HEADER OXIDOREDUCTASE 03-NOV-10 2L5O TITLE SOLUTION STRUCTURE OF A PUTATIVE THIOREDOXIN FROM NEISSERIA TITLE 2 MENINGITIDIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THIOREDOXIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS SEROGROUP B; SOURCE 3 ORGANISM_TAXID: 491; SOURCE 4 GENE: NMB1958; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC, NYSGRC, PSI-BIOLOGY, TRANSPORT PROTEIN OXIDOREDUCTASE, KEYWDS 4 OXIDOREDUCTASE, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.HARRIS,R.FOTI,R.D.SEIDEL,J.B.BONANNO,J.FREEMAN,K.T.BAIN,J.M.SAUDER, AUTHOR 2 S.K.BURLEY,M.E.GIRVIN,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC),NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 4 CONSORTIUM (NYSGRC) REVDAT 5 01-MAY-24 2L5O 1 REMARK REVDAT 4 10-FEB-21 2L5O 1 AUTHOR JRNL REMARK SEQADV REVDAT 3 14-NOV-18 2L5O 1 AUTHOR REVDAT 2 08-MAY-13 2L5O 1 AUTHOR REMARK KEYWDS VERSN REVDAT 1 15-DEC-10 2L5O 0 JRNL AUTH R.HARRIS,R.FOTI,R.D.SEIDEL,J.B.BONANNO,J.FREEMAN,K.T.BAIN, JRNL AUTH 2 J.M.SAUDER,S.K.BURLEY,M.E.GIRVIN,S.C.ALMO JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE THIOREDOXIN FROM NEISSERIA JRNL TITL 2 MENINGITIDIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.21 REMARK 3 AUTHORS : BRUNGER A. T. ET.AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT IN A BOX OF WATER REMARK 4 REMARK 4 2L5O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-DEC-10. REMARK 100 THE DEPOSITION ID IS D_1000101988. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PUTATIVE THIOREDOXIN, 20 MM REMARK 210 SODIUM PHOSPHATE, 100 MM SODIUM REMARK 210 CHLORIDE, 1 MM DTT, 90% H2O, 10% REMARK 210 D2O; 1 MM PUTATIVE THIOREDOXIN, REMARK 210 20 MM SODIUM PHOSPHATE, 100 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 15N HSQC; 15N NOESY-HSQC; 13C REMARK 210 HSQC; AROMATIC 13C HSQC; 13C REMARK 210 NOESY-HSQC; 13C AROMATIC NOESY- REMARK 210 HSQC; HNCO; HNCACO; HNCOCA; REMARK 210 HNCACB; CBCACONH REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPN_ANALYSIS 2.1.2 REMARK 210 METHOD USED : SIMULATING ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES FOR LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A -2 REMARK 465 SER A -1 REMARK 465 LEU A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 12 HZ2 LYS A 16 1.54 REMARK 500 OE2 GLU A 72 HZ2 LYS A 79 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 5 72.53 46.05 REMARK 500 1 ASN A 58 14.93 162.79 REMARK 500 1 PRO A 67 80.77 -67.33 REMARK 500 1 THR A 101 -66.64 -99.88 REMARK 500 1 GLN A 102 -38.54 72.53 REMARK 500 1 ILE A 116 96.92 58.34 REMARK 500 1 LEU A 117 -76.03 -93.68 REMARK 500 1 ASP A 125 107.66 -48.75 REMARK 500 1 ASN A 139 93.28 -64.19 REMARK 500 1 ALA A 142 52.17 70.02 REMARK 500 1 GLU A 143 101.83 62.94 REMARK 500 2 SER A 2 100.92 62.29 REMARK 500 2 THR A 4 35.86 -148.86 REMARK 500 2 ALA A 5 108.34 66.13 REMARK 500 2 LYS A 57 -69.71 -100.87 REMARK 500 2 ASN A 58 29.59 164.23 REMARK 500 2 PRO A 70 155.76 -49.56 REMARK 500 2 LYS A 93 17.94 82.93 REMARK 500 2 LYS A 112 23.73 -166.80 REMARK 500 2 ILE A 116 89.63 64.02 REMARK 500 2 ASN A 139 35.38 -73.10 REMARK 500 2 SER A 140 13.06 -150.09 REMARK 500 3 SER A 2 -72.74 -65.73 REMARK 500 3 LYS A 3 -125.02 55.21 REMARK 500 3 ALA A 5 124.51 72.94 REMARK 500 3 GLN A 24 21.69 -71.49 REMARK 500 3 LYS A 57 -62.81 -95.33 REMARK 500 3 ASN A 58 7.31 169.66 REMARK 500 3 PRO A 67 66.49 -69.30 REMARK 500 3 LYS A 113 -16.76 71.92 REMARK 500 3 ASP A 125 93.07 -53.40 REMARK 500 3 ASP A 141 -164.60 178.39 REMARK 500 3 HIS A 147 94.56 -60.17 REMARK 500 3 HIS A 148 76.55 -101.40 REMARK 500 3 HIS A 149 166.16 176.25 REMARK 500 4 LYS A 3 -166.80 -102.13 REMARK 500 4 ALA A 5 101.55 75.28 REMARK 500 4 PRO A 35 0.55 -62.74 REMARK 500 4 ILE A 68 -60.81 -124.75 REMARK 500 4 PRO A 70 -179.96 -69.33 REMARK 500 4 LYS A 93 -2.31 68.61 REMARK 500 4 GLU A 115 -30.55 69.17 REMARK 500 4 SER A 140 121.94 169.75 REMARK 500 4 ALA A 142 108.49 -162.62 REMARK 500 4 HIS A 145 86.95 -66.17 REMARK 500 4 HIS A 147 -86.28 62.62 REMARK 500 4 HIS A 148 -84.64 61.08 REMARK 500 5 SER A 2 -168.07 62.87 REMARK 500 5 LYS A 3 98.95 64.76 REMARK 500 5 ALA A 5 151.14 77.02 REMARK 500 REMARK 500 THIS ENTRY HAS 236 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 90 ALA A 91 12 -146.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-11210E RELATED DB: TARGETDB REMARK 900 RELATED ID: NYSGRC-011326 RELATED DB: TARGETTRACK DBREF 2L5O A 1 142 UNP Q9JXN4 Q9JXN4_NEIMB 24 165 SEQADV 2L5O MET A -2 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O SER A -1 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O LEU A 0 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O GLU A 143 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O GLY A 144 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O HIS A 145 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O HIS A 146 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O HIS A 147 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O HIS A 148 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O HIS A 149 UNP Q9JXN4 EXPRESSION TAG SEQADV 2L5O HIS A 150 UNP Q9JXN4 EXPRESSION TAG SEQRES 1 A 153 MET SER LEU ASP SER LYS THR ALA PRO ALA PHE SER LEU SEQRES 2 A 153 PRO ASP LEU HIS GLY LYS THR VAL SER ASN ALA ASP LEU SEQRES 3 A 153 GLN GLY LYS VAL THR LEU ILE ASN PHE TRP PHE PRO SER SEQRES 4 A 153 CYS PRO GLY CYS VAL SER GLU MET PRO LYS ILE ILE LYS SEQRES 5 A 153 THR ALA ASN ASP TYR LYS ASN LYS ASN PHE GLN VAL LEU SEQRES 6 A 153 ALA VAL ALA GLN PRO ILE ASP PRO ILE GLU SER VAL ARG SEQRES 7 A 153 GLN TYR VAL LYS ASP TYR GLY LEU PRO PHE THR VAL MET SEQRES 8 A 153 TYR ASP ALA ASP LYS ALA VAL GLY GLN ALA PHE GLY THR SEQRES 9 A 153 GLN VAL TYR PRO THR SER VAL LEU ILE GLY LYS LYS GLY SEQRES 10 A 153 GLU ILE LEU LYS THR TYR VAL GLY GLU PRO ASP PHE GLY SEQRES 11 A 153 LYS LEU TYR GLN GLU ILE ASP THR ALA TRP ARG ASN SER SEQRES 12 A 153 ASP ALA GLU GLY HIS HIS HIS HIS HIS HIS HELIX 1 1 ASN A 20 GLN A 24 1 5 HELIX 2 2 GLY A 39 TYR A 54 1 16 HELIX 3 3 PRO A 70 TYR A 81 1 12 HELIX 4 4 LYS A 93 GLY A 100 1 8 HELIX 5 5 ASP A 125 ASN A 139 1 15 SHEET 1 A 2 SER A 9 PRO A 11 0 SHEET 2 A 2 THR A 17 SER A 19 -1 O VAL A 18 N LEU A 10 SHEET 1 B 5 THR A 86 TYR A 89 0 SHEET 2 B 5 PHE A 59 ALA A 65 1 N ALA A 65 O MET A 88 SHEET 3 B 5 VAL A 27 TRP A 33 1 N ASN A 31 O VAL A 64 SHEET 4 B 5 THR A 106 ILE A 110 -1 O ILE A 110 N THR A 28 SHEET 5 B 5 LYS A 118 VAL A 121 -1 O TYR A 120 N SER A 107 CISPEP 1 TYR A 104 PRO A 105 1 -0.09 CISPEP 2 TYR A 104 PRO A 105 2 0.43 CISPEP 3 TYR A 104 PRO A 105 3 0.09 CISPEP 4 TYR A 104 PRO A 105 4 0.38 CISPEP 5 TYR A 104 PRO A 105 5 0.20 CISPEP 6 TYR A 104 PRO A 105 6 0.11 CISPEP 7 TYR A 104 PRO A 105 7 -0.24 CISPEP 8 TYR A 104 PRO A 105 8 0.69 CISPEP 9 TYR A 104 PRO A 105 9 -0.22 CISPEP 10 TYR A 104 PRO A 105 10 0.12 CISPEP 11 TYR A 104 PRO A 105 11 0.04 CISPEP 12 TYR A 104 PRO A 105 12 -0.49 CISPEP 13 TYR A 104 PRO A 105 13 0.45 CISPEP 14 TYR A 104 PRO A 105 14 0.36 CISPEP 15 TYR A 104 PRO A 105 15 0.48 CISPEP 16 TYR A 104 PRO A 105 16 -0.46 CISPEP 17 TYR A 104 PRO A 105 17 0.18 CISPEP 18 TYR A 104 PRO A 105 18 0.25 CISPEP 19 TYR A 104 PRO A 105 19 -0.16 CISPEP 20 TYR A 104 PRO A 105 20 0.41 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1