HEADER SIGNALING PROTEIN 07-OCT-10 2L4K TITLE WATER REFINED SOLUTION STRUCTURE OF THE HUMAN GRB7-SH2 DOMAIN IN TITLE 2 COMPLEX WITH THE 10 AMINO ACID PEPTIDE PY1139 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROWTH FACTOR RECEPTOR-BOUND PROTEIN 7; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 415-532; COMPND 5 SYNONYM: GRB7 ADAPTER PROTEIN, EPIDERMAL GROWTH FACTOR RECEPTOR GRB- COMPND 6 7, B47; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: RECEPTOR TYROSINE-PROTEIN KINASE ERBB-2; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 1135-1144; COMPND 12 SYNONYM: P185ERBB2, TYROSINE KINASE-TYPE CELL SURFACE RECEPTOR HER2, COMPND 13 METASTATIC LYMPH NODE GENE 19 PROTEIN, MLN 19; COMPND 14 EC: 2.7.10.1; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GRB7; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-2T; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS GRB7, SH2 DOMAIN, ERBB2 RECEPTOR, WATER REFINEMENT, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR S.C.PIAS,M.IVANCIC,P.J.BRESCIA,D.L.JOHNSON,D.E.SMITH,R.J.DALY, AUTHOR 2 B.A.LYONS REVDAT 3 03-OCT-12 2L4K 1 JRNL REVDAT 2 25-JUL-12 2L4K 1 JRNL VERSN REVDAT 1 17-NOV-10 2L4K 0 JRNL AUTH S.C.PIAS,D.L.JOHNSON,D.E.SMITH,B.A.LYONS JRNL TITL WATER-REFINED SOLUTION STRUCTURE OF THE HUMAN GRB7-SH2 JRNL TITL 2 DOMAIN IN COMPLEX WITH THE ERBB2 RECEPTOR PEPTIDE PY1139. JRNL REF PROTEIN PEPT.LETT. V. 19 832 2012 JRNL REFN ISSN 0929-8665 JRNL PMID 22702899 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.IVANCIC,R.J.DALY,B.A.LYONS REMARK 1 TITL SOLUTION STRUCTURE OF THE HUMAN GRB7-SH2 DOMAIN/ERBB2 REMARK 1 TITL 2 PEPTIDE COMPLEX AND STRUCTURAL BASIS FOR GRB7 BINDING TO REMARK 1 TITL 3 ERBB2. REMARK 1 REF J.BIOMOL.NMR V. 27 205 2003 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 12975581 REMARK 1 DOI 10.1023/A:1025498409113 REMARK 1 REFERENCE 2 REMARK 1 AUTH P.J.BRESCIA,M.IVANCIC,B.A.LYONS REMARK 1 TITL ASSIGNMENT OF BACKBONE 1H, 13C, AND 15N RESONANCES OF HUMAN REMARK 1 TITL 2 GRB7-SH2 DOMAIN IN COMPLEX WITH A PHOSPHORYLATED PEPTIDE REMARK 1 TITL 3 LIGAND. REMARK 1 REF J.BIOMOL.NMR V. 23 77 2002 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 12061724 REMARK 1 DOI 10.1023/A:1015345302576 REMARK 1 REFERENCE 3 REMARK 1 REFN ISSN 0925-2738 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: Refinement with AMBER software, using REMARK 3 implicit water (generalized Born model) and ff99SB force field, REMARK 3 Structure calculation with CNS software, in vacuum REMARK 4 REMARK 4 2L4K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB101948. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6-0.8 MM [U-100% 13C; U-100% REMARK 210 15N] GRB7-SH2 DOMAIN-1, 0.6-0.8 REMARK 210 MM [U-100% 13C; U-100% 15N] REMARK 210 PY1139 PEPTIDE-2, 52.2 MM ACETIC REMARK 210 ACID-3, 100 MM SODIUM CHLORIDE-4, REMARK 210 5 MM DTT-5, 1 MM EDTA-6, 0.9 MM REMARK 210 SODIUM AZIDE-7, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCA; 3D HN(CO)CA; 3D HNCACB; REMARK 210 3D CBCA(CO)NH; 2D 15N HSQC; CN REMARK 210 NOESY-HSQC; 3D 15N NOESY-HSQC; 3D REMARK 210 13C NOESY-HSQC; 3D TOCSY-HSQC; 2D REMARK 210 HMQC-J; 3D CBCANH; 3D HCCH-TOCSY; REMARK 210 13C, 15N→12C, 14N NOESY; REMARK 210 12C, 14N→13C, 15N NOESY; REMARK 210 12C, 14N→12C, 14N NOESY; REMARK 210 12C, 14N→12C, 14N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS SIMULATED REMARK 210 ANNEALING, SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY AND THE FEWEST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE DIMERIC ANNOTATION IN REMARK 350 REFERS TO THE TWO REMARK 300 CHAINS OF THE ASSEMBLY (PROTEIN DOMAIN AND LIGAND) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 25 O1P PTR B 1139 1.47 REMARK 500 HG SER A 48 O2P PTR B 1139 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 GLU A 47 CD GLU A 47 OE2 0.102 REMARK 500 1 GLU A 74 CD GLU A 74 OE2 0.105 REMARK 500 2 GLU A 47 CD GLU A 47 OE2 0.107 REMARK 500 2 GLU A 74 CD GLU A 74 OE2 0.099 REMARK 500 3 GLU A 47 CD GLU A 47 OE2 0.102 REMARK 500 3 GLU A 74 CD GLU A 74 OE2 0.108 REMARK 500 4 GLU A 47 CD GLU A 47 OE2 0.098 REMARK 500 4 GLU A 74 CD GLU A 74 OE2 0.107 REMARK 500 5 GLU A 47 CD GLU A 47 OE2 0.109 REMARK 500 5 GLU A 74 CD GLU A 74 OE2 0.107 REMARK 500 6 GLU A 47 CD GLU A 47 OE2 0.107 REMARK 500 6 GLU A 74 CD GLU A 74 OE2 0.101 REMARK 500 7 GLU A 47 CD GLU A 47 OE2 0.107 REMARK 500 7 GLU A 74 CD GLU A 74 OE2 0.107 REMARK 500 8 GLU A 47 CD GLU A 47 OE2 0.099 REMARK 500 8 GLU A 74 CD GLU A 74 OE2 0.108 REMARK 500 9 GLU A 47 CD GLU A 47 OE2 0.101 REMARK 500 9 GLU A 74 CD GLU A 74 OE2 0.101 REMARK 500 10 GLU A 47 CD GLU A 47 OE2 0.100 REMARK 500 10 GLU A 74 CD GLU A 74 OE2 0.107 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 TYR A 68 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 1 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 PRO B1135 CA - N - CD ANGL. DEV. = -8.7 DEGREES REMARK 500 1 ASN B1141 CB - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 1 ASN B1141 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 1 ASN B1141 C - N - CA ANGL. DEV. = 17.6 DEGREES REMARK 500 2 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 2 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 PRO B1135 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 2 ASN B1141 N - CA - C ANGL. DEV. = -18.8 DEGREES REMARK 500 2 ASN B1141 C - N - CA ANGL. DEV. = 22.8 DEGREES REMARK 500 3 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 3 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 3 PRO B1135 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 3 VAL B1140 CG1 - CB - CG2 ANGL. DEV. = -12.5 DEGREES REMARK 500 4 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 6.5 DEGREES REMARK 500 4 ARG A 112 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 4 ARG A 117 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ASN B1141 CB - CA - C ANGL. DEV. = 12.3 DEGREES REMARK 500 5 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 5 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 5 PRO B1135 CA - N - CD ANGL. DEV. = -9.1 DEGREES REMARK 500 5 ASN B1141 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 6 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 6 PRO B1135 CA - N - CD ANGL. DEV. = -9.1 DEGREES REMARK 500 7 ARG A 26 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 7 ARG A 46 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 7 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 7 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 7 HIS A 61 CB - CA - C ANGL. DEV. = 12.9 DEGREES REMARK 500 7 TYR A 68 CB - CG - CD2 ANGL. DEV. = -4.6 DEGREES REMARK 500 7 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 7 PRO B1135 CA - N - CD ANGL. DEV. = -9.4 DEGREES REMARK 500 7 VAL B1140 CA - CB - CG1 ANGL. DEV. = 12.4 DEGREES REMARK 500 7 PRO B1143 C - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 8 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 8 ARG A 104 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 8 PRO B1135 CA - N - CD ANGL. DEV. = -9.7 DEGREES REMARK 500 8 VAL B1140 CA - CB - CG1 ANGL. DEV. = 10.5 DEGREES REMARK 500 8 GLN B1142 C - N - CA ANGL. DEV. = 15.5 DEGREES REMARK 500 9 ARG A 46 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 9 ARG A 50 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 9 LEU A 69 CB - CG - CD1 ANGL. DEV. = 16.0 DEGREES REMARK 500 9 MET A 83 C - N - CA ANGL. DEV. = 15.6 DEGREES REMARK 500 9 ARG A 89 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 56 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 23 47.62 -145.86 REMARK 500 1 SER A 25 153.37 -47.89 REMARK 500 1 VAL A 45 79.65 -119.06 REMARK 500 1 GLU A 47 -156.33 -142.75 REMARK 500 1 ARG A 50 -61.67 -99.78 REMARK 500 1 HIS A 61 -165.88 -113.41 REMARK 500 1 GLN A 63 -27.02 -146.44 REMARK 500 1 ILE A 70 -42.74 -140.66 REMARK 500 1 ARG A 78 -130.77 -128.22 REMARK 500 1 MET A 83 144.31 -29.81 REMARK 500 1 GLN A 87 53.24 -97.44 REMARK 500 1 THR A 88 20.03 -79.25 REMARK 500 1 ARG A 89 43.07 -39.64 REMARK 500 1 CYS A 109 -43.50 -130.33 REMARK 500 1 GLU B1138 -92.62 -81.93 REMARK 500 1 PTR B1139 -167.36 -106.22 REMARK 500 1 ASN B1141 -27.80 122.66 REMARK 500 1 GLN B1142 -136.87 -130.69 REMARK 500 2 LEU A 18 0.45 -58.21 REMARK 500 2 ARG A 23 47.13 -145.36 REMARK 500 2 ILE A 24 81.27 -150.42 REMARK 500 2 LEU A 32 -62.28 -92.16 REMARK 500 2 ASP A 40 -7.02 -55.15 REMARK 500 2 GLU A 47 -149.73 -142.87 REMARK 500 2 ARG A 50 -70.46 -98.58 REMARK 500 2 CYS A 60 69.27 -119.17 REMARK 500 2 GLN A 63 -27.99 -145.94 REMARK 500 2 TYR A 68 59.85 -97.47 REMARK 500 2 ILE A 70 -29.39 -140.71 REMARK 500 2 PRO A 72 -159.35 -87.85 REMARK 500 2 ARG A 78 -125.66 -118.88 REMARK 500 2 SER A 82 -141.45 -150.88 REMARK 500 2 ASP A 85 57.39 -140.54 REMARK 500 2 GLN A 87 49.15 -142.52 REMARK 500 2 ARG A 89 16.17 -39.73 REMARK 500 2 LEU A 107 -59.10 -29.62 REMARK 500 2 CYS A 109 -140.63 -103.28 REMARK 500 2 ALA A 119 34.77 -74.67 REMARK 500 2 GLU B1138 -95.16 -94.00 REMARK 500 2 PTR B1139 -155.90 -92.94 REMARK 500 2 VAL B1140 118.95 -165.67 REMARK 500 2 ASN B1141 -47.94 158.86 REMARK 500 3 ILE A 24 67.50 -104.48 REMARK 500 3 SER A 25 152.18 -46.45 REMARK 500 3 GLU A 47 -158.16 -142.89 REMARK 500 3 ARG A 50 -63.81 -98.25 REMARK 500 3 CYS A 60 65.55 -117.03 REMARK 500 3 GLN A 63 -43.72 -150.54 REMARK 500 3 TYR A 68 65.64 -107.53 REMARK 500 3 ILE A 70 -36.87 -141.42 REMARK 500 REMARK 500 THIS ENTRY HAS 186 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 107 PRO A 108 1 -129.17 REMARK 500 GLN B 1142 PRO B 1143 1 75.06 REMARK 500 GLN B 1142 PRO B 1143 4 149.56 REMARK 500 LEU A 107 PRO A 108 5 -130.73 REMARK 500 GLN B 1142 PRO B 1143 7 -126.24 REMARK 500 GLN B 1142 PRO B 1143 9 146.38 REMARK 500 GLN B 1142 PRO B 1143 10 141.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 46 0.10 SIDE CHAIN REMARK 500 2 ARG A 46 0.12 SIDE CHAIN REMARK 500 3 ARG A 46 0.12 SIDE CHAIN REMARK 500 5 ARG A 46 0.13 SIDE CHAIN REMARK 500 6 ARG A 26 0.10 SIDE CHAIN REMARK 500 6 ARG A 46 0.27 SIDE CHAIN REMARK 500 8 TYR A 68 0.09 SIDE CHAIN REMARK 500 9 ARG A 46 0.09 SIDE CHAIN REMARK 500 10 ARG A 46 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 1 LEU A 62 22.7 L L OUTSIDE RANGE REMARK 500 1 THR A 88 20.8 L L OUTSIDE RANGE REMARK 500 2 LEU A 62 21.8 L L OUTSIDE RANGE REMARK 500 2 PHE A 81 23.2 L L OUTSIDE RANGE REMARK 500 2 THR A 88 20.2 L L OUTSIDE RANGE REMARK 500 2 PTR B1139 23.0 L L OUTSIDE RANGE REMARK 500 3 LEU A 62 24.2 L L OUTSIDE RANGE REMARK 500 3 PHE A 81 21.5 L L OUTSIDE RANGE REMARK 500 3 THR A 88 20.9 L L OUTSIDE RANGE REMARK 500 3 PTR B1139 20.0 L L OUTSIDE RANGE REMARK 500 4 LEU A 62 21.1 L L OUTSIDE RANGE REMARK 500 4 THR A 88 18.7 L L OUTSIDE RANGE REMARK 500 5 LEU A 62 22.1 L L OUTSIDE RANGE REMARK 500 5 THR A 88 20.9 L L OUTSIDE RANGE REMARK 500 6 LEU A 62 21.9 L L OUTSIDE RANGE REMARK 500 6 THR A 88 21.7 L L OUTSIDE RANGE REMARK 500 6 PTR B1139 25.0 L L OUTSIDE RANGE REMARK 500 7 THR A 88 20.6 L L OUTSIDE RANGE REMARK 500 8 LEU A 62 21.2 L L OUTSIDE RANGE REMARK 500 8 THR A 88 19.7 L L OUTSIDE RANGE REMARK 500 9 LEU A 62 21.8 L L OUTSIDE RANGE REMARK 500 9 THR A 88 21.8 L L OUTSIDE RANGE REMARK 500 9 PTR B1139 19.5 L L OUTSIDE RANGE REMARK 500 10 LEU A 62 20.1 L L OUTSIDE RANGE REMARK 500 10 THR A 88 21.2 L L OUTSIDE RANGE REMARK 500 10 PTR B1139 15.7 L L OUTSIDE RANGE REMARK 500 10 VAL B1140 24.8 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QMS RELATED DB: PDB REMARK 900 LIGAND-FREE CRYSTAL STRUCTURE OF THE GRB7-SH2 DOMAIN REMARK 900 RELATED ID: 1MW4 RELATED DB: PDB REMARK 900 ORIGINAL GRB7-SH2/PY1139 COMPLEX SOLUTION STRUCTURE, PRIOR REMARK 900 TO WATER REFINEMENT REMARK 900 RELATED ID: 5288 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFT DATA AND NMR RESTRAINTS (GRB7-SH2/PY1139 REMARK 900 COMPLEX) DBREF 2L4K A 3 120 UNP Q14451 GRB7_HUMAN 415 532 DBREF 2L4K B 1135 1144 UNP P04626 ERBB2_HUMAN 1135 1144 SEQADV 2L4K GLY A 1 UNP Q14451 EXPRESSION TAG SEQADV 2L4K SER A 2 UNP Q14451 EXPRESSION TAG SEQRES 1 A 120 GLY SER PRO ALA SER GLY THR SER LEU SER ALA ALA ILE SEQRES 2 A 120 HIS ARG THR GLN LEU TRP PHE HIS GLY ARG ILE SER ARG SEQRES 3 A 120 GLU GLU SER GLN ARG LEU ILE GLY GLN GLN GLY LEU VAL SEQRES 4 A 120 ASP GLY LEU PHE LEU VAL ARG GLU SER GLN ARG ASN PRO SEQRES 5 A 120 GLN GLY PHE VAL LEU SER LEU CYS HIS LEU GLN LYS VAL SEQRES 6 A 120 LYS HIS TYR LEU ILE LEU PRO SER GLU GLU GLU GLY ARG SEQRES 7 A 120 LEU TYR PHE SER MET ASP ASP GLY GLN THR ARG PHE THR SEQRES 8 A 120 ASP LEU LEU GLN LEU VAL GLU PHE HIS GLN LEU ASN ARG SEQRES 9 A 120 GLY ILE LEU PRO CYS LEU LEU ARG HIS CYS CYS THR ARG SEQRES 10 A 120 VAL ALA LEU SEQRES 1 B 10 PRO GLN PRO GLU PTR VAL ASN GLN PRO ASP MODRES 2L4K PTR B 1139 TYR O-PHOSPHOTYROSINE HET PTR B1139 24 HETNAM PTR O-PHOSPHOTYROSINE HETSYN PTR PHOSPHONOTYROSINE FORMUL 2 PTR C9 H12 N O6 P HELIX 1 1 THR A 16 PHE A 20 5 5 HELIX 2 2 SER A 25 ILE A 33 1 9 HELIX 3 3 GLY A 34 GLN A 36 5 3 HELIX 4 4 THR A 91 HIS A 100 1 10 SHEET 1 A 2 LEU A 42 PHE A 43 0 SHEET 2 A 2 CYS A 114 CYS A 115 1 N CYS A 114 O PHE A 43 SHEET 1 B 2 LEU A 57 CYS A 60 0 SHEET 2 B 2 VAL A 65 TYR A 68 -1 O TYR A 68 N LEU A 57 SHEET 1 C 2 LEU A 71 SER A 73 0 SHEET 2 C 2 LEU A 79 TYR A 80 -1 O TYR A 80 N PRO A 72 LINK C GLU B1138 N PTR B1139 1555 1555 1.34 LINK C PTR B1139 N VAL B1140 1555 1555 1.33 CISPEP 1 GLN B 1136 PRO B 1137 1 -5.64 CISPEP 2 SER A 2 PRO A 3 4 4.86 CISPEP 3 SER A 2 PRO A 3 5 -5.88 CISPEP 4 GLN B 1136 PRO B 1137 8 -3.38 CISPEP 5 GLN B 1136 PRO B 1137 9 -6.62 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1