP A 66 123.85 54.72 REMARK 500 2 ALA A 70 -157.45 -167.23 REMARK 500 2 VAL A 75 -75.66 -60.28 REMARK 500 2 ILE A 77 171.54 60.29 REMARK 500 2 GLU A 88 68.60 -165.29 REMARK 500 2 HIS A 96 97.48 51.32 REMARK 500 2 HIS A 97 93.88 -59.71 REMARK 500 3 TYR A 5 -34.88 -171.05 REMARK 500 3 LEU A 7 57.23 -164.96 REMARK 500 3 PRO A 8 -91.91 -74.14 REMARK 500 3 LEU A 24 153.23 -37.85 REMARK 500 3 GLU A 26 130.59 64.44 REMARK 500 3 PRO A 69 45.69 -79.50 REMARK 500 3 ALA A 70 -144.50 -161.82 REMARK 500 3 VAL A 75 -80.93 -60.32 REMARK 500 3 ILE A 77 170.20 61.61 REMARK 500 3 GLU A 88 76.67 -166.89 REMARK 500 3 HIS A 95 71.85 55.53 REMARK 500 3 HIS A 97 17.77 55.01 REMARK 500 4 THR A 3 16.99 50.47 REMARK 500 4 TYR A 5 91.69 -60.33 REMARK 500 4 PRO A 8 -85.39 -67.07 REMARK 500 4 ALA A 70 -154.71 -168.01 REMARK 500 4 VAL A 75 -81.28 -60.99 REMARK 500 4 ILE A 77 173.22 60.58 REMARK 500 4 GLU A 88 22.46 -165.44 REMARK 500 4 GLU A 92 -81.36 -91.92 REMARK 500 5 TYR A 5 -175.15 53.51 REMARK 500 5 LEU A 7 71.76 53.60 REMARK 500 5 GLU A 26 130.72 60.55 REMARK 500 5 TRP A 66 130.66 59.93 REMARK 500 5 ALA A 70 -154.82 -151.51 REMARK 500 5 VAL A 75 -72.70 -60.25 REMARK 500 5 ILE A 77 171.29 60.13 REMARK 500 REMARK 500 THIS ENTRY HAS 120 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16568 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFTS USED IN THIS STRUCTURE DETERMINATION REMARK 900 RELATED ID: DHR29A RELATED DB: TARGETDB DBREF 2L3U A 2 90 UNP B8FX10 B8FX10_DESHD 321 409 SEQADV 2L3U MET A 1 UNP B8FX10 INITIATING METHIONINE SEQADV 2L3U LEU A 91 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U GLU A 92 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U HIS A 93 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U HIS A 94 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U HIS A 95 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U HIS A 96 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U HIS A 97 UNP B8FX10 EXPRESSION TAG SEQADV 2L3U HIS A 98 UNP B8FX10 EXPRESSION TAG SEQRES 1 A 98 MET LYS THR LEU TYR ASP LEU PRO ILE VAL LEU ARG ASN SEQRES 2 A 98 LEU PRO GLU ASP LEU VAL LEU GLU LYS PRO LEU PRO GLU SEQRES 3 A 98 VAL SER VAL THR ILE ARG ALA TYR PRO GLU ILE LEU ASN SEQRES 4 A 98 ASN LEU THR LYS GLU GLN ILE SER LEU TRP ILE ASP ALA SEQRES 5 A 98 THR GLY LYS ALA VAL GLY GLU HIS THR VAL LYS ILE TYR SEQRES 6 A 98 TRP GLN LEU PRO ALA GLY ILE GLU MET VAL SER ILE PRO SEQRES 7 A 98 ASP VAL THR TYR THR LEU LYS ALA LYS GLU ASP PRO LEU SEQRES 8 A 98 GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 TYR A 34 ASN A 39 1 6 HELIX 2 2 THR A 42 ILE A 46 5 5 SHEET 1 A 2 VAL A 10 ARG A 12 0 SHEET 2 A 2 TRP A 49 ASP A 51 1 O ILE A 50 N ARG A 12 SHEET 1 B 2 LEU A 18 LEU A 20 0 SHEET 2 B 2 LEU A 84 ALA A 86 -1 O LYS A 85 N VAL A 19 SHEET 1 C 2 THR A 30 ARG A 32 0 SHEET 2 C 2 GLU A 73 SER A 76 -1 O VAL A 75 N THR A 30 SHEET 1 D 2 THR A 61 VAL A 62 0 SHEET 2 D 2 VAL A 80 THR A 81 -1 O VAL A 80 N VAL A 62 CISPEP 1 ILE A 77 PRO A 78 1 -4.45 CISPEP 2 ILE A 77 PRO A 78 2 -4.32 CISPEP 3 ILE A 77 PRO A 78 3 -3.68 CISPEP 4 ILE A 77 PRO A 78 4 -4.23 CISPEP 5 ILE A 77 PRO A 78 5 -3.67 CISPEP 6 ILE A 77 PRO A 78 6 -5.75 CISPEP 7 ILE A 77 PRO A 78 7 -4.56 CISPEP 8 ILE A 77 PRO A 78 8 -2.55 CISPEP 9 ILE A 77 PRO A 78 9 -5.42 CISPEP 10 ILE A 77 PRO A 78 10 -4.89 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1