HEADER PROTEIN BINDING 13-OCT-10 2L4T TITLE GIP/GLUTAMINASE L PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: TAX1-BINDING PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLUTAMINASE-INTERACTING PROTEIN 3, TAX INTERACTION PROTEIN COMPND 5 1, TIP-1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: GLUTAMINASE L PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TAX1BP3, TIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VARIANT: PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET-3C/GIP; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES KEYWDS GIP, GLUTAMINASE L, PDZ DOMAIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.L.ZOETEWEY,M.OVEE,M.BANERJEE,R.BHASKARAN,S.MOHANTY REVDAT 2 15-JUN-11 2L4T 1 JRNL REVDAT 1 06-APR-11 2L4T 0 JRNL AUTH D.L.ZOETEWEY,M.OVEE,M.BANERJEE,R.BHASKARAN,S.MOHANTY JRNL TITL PROMISCUOUS BINDING AT THE CROSSROADS OF NUMEROUS CANCER JRNL TITL 2 PATHWAYS: INSIGHT FROM THE BINDING OF GLUTAMINASE JRNL TITL 3 INTERACTING PROTEIN WITH GLUTAMINASE L. JRNL REF BIOCHEMISTRY V. 50 3528 2011 JRNL REFN ISSN 0006-2960 JRNL PMID 21417405 JRNL DOI 10.1021/BI102055Y REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.1 REMARK 3 AUTHORS : NILGES, M. ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2L4T COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-10. REMARK 100 THE RCSB ID CODE IS RCSB101957. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1 MM [U-99% 13C; U-99% 15N] REMARK 210 GLUTAMINASE INTERACTING PROTEIN REMARK 210 3, 1-3 MM GLUTAMINASE L PEPTIDE, REMARK 210 50 MM SODIUM PHOSPHATE, 0.1% W/V REMARK 210 SODIUM AZIDE, 1 MM EDTA, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D 1H-15N REMARK 210 TOCSY; 3D HCCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D 1H-13C REMARK 210 FILTERED NOESY; 3D 1H-15N REMARK 210 FILTERED NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.1 REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HB VAL A 12 HB2 ARG A 111 1.32 REMARK 500 HB3 GLN A 79 HA ASP A 84 1.32 REMARK 500 HA GLN A 79 HG3 MET A 85 1.32 REMARK 500 HB2 PHE A 31 HA VAL A 60 1.36 REMARK 500 HD21 LEU A 29 HE1 PHE A 31 1.36 REMARK 500 HG13 VAL A 57 H GLY A 74 1.45 REMARK 500 HG3 GLN A 79 HB2 LEU A 108 1.47 REMARK 500 HG12 VAL A 88 HB2 GLN A 92 1.47 REMARK 500 HB3 GLU A 48 HB3 ASP A 52 1.47 REMARK 500 HG21 ILE A 18 HD23 LEU A 29 1.53 REMARK 500 HG21 ILE A 33 HG23 VAL A 57 1.53 REMARK 500 OE1 GLU A 48 HZ1 LYS B 161 1.55 REMARK 500 H ASP A 40 HE22 GLN A 43 1.56 REMARK 500 HG23 ILE A 18 HA ALA A 66 1.57 REMARK 500 H THR A 89 HG3 GLN A 92 1.58 REMARK 500 HA HIS A 19 HA VAL A 104 1.59 REMARK 500 HG21 VAL A 109 H THR A 110 1.60 REMARK 500 H GLN A 23 O ASN A 26 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 6 PRO A 65 C - N - CA ANGL. DEV. = 11.1 DEGREES REMARK 500 14 PRO A 65 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 99.13 63.85 REMARK 500 1 TYR A 3 117.99 72.73 REMARK 500 1 THR A 10 -65.38 68.40 REMARK 500 1 ALA A 11 113.77 -165.81 REMARK 500 1 LYS A 20 155.38 -47.27 REMARK 500 1 GLN A 39 -147.06 -119.73 REMARK 500 1 GLU A 48 -60.06 87.65 REMARK 500 1 ASP A 49 35.34 -150.46 REMARK 500 1 LYS A 50 112.73 71.19 REMARK 500 1 THR A 51 12.29 58.97 REMARK 500 1 ASP A 52 -70.18 -67.52 REMARK 500 1 LYS A 53 -21.17 76.91 REMARK 500 1 ASN A 81 19.26 58.11 REMARK 500 1 ASP A 84 108.53 -26.29 REMARK 500 1 LYS A 99 -152.36 -97.49 REMARK 500 1 VAL A 104 144.46 -177.33 REMARK 500 1 SER A 113 -4.38 88.49 REMARK 500 1 GLN A 115 -172.28 -60.96 REMARK 500 1 ALA A 117 20.99 -158.87 REMARK 500 1 VAL A 118 84.70 30.45 REMARK 500 1 ASN B 163 99.24 -45.99 REMARK 500 2 VAL A 9 157.21 49.23 REMARK 500 2 ALA A 11 115.71 -165.53 REMARK 500 2 HIS A 19 79.71 -107.89 REMARK 500 2 LEU A 29 58.62 -168.98 REMARK 500 2 ILE A 37 -37.51 -132.84 REMARK 500 2 GLN A 39 -79.76 -89.86 REMARK 500 2 PHE A 46 -41.95 179.13 REMARK 500 2 SER A 47 -50.38 -175.68 REMARK 500 2 GLU A 48 -89.34 -172.87 REMARK 500 2 ASP A 49 61.05 -115.46 REMARK 500 2 LYS A 50 -72.21 65.19 REMARK 500 2 SER A 61 98.61 -67.17 REMARK 500 2 ASN A 81 9.55 57.29 REMARK 500 2 ASP A 84 104.43 -28.52 REMARK 500 2 SER A 113 2.81 82.66 REMARK 500 2 ASN B 163 3.97 -150.33 REMARK 500 3 THR A 10 -60.04 -98.34 REMARK 500 3 ALA A 11 121.70 -171.67 REMARK 500 3 LEU A 29 75.35 -113.03 REMARK 500 3 GLN A 39 -83.04 -98.26 REMARK 500 3 PHE A 46 -40.33 -166.04 REMARK 500 3 SER A 47 -63.92 -149.13 REMARK 500 3 GLU A 48 -56.36 -171.97 REMARK 500 3 ASP A 49 -158.77 -142.70 REMARK 500 3 LYS A 53 -37.03 90.25 REMARK 500 3 ASP A 84 120.55 -27.05 REMARK 500 3 ARG A 100 -21.08 74.51 REMARK 500 3 SER A 113 -2.88 91.17 REMARK 500 3 GLU B 162 106.39 -169.53 REMARK 500 REMARK 500 THIS ENTRY HAS 351 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 166 MET B 167 6 147.52 REMARK 500 GLU A 103 VAL A 104 15 -149.62 REMARK 500 GLU B 165 SER B 166 17 -148.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 6 TYR A 56 0.08 SIDE CHAIN REMARK 500 19 PHE A 31 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2L4S RELATED DB: PDB REMARK 900 RELATED ID: 17254 RELATED DB: BMRB DBREF 2L4T A 1 124 UNP O14907 TX1B3_HUMAN 1 124 DBREF 2L4T B 161 168 PDB 2L4T 2L4T 161 168 SEQRES 1 A 124 MET SER TYR ILE PRO GLY GLN PRO VAL THR ALA VAL VAL SEQRES 2 A 124 GLN ARG VAL GLU ILE HIS LYS LEU ARG GLN GLY GLU ASN SEQRES 3 A 124 LEU ILE LEU GLY PHE SER ILE GLY GLY GLY ILE ASP GLN SEQRES 4 A 124 ASP PRO SER GLN ASN PRO PHE SER GLU ASP LYS THR ASP SEQRES 5 A 124 LYS GLY ILE TYR VAL THR ARG VAL SER GLU GLY GLY PRO SEQRES 6 A 124 ALA GLU ILE ALA GLY LEU GLN ILE GLY ASP LYS ILE MET SEQRES 7 A 124 GLN VAL ASN GLY TRP ASP MET THR MET VAL THR HIS ASP SEQRES 8 A 124 GLN ALA ARG LYS ARG LEU THR LYS ARG SER GLU GLU VAL SEQRES 9 A 124 VAL ARG LEU LEU VAL THR ARG GLN SER LEU GLN LYS ALA SEQRES 10 A 124 VAL GLN GLN SER MET LEU SER SEQRES 1 B 8 LYS GLU ASN LEU GLU SER MET VAL HELIX 1 1 PRO A 65 GLY A 70 1 6 HELIX 2 2 THR A 89 THR A 98 1 10 SHEET 1 A 4 VAL A 12 ILE A 18 0 SHEET 2 A 4 VAL A 105 ARG A 111 -1 O LEU A 107 N VAL A 16 SHEET 3 A 4 LYS A 76 VAL A 80 -1 N MET A 78 O LEU A 108 SHEET 4 A 4 TRP A 83 ASP A 84 -1 O TRP A 83 N VAL A 80 SHEET 1 B 2 LEU A 21 GLN A 23 0 SHEET 2 B 2 ASN A 26 ILE A 28 -1 O ASN A 26 N GLN A 23 SHEET 1 C 3 ILE A 55 VAL A 57 0 SHEET 2 C 3 SER A 32 GLY A 35 -1 N GLY A 34 O TYR A 56 SHEET 3 C 3 GLU B 165 MET B 167 -1 O SER B 166 N ILE A 33 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1